Experiment set3IT066 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Tetracycline hydrochloride 0.0002 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2825 -5.0 -4.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4352 -4.6 -5.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5527 -4.4 -4.3 Cold shock protein CspC compare
Pf6N2E2_3607 -4.4 -11.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4187 -4.1 -6.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2129 -4.1 -4.1 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4153 -3.9 -3.8 Sensory box histidine kinase compare
Pf6N2E2_5430 -3.9 -13.3 Transglycosylase, Slt family compare
Pf6N2E2_464 -3.9 -4.1 Sensory histidine kinase QseC compare
Pf6N2E2_2824 -3.9 -10.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5219 -3.8 -9.3 FIG140336: TPR domain protein compare
Pf6N2E2_2823 -3.7 -7.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5534 -3.5 -8.1 FIG000859: hypothetical protein YebC compare
Pf6N2E2_463 -3.2 -8.1 Transcriptional regulatory protein RstA compare
Pf6N2E2_3351 -3.2 -7.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2217 -3.0 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4162 -2.8 -5.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4372 -2.8 -7.1 FIG00460773: hypothetical protein compare
Pf6N2E2_3603 -2.7 -6.7 FIG003573: hypothetical protein compare
Pf6N2E2_3460 -2.5 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2218 -2.5 -5.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3835 -2.4 -3.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5727 -2.4 -5.3 FIG00955360: hypothetical protein compare
Pf6N2E2_4353 -2.3 -6.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2313 -2.2 -4.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4417 -2.2 -4.9 Protein of unknown function DUF484 compare
Pf6N2E2_2473 -2.1 -2.1 Major outer membrane lipoprotein I compare
Pf6N2E2_3270 -2.1 -4.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4416 -2.1 -2.8 Tyrosine recombinase XerC compare
Pf6N2E2_2574 -2.1 -3.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_5340 -2.0 -6.1 Stringent starvation protein A compare
Pf6N2E2_2274 -2.0 -6.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2973 -1.9 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2646 -1.8 -2.9 FIG00953416: hypothetical protein compare
Pf6N2E2_2753 -1.7 -3.8 HtrA protease/chaperone protein compare
Pf6N2E2_2694 -1.7 -8.7 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_5987 -1.7 -6.7 OmpA family protein compare
Pf6N2E2_2320 -1.6 -4.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5816 -1.6 -1.9 Smr domain protein compare
Pf6N2E2_5006 -1.6 -7.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3612 -1.6 -3.0 HflK protein compare
Pf6N2E2_3876 -1.6 -4.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3666 -1.6 -5.0 InaA protein compare
Pf6N2E2_3611 -1.6 -1.7 HflC protein compare
Pf6N2E2_5338 -1.5 -7.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5339 -1.4 -5.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3039 -1.4 -5.7 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3060 -1.3 -3.9 Outer membrane protein H precursor compare
Pf6N2E2_2318 -1.2 -7.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4362 -1.2 -2.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5337 -1.2 -4.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5242 -1.2 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1545 -1.2 -4.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3753 -1.2 -9.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2967 -1.2 -1.3 Cold shock protein CspA compare
Pf6N2E2_3505 -1.2 -2.2 Translation initiation factor SUI1-related protein compare
Pf6N2E2_3027 -1.2 -2.0 Baseplate assembly protein V compare
Pf6N2E2_625 -1.2 -4.8 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3461 -1.2 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5986 -1.2 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_6058 -1.2 -5.2 FIG139976: hypothetical protein compare
Pf6N2E2_2317 -1.1 -3.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5536 -1.1 -1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3786 -1.1 -3.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_3515 -1.0 -5.7 Probable transmembrane protein compare
Pf6N2E2_2552 -1.0 -4.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5181 -1.0 -6.5 Paraquat-inducible protein A compare
Pf6N2E2_3504 -1.0 -6.2 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5766 -1.0 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1776 -1.0 -2.4 Chemotaxis protein CheD compare
Pf6N2E2_4886 -1.0 -7.4 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3833 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_5610 -1.0 -4.4 two-component system sensor protein compare
Pf6N2E2_5633 -1.0 -7.3 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4075 -1.0 -4.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3258 -0.9 -3.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5780 -0.9 -5.4 Periplasmic protease compare
Pf6N2E2_2527 -0.9 -3.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4159 -0.9 -3.2 Cytochrome c4 compare
Pf6N2E2_2282 -0.9 -2.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_1534 -0.9 -1.9 Probable transmembrane protein compare
Pf6N2E2_2152 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_5178 -0.9 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2010 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_4204 -0.9 -1.3 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5671 -0.9 -3.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3493 -0.8 -3.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3040 -0.8 -4.1 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2311 -0.8 -4.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5510 -0.8 -2.6 FIG00955324: hypothetical protein compare
Pf6N2E2_2340 -0.8 -3.9 Transcriptional regulator, GntR family compare
Pf6N2E2_5262 -0.8 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_4918 -0.8 -2.6 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2310 -0.8 -5.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5841 -0.8 -1.2 GlcG protein compare
Pf6N2E2_6057 -0.8 -1.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5835 -0.8 -2.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5182 -0.8 -4.1 Paraquat-inducible protein A compare
Pf6N2E2_2699 -0.8 -3.8 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_621 -0.8 -4.3 TPR domain protein in aerotolerance operon compare
Pf6N2E2_620 -0.8 -5.1 BatD compare
Pf6N2E2_1352 -0.8 -1.7 Cation transport ATPase compare
Pf6N2E2_4611 -0.8 -2.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2286 -0.8 -2.6 FIG00953287: hypothetical protein compare
Pf6N2E2_2605 -0.8 -3.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5183 -0.8 -5.9 Paraquat-inducible protein B compare
Pf6N2E2_4155 -0.8 -4.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2940 -0.7 -3.6 OmpA family protein compare
Pf6N2E2_1434 -0.7 -2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3810 -0.7 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5993 -0.7 -2.2 FIG00957412: hypothetical protein compare
Pf6N2E2_3588 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_622 -0.7 -3.1 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_624 -0.7 -4.0 hypothetical protein PA3071 compare
Pf6N2E2_648 -0.7 -1.7 General secretion pathway protein K compare
Pf6N2E2_5739 -0.7 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3498 -0.7 -2.7 FIG00953349: hypothetical protein compare
Pf6N2E2_75 -0.7 -2.9 Colicin V production protein compare
Pf6N2E2_799 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5428 -0.7 -3.0 DNA recombination and repair protein RecO compare
Pf6N2E2_5676 -0.7 -2.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3825 -0.7 -2.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3261 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_1450 -0.7 -1.6 FIG00960438: hypothetical protein compare
Pf6N2E2_4579 -0.7 -1.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3782 -0.7 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_178 -0.7 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2309 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_2754 -0.7 -3.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_4928 -0.7 -1.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_3240 -0.7 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_146 -0.7 -1.6 Transcriptional regulator, MarR family compare
Pf6N2E2_2325 -0.7 -3.5 Recombination protein RecR compare
Pf6N2E2_2189 -0.6 -3.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2755 -0.6 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4843 -0.6 -3.0 FIG00956941: hypothetical protein compare
Pf6N2E2_3516 -0.6 -1.8 Probable transmembrane protein compare
Pf6N2E2_1778 -0.6 -1.7 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_5241 -0.6 -0.8 Aminopeptidase N compare
Pf6N2E2_43 -0.6 -3.0 Histidine permease YuiF compare
Pf6N2E2_2714 -0.6 -1.6 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_704 -0.6 -2.8 Cytochrome c551/c552 compare
Pf6N2E2_478 -0.6 -1.7 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_5158 -0.6 -2.7 FIG00954153: hypothetical protein compare
Pf6N2E2_2261 -0.6 -3.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_33 -0.6 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4999 -0.6 -2.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4054 -0.6 -1.9 Osmotically inducible protein C compare
Pf6N2E2_2418 -0.6 -1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3534 -0.6 -1.7 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_1797 -0.6 -1.8 Transcriptional regulator compare
Pf6N2E2_2472 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_4392 -0.6 -2.0 Translation initiation inhibitor compare
Pf6N2E2_634 -0.6 -3.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_309 -0.6 -0.7 FIG00957702: hypothetical protein compare
Pf6N2E2_241 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_2213 -0.6 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2693 -0.6 -1.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2606 -0.6 -3.5 hypothetical protein compare
Pf6N2E2_5842 -0.6 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2314 -0.6 -1.6 VapB protein (antitoxin to VapC) compare
Pf6N2E2_4454 -0.6 -2.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4494 -0.6 -1.9 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_1636 -0.6 -4.2 Ferrichrome-iron receptor compare
Pf6N2E2_4263 -0.6 -1.5 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_1283 -0.6 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_681 -0.6 -3.0 4-hydroxyproline epimerase (EC 5.1.1.8) compare
Pf6N2E2_1391 -0.6 -2.1 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1699 -0.6 -1.9 FIG00955832: hypothetical protein compare
Pf6N2E2_374 -0.6 -1.4 FIG00953249: hypothetical protein compare
Pf6N2E2_4276 -0.6 -2.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_5320 -0.6 -3.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3300 -0.6 -2.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1551 -0.6 -2.8 Transcriptional regulator compare
Pf6N2E2_332 -0.6 -3.2 putative nucleoside-diphosphate-sugar epimerase compare
Pf6N2E2_342 -0.6 -0.9 DNA-binding response regulator compare
Pf6N2E2_2474 -0.5 -4.1 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_5840 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_5605 -0.5 -1.1 FxsA protein compare
Pf6N2E2_5845 -0.5 -2.7 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5015 -0.5 -2.8 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_5846 -0.5 -3.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_529 -0.5 -3.2 FIG00954439: hypothetical protein compare
Pf6N2E2_5785 -0.5 -0.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_40 -0.5 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5679 -0.5 -2.8 hypothetical protein compare
Pf6N2E2_5771 -0.5 -3.5 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1779 -0.5 -1.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_3257 -0.5 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2128 -0.5 -2.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5130 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_339 -0.5 -1.5 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_3132 -0.5 -1.4 FIG00954548: hypothetical protein compare
Pf6N2E2_1959 -0.5 -1.2 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_4580 -0.5 -3.4 FIG015287: Zinc protease compare
Pf6N2E2_5950 -0.5 -1.7 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3144 -0.5 -3.4 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_4415 -0.5 -1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5494 -0.5 -1.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1885 -0.5 -2.0 Transcriptional regulator, AraC family compare


Specific Phenotypes

For 2 genes in this experiment

For stress Tetracycline hydrochloride in Pseudomonas fluorescens FW300-N2E2

For stress Tetracycline hydrochloride across organisms