Experiment set3IT066 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with benzoic acid 0.58 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_05625 -3.3 -3.2 transcription elongation factor GreA compare
AO353_22685 -3.0 -2.9 peroxidase compare
AO353_03795 -2.7 -5.4 fumarate hydratase compare
AO353_07355 -2.7 -4.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_07315 -2.4 -3.2 rRNA methyltransferase compare
AO353_12115 -2.3 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_13100 -2.1 -2.4 GTPase RsgA compare
AO353_27415 -2.1 -2.6 hypothetical protein compare
AO353_12500 -2.1 -2.7 shikimate kinase compare
AO353_08880 -2.0 -3.3 exopolyphosphatase compare
AO353_09315 -2.0 -10.1 LysR family transcriptional regulator compare
AO353_11730 -2.0 -8.6 glutamate--cysteine ligase compare
AO353_14485 -1.9 -1.8 pseudouridine synthase compare
AO353_04355 -1.9 -2.8 homoserine dehydrogenase compare
AO353_02250 -1.9 -3.5 chorismate synthase compare
AO353_12105 -1.9 -5.9 peptidase S41 compare
AO353_07515 -1.9 -2.8 transporter compare
AO353_00825 -1.9 -3.6 porin compare
AO353_10780 -1.8 -2.1 DNA-binding protein compare
AO353_13225 -1.8 -3.9 50S ribosomal protein L9 compare
AO353_21625 -1.8 -2.6 Fe/S biogenesis protein NfuA compare
AO353_03615 -1.8 -3.1 cold-shock protein compare
AO353_06040 -1.8 -4.0 exodeoxyribonuclease V subunit alpha compare
AO353_20170 -1.7 -4.9 trigger factor compare
AO353_15905 -1.7 -6.4 outer membrane protein assembly factor BamB compare
AO353_06045 -1.7 -6.7 exodeoxyribonuclease V subunit beta compare
AO353_09000 -1.6 -5.1 argininosuccinate lyase compare
AO353_09905 -1.6 -7.7 phosphate-binding protein compare
AO353_06050 -1.5 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_00495 -1.5 -2.4 DNA topoisomerase I compare
AO353_06415 -1.5 -4.4 hypothetical protein compare
AO353_08110 -1.5 -5.8 glutathione synthetase compare
AO353_03515 -1.5 -2.3 cold-shock protein compare
AO353_03710 -1.4 -2.9 formyltetrahydrofolate deformylase compare
AO353_03585 -1.4 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_14495 -1.4 -8.2 acetolactate synthase 3 catalytic subunit compare
AO353_04520 -1.4 -5.3 elongation factor 4 compare
AO353_14220 -1.4 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_09890 -1.4 -4.7 phosphate ABC transporter ATP-binding protein compare
AO353_20175 -1.4 -3.2 ATP-dependent Clp protease proteolytic subunit compare
AO353_03590 -1.4 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_00515 -1.4 -3.3 hypothetical protein compare
AO353_27695 -1.4 -6.7 isocitrate dehydrogenase compare
AO353_16940 -1.4 -4.8 deoxycytidine triphosphate deaminase compare
AO353_22520 -1.4 -2.2 hypothetical protein compare
AO353_09240 -1.4 -3.0 acetylglutamate kinase compare
AO353_05690 -1.4 -3.2 SsrA-binding protein compare
AO353_15185 -1.4 -4.2 ATPase compare
AO353_12935 -1.4 -3.4 glycosyltransferase compare
AO353_05150 -1.3 -4.0 ABC transporter ATP-binding protein compare
AO353_27585 -1.3 -2.4 DNA repair protein compare
AO353_14740 -1.3 -3.2 GTP-binding protein compare
AO353_17945 -1.3 -2.2 cyclic nucleotide-binding protein compare
AO353_09135 -1.3 -2.0 cytochrome C compare
AO353_23620 -1.3 -2.4 hypothetical protein compare
AO353_07325 -1.3 -1.8 diadenosine tetraphosphatase compare
AO353_24130 -1.3 -2.5 hypothetical protein compare
AO353_27650 -1.3 -3.8 cell division protein FtsK compare
AO353_18540 -1.3 -2.4 pseudouridine synthase compare
AO353_12345 -1.2 -2.0 twin-arginine protein translocation system subunit TatC compare
AO353_03580 -1.2 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_12650 -1.2 -1.5 hypothetical protein compare
AO353_08685 -1.2 -5.9 N-acetylglutamate synthase compare
AO353_01220 -1.2 -2.5 hypothetical protein compare
AO353_14150 -1.2 -1.9 peptidylprolyl isomerase compare
AO353_00660 -1.2 -2.7 transcriptional regulator compare
AO353_13200 -1.2 -7.6 exoribonuclease R compare
AO353_12130 -1.1 -3.4 preprotein translocase subunit SecB compare
AO353_10930 -1.1 -5.8 DNA polymerase I compare
AO353_02000 -1.1 -2.9 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_27090 -1.1 -2.2 hypothetical protein compare
AO353_04190 -1.1 -1.9 glycerol-3-phosphate dehydrogenase compare
AO353_07075 -1.1 -3.4 elongation factor Tu compare
AO353_02020 -1.1 -3.7 hypothetical protein compare
AO353_08600 -1.1 -3.1 TetR family transcriptional regulator compare
AO353_21400 -1.1 -1.9 conjugal transfer protein TraR compare
AO353_08015 -1.1 -5.4 5,10-methylenetetrahydrofolate reductase compare
AO353_10670 -1.1 -4.4 shikimate dehydrogenase compare
AO353_16805 -1.1 -4.3 recombinase RecA compare
AO353_28555 -1.1 -2.1 LysR family transcriptional regulator compare
AO353_15830 -1.1 -2.2 transcriptional regulator compare
AO353_11165 -1.1 -6.1 hypothetical protein compare
AO353_14370 -1.1 -4.9 glucose-6-phosphate isomerase compare
AO353_01410 -1.0 -2.8 ribonuclease E compare
AO353_09060 -1.0 -2.1 hypothetical protein compare
AO353_17675 -1.0 -3.8 hypothetical protein compare
AO353_15465 -1.0 -4.3 cytochrome C oxidase compare
AO353_18630 -1.0 -6.0 beta-ketoacyl-ACP synthase compare
AO353_14940 -1.0 -2.9 malate:quinone oxidoreductase compare
AO353_00650 -1.0 -2.2 cytochrome biogenesis protein compare
AO353_11770 -1.0 -1.7 molecular chaperone Hsp33 compare
AO353_08115 -1.0 -4.0 energy transducer TonB compare
AO353_26045 -1.0 -1.8 hypothetical protein compare
AO353_01990 -1.0 -4.5 UDP-N-acetylglucosamine 2-epimerase compare
AO353_14775 -1.0 -3.9 hypothetical protein compare
AO353_26070 -1.0 -1.9 hypothetical protein compare
AO353_20185 -1.0 -3.5 DNA-binding protein compare
AO353_19605 -1.0 -1.5 hypothetical protein compare
AO353_04565 -0.9 -3.7 nucleoid-associated protein compare
AO353_13640 -0.9 -2.6 histidine kinase compare
AO353_05550 -0.9 -4.5 pseudouridine synthase compare
AO353_10455 -0.9 -1.7 tRNA modification GTPase MnmE compare
AO353_15460 -0.9 -4.5 cytochrome o ubiquinol oxidase subunit III compare
AO353_13925 -0.9 -1.5 XRE family transcriptional regulator compare
AO353_10320 -0.9 -1.3 hypothetical protein compare
AO353_24340 -0.9 -1.6 TetR family transcriptional regulator compare
AO353_06585 -0.9 -4.0 hypothetical protein compare
AO353_08165 -0.9 -2.2 pyrroline-5-carboxylate reductase compare
AO353_22700 -0.9 -2.0 LexA family transcriptional regulator compare
AO353_02070 -0.9 -4.2 prephenate dehydratase compare
AO353_07645 -0.9 -1.3 sarcosine oxidase subunit gamma compare
AO353_18780 -0.9 -3.9 cobyrinic acid a,c-diamide synthase compare
AO353_00310 -0.9 -4.9 transaldolase compare
AO353_09050 -0.9 -2.5 recombinase XerC compare
AO353_15455 -0.9 -6.6 cytochrome o ubiquinol oxidase subunit I compare
AO353_20510 -0.9 -1.7 amidase compare
AO353_12930 -0.9 -2.2 GlcNAc-PI de-N-acetylase compare
AO353_03420 -0.8 -2.8 phosphogluconate dehydratase compare
AO353_21425 -0.8 -2.2 hypothetical protein compare
AO353_12915 -0.8 -4.5 carbamoyltransferase compare
AO353_07155 -0.8 -3.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_13220 -0.8 -3.8 hypothetical protein compare
AO353_10950 -0.8 -5.4 thiol:disulfide interchange protein compare
AO353_18510 -0.8 -2.5 hypothetical protein compare
AO353_00330 -0.8 -4.5 hypothetical protein compare
AO353_15470 -0.8 -5.9 protoheme IX farnesyltransferase compare
AO353_05135 -0.8 -4.3 toluene tolerance protein compare
AO353_27060 -0.8 -2.6 XshC-Cox1 family protein compare
AO353_09250 -0.8 -1.8 exodeoxyribonuclease III compare
AO353_09900 -0.8 -5.7 phosphate ABC transporter permease compare
AO353_09895 -0.8 -4.0 phosphate ABC transporter permease compare
AO353_04175 -0.8 -2.4 glycerol uptake facilitator GlpF compare
AO353_20970 -0.8 -3.0 hypothetical protein compare
AO353_22475 -0.8 -2.4 alkaline phosphatase compare
AO353_03360 -0.8 -4.3 glucose-6-phosphate dehydrogenase compare
AO353_13140 -0.8 -3.0 tRNA dimethylallyltransferase compare
AO353_27500 -0.8 -1.6 hypothetical protein compare
AO353_28990 -0.8 -3.7 LOG family protein compare
AO353_18425 -0.8 -2.1 hypothetical protein compare
AO353_02550 -0.8 -2.1 TetR family transcriptional regulator compare
AO353_18555 -0.8 -5.6 aromatic amino acid transporter compare
AO353_10900 -0.8 -4.8 hypothetical protein compare
AO353_14400 -0.8 -2.2 Fis family transcriptional regulator compare
AO353_19770 -0.7 -1.5 peptidase compare
AO353_10055 -0.7 -5.1 DNA helicase II compare
AO353_08975 -0.7 -3.2 heme biosynthesis protein HemY compare
AO353_06850 -0.7 -2.5 MFS transporter compare
AO353_01995 -0.7 -5.3 hypothetical protein compare
AO353_15885 -0.7 -3.0 Cro/Cl family transcriptional regulator compare
AO353_00500 -0.7 -2.7 TonB box-like protein compare
AO353_05130 -0.7 -1.1 anti-anti-sigma factor compare
AO353_26945 -0.7 -1.6 transcriptional regulator compare
AO353_27720 -0.7 -2.3 cupin compare
AO353_01970 -0.7 -4.4 hypothetical protein compare
AO353_12945 -0.7 -3.9 toluene tolerance protein compare
AO353_28425 -0.7 -2.0 TetR family transcriptional regulator compare
AO353_09745 -0.7 -1.3 hypothetical protein compare
AO353_05145 -0.7 -2.8 ABC transporter permease compare
AO353_06540 -0.7 -1.5 hypothetical protein compare
AO353_09235 -0.7 -3.5 phosphoglucomutase compare
AO353_12420 -0.7 -2.1 predicted FeS cluster maintenance protein (from data) compare
AO353_06495 -0.7 -2.7 gamma-glutamyl phosphate reductase compare
AO353_04360 -0.7 -3.3 protein-disulfide isomerase compare
AO353_09475 -0.7 -2.4 hypothetical protein compare
AO353_00460 -0.7 -1.6 TetR family transcriptional regulator compare
AO353_26165 -0.7 -1.8 hypothetical protein compare
AO353_27300 -0.7 -3.5 phage tail protein compare
AO353_26990 -0.7 -2.0 hypothetical protein compare
AO353_27160 -0.7 -1.6 Pathogenicity locus compare
AO353_01975 -0.7 -3.3 glycosyl transferase compare
AO353_18890 -0.7 -2.7 cytochrome C compare
AO353_00115 -0.7 -1.6 hypothetical protein compare
AO353_19580 -0.7 -2.2 AraC family transcriptional regulator compare
AO353_20415 -0.7 -2.5 hypothetical protein compare
AO353_19295 -0.7 -1.6 hypothetical protein compare
AO353_16915 -0.7 -4.3 hypothetical protein compare
AO353_25990 -0.7 -3.0 aspartyl beta-hydroxylase compare
AO353_01135 -0.6 -1.5 enoyl-CoA hydratase compare
AO353_25870 -0.6 -1.9 peptide ABC transporter ATP-binding protein compare
AO353_16070 -0.6 -1.9 PadR family transcriptional regulator compare
AO353_24985 -0.6 -1.9 L-seryl-tRNA(Sec) selenium transferase compare
AO353_19090 -0.6 -0.9 MarR family transcriptional regulator compare
AO353_27710 -0.6 -0.9 DNA repair protein compare
AO353_08200 -0.6 -3.9 coproporphyrinogen III oxidase compare
AO353_27400 -0.6 -1.8 hypothetical protein compare
AO353_12575 -0.6 -2.1 type II secretion system protein GspJ compare
AO353_08980 -0.6 -1.6 heme biosynthesis operon protein HemX compare
AO353_13155 -0.6 -1.8 hypothetical protein compare
AO353_10925 -0.6 -3.2 hypothetical protein compare
AO353_21455 -0.6 -0.8 cation:proton antiporter compare
AO353_12950 -0.6 -3.6 polymerase compare
AO353_09400 -0.6 -1.8 hypothetical protein compare
AO353_10915 -0.6 -4.2 ABC transporter substrate-binding protein compare
AO353_23285 -0.6 -1.5 hypothetical protein compare
AO353_03670 -0.6 -2.2 ornithine acetyltransferase compare
AO353_22725 -0.6 -2.5 hypothetical protein compare
AO353_05240 -0.6 -1.2 rod shape-determining protein MreD compare
AO353_28565 -0.6 -1.4 hypothetical protein compare
AO353_02060 -0.6 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_23495 -0.6 -1.5 SAM-dependent methyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For stress benzoic acid in Pseudomonas fluorescens FW300-N2E3

For stress benzoic acid across organisms