Experiment set3IT066 for Caulobacter crescentus NA1000

Compare to:

PYE with Chloramphenicol 0.0005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00852 +10.4 4.8 TetR family transcriptional regulator compare
CCNA_00011 +2.6 9.5 chaperone protein DnaJ compare
CCNA_03030 +2.5 16.3 cytochrome c2 compare
CCNA_02941 +2.5 8.8 transcription elongation factor greA compare
CCNA_01059 +2.4 22.0 S-layer protein rsaA compare
CCNA_01712 +2.4 18.0 CopY/TcrY family transcriptional repressor compare
CCNA_01979 +2.4 13.2 LexA repressor compare
CCNA_02387 +2.3 18.5 glutathione reductase compare
CCNA_02000 +2.3 5.1 SSU ribosomal protein S2P compare
CCNA_02646 +2.3 4.7 cell division protein MraZ compare
CCNA_03043 +2.2 10.1 type IV pilin protein pilA compare
CCNA_00999 +2.2 9.7 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01058 +2.1 10.9 helix-turn-helix transcriptional regulator compare
CCNA_00699 +2.1 12.4 LSU ribosomal protein L28P compare
CCNA_01061 +2.1 8.4 type I secretion adaptor protein RsaE compare
CCNA_02059 +2.1 11.2 ribosomal large subunit pseudouridine synthase C compare
CCNA_00161 +2.0 15.4 hypothetical protein compare
CCNA_01060 +2.0 9.1 type I protein secretion ATP-binding protein RsaD compare
CCNA_00919 +2.0 5.3 hypothetical protein compare
CCNA_02644 +2.0 6.8 cell division protein FtsL compare
CCNA_01959 +2.0 5.4 3-dehydroquinate dehydratase compare
CCNA_02026 +2.0 9.2 hypothetical protein compare
CCNA_00392 +1.9 15.0 dihydroorotase compare
CCNA_03287 +1.9 12.4 PadR-family transcriptional regulator compare
CCNA_00162 +1.9 8.7 hypothetical protein compare
CCNA_02328 +1.9 3.0 cell cycle regulatory protein GcrA compare
CCNA_03064 +1.9 14.8 PadR-family transcriptional regulator compare
CCNA_02957 +1.9 10.5 ArsR-family transcriptional regulator compare
CCNA_02732 +1.9 5.9 hypothetical protein compare
CCNA_00027 +1.9 5.0 2OG-Fe(II) oxygenase compare
CCNA_00939 +1.9 8.9 MarR-family transcriptional regulator compare
CCNA_00562 +1.9 12.8 dihydroorotate dehydrogenase compare
CCNA_03252 +1.9 14.7 CopY/TcrY-family transcriptional regulator compare
CCNA_00756 +1.8 6.7 hypothetical protein compare
CCNA_02103 +1.8 13.2 hypothetical protein compare
CCNA_01624 +1.8 4.9 orotate phosphoribosyltransferase compare
CCNA_00518 +1.8 6.6 LSU ribosomal protein L25P compare
CCNA_02980 +1.8 13.3 tryptophan 2,3-dioxygenase compare
CCNA_01722 +1.8 5.7 hypothetical protein compare
CCNA_01526 +1.8 8.2 flagellar biosynthesis regulatory protein flaF compare
CCNA_03643 +1.8 2.9 succinate dehydrogenase membrane anchor subunit compare
CCNA_01525 +1.8 11.4 flagellar biosynthesis repressor flbT compare
CCNA_02133 +1.8 8.1 glucokinase compare
CCNA_01931 +1.8 11.8 TetR-family transcriptional regulator compare
CCNA_00962 +1.8 10.9 MarR-family transcriptional regulator compare
CCNA_03519 +1.8 12.8 PadR-family transcriptional regulator compare
CCNA_02448 +1.7 11.0 hypothetical protein compare
CCNA_01815 +1.7 12.9 nitrogen assimilation regulatory protein NtrC compare
CCNA_01242 +1.7 12.6 amino acid permease compare
CCNA_00044 +1.7 5.9 ribosome maturation protein RimP compare
CCNA_02037 +1.7 9.9 ATP-dependent endopeptidase Lon compare
CCNA_01751 +1.7 7.6 aminodeoxychorismate lyase compare
CCNA_02225 +1.7 10.3 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02419 +1.7 6.8 TonB1 protein compare
CCNA_03012 +1.7 10.6 peroxiredoxin compare
CCNA_02021 +1.7 7.6 hypothetical protein compare
CCNA_01968 +1.7 5.5 pentapeptide repeats containing protein compare
CCNA_00684 +1.7 10.1 anti-sigma factor, ChrR-family compare
CCNA_01814 +1.7 12.8 nitrogen regulation protein ntrB compare
CCNA_00924 +1.6 8.2 MarR/EmrR family transcriptional regulator compare
CCNA_02030 +1.6 4.3 hypothetical protein compare
CCNA_03479 +1.6 10.6 MarR-family transcriptional regulator compare
CCNA_01851 +1.6 13.1 quinol cytochrome oxidase polypeptide II compare
CCNA_01420 +1.6 7.6 NrdR family transcriptional regulator compare
CCNA_R0037 +1.6 7.4 tRNA-Glu compare
CCNA_01094 +1.6 4.7 hypothetical protein compare
CCNA_01684 +1.6 9.4 phenylalanine-4-hydroxylase compare
CCNA_00043 +1.6 7.2 N utilization substance protein A NusA compare
CCNA_01690 +1.6 5.3 MAPEG family membrane protein compare
CCNA_01573 +1.6 9.8 ArsR-family transcriptional regulator compare
CCNA_00954 +1.6 12.3 AAA-family response regulator flbD compare
CCNA_03072 +1.6 5.5 TetR-family transcriptional regulator compare
CCNA_01295 +1.6 9.5 integral membrane protein compare
CCNA_03271 +1.6 12.3 methionine gamma-lyase compare
CCNA_02127 +1.6 11.2 oxacillin resistance-associated protein fmtC compare
CCNA_01942 +1.5 8.4 Rrf2 family protein compare
CCNA_01790 +1.5 7.8 protein translocase subunit secG compare
CCNA_01840 +1.5 12.8 MerR-family transcriptional regulator compare
CCNA_00769 +1.5 8.7 TetR family transcriptional regulator compare
CCNA_01186 +1.5 9.3 hypothetical protein compare
CCNA_03989 +1.5 11.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03325 +1.5 7.2 hypothetical protein compare
CCNA_03938 +1.5 4.3 hypothetical protein compare
CCNA_02447 +1.5 8.7 PspA/IM30 family regulatory protein compare
CCNA_03612 +1.5 11.4 HTH XRE-family transcriptional regulator compare
CCNA_00950 +1.5 11.3 flagellar M-ring protein FliF compare
CCNA_01063 +1.5 9.0 UDP-perosamine 4-acetyl transferase compare
CCNA_01730 +1.5 8.8 amidophosphoribosyltransferase compare
CCNA_02910 +1.5 12.6 TonB-dependent receptor compare
CCNA_00527 +1.5 8.4 hypothetical protein compare
CCNA_03280 +1.5 13.3 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00163 +1.5 10.0 exopolysaccharide transport family protein compare
CCNA_00781 +1.4 11.5 two-component receiver protein CpdR compare
CCNA_02616 +1.4 10.5 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01008 +1.4 11.3 urocanate hydratase compare
CCNA_02617 +1.4 11.6 histidinol-phosphate aminotransferase compare
CCNA_02316 +1.4 8.2 hypothetical protein compare
CCNA_03940 +1.4 3.5 hypothetical protein compare
CCNA_00104 +1.4 9.1 orotidine 5'-phosphate decarboxylase compare
CCNA_02025 +1.4 3.3 hypothetical protein compare
CCNA_01453 +1.4 5.3 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01691 +1.4 7.4 tRNA/rRNA methyltransferase compare
CCNA_01655 +1.4 9.2 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03123 +1.4 9.5 ArsR-family transcriptional regulator compare
CCNA_02526 +1.4 10.1 dihydroorotase compare
CCNA_00846 +1.4 12.6 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02416 +1.4 8.4 DNA-binding protein HU compare
CCNA_00675 +1.4 6.9 VapC-like PIN domain ribonuclease compare
CCNA_02151 +1.4 4.6 exodeoxyribonuclease VII small subunit compare
CCNA_01235 +1.4 8.3 AcrR-family transcriptional regulator compare
CCNA_03863 +1.4 4.4 hypothetical protein compare
CCNA_00168 +1.4 11.0 polysaccharide export protein compare
CCNA_03936 +1.4 8.9 hypothetical protein compare
CCNA_01801 +1.4 5.9 hypothetical protein compare
CCNA_01913 +1.4 10.6 MarR-family transcriptional regulator compare
CCNA_01393 +1.4 10.6 soluble lytic murein transglycosylase compare
CCNA_03464 +1.4 6.0 glycine cleavage system H protein compare
CCNA_00031 +1.4 8.1 toxin protein VapC compare
CCNA_03129 +1.4 10.1 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03420 +1.4 7.6 hypothetical protein compare
CCNA_01006 +1.4 5.9 flagellar hook-basal body complex protein FliE compare
CCNA_00920 +1.4 6.9 hypothetical protein compare
CCNA_03961 +1.4 7.1 hypothetical protein compare
CCNA_02339 +1.4 9.2 methyltransferase compare
CCNA_03681 +1.4 9.7 ABC transporter ATP-binding protein compare
CCNA_02073 +1.4 5.6 cupin domain transcriptional regulator compare
CCNA_03062 +1.3 9.2 cell wall hydrolase family protein compare
CCNA_00998 +1.3 8.3 ROS/MUCR transcriptional regulator compare
CCNA_00953 +1.3 6.5 flagellar motor switch protein FliN compare
CCNA_03379 +1.3 3.3 Cro/CI family transcriptional regulator compare
CCNA_03858 +1.3 9.5 protein translocase subunit secB compare
CCNA_00505 +1.3 7.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03959 +1.3 1.4 hypothetical protein compare
CCNA_02591 +1.3 7.1 glutaredoxin compare
CCNA_03689 +1.3 10.7 alanine dehydrogenase compare
CCNA_01729 +1.3 3.5 transporter, sodium/bile acid symporter family compare
CCNA_02576 +1.3 10.5 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01850 +1.3 10.3 quinol cytochrome oxidase polypeptide I compare
CCNA_02525 +1.3 7.7 aspartate carbamoyltransferase compare
CCNA_02289 +1.3 9.6 MarR/EmrR family transcriptional regulator compare
CCNA_01804 +1.3 8.8 glutathione peroxidase compare
CCNA_02619 +1.3 10.1 stomatin/prohibitin-related protein compare
CCNA_03518 +1.3 10.7 cytochrome c oxidase polypeptide II coxB compare
CCNA_02663 +1.3 3.1 DnaK suppressor protein DksA compare
CCNA_01827 +1.3 4.8 cobyric acid synthase CobQ compare
CCNA_00952 +1.3 7.7 flagellar assembly protein FlbE/FliH compare
CCNA_03281 +1.3 9.4 AsnC-family transcriptional regulator compare
CCNA_02315 +1.3 5.1 Cro/CI-family transcriptional regulator compare
CCNA_00834 +1.3 6.9 flagellin FljM compare
CCNA_03136 +1.3 4.7 flagellar export protein FliJ compare
CCNA_01375 +1.3 3.9 lactoylglutathione lyase compare
CCNA_03289 +1.3 4.4 HicB-family RNA-binding protein compare
CCNA_03498 +1.3 7.4 MarR-family transcriptional regulator compare
CCNA_01775 +1.2 5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_00133 +1.2 8.8 radical SAM family enzyme compare
CCNA_02664 +1.2 2.3 flagellar assembly regulator FliX compare
CCNA_00944 +1.2 7.6 flagellar hook length determination protein compare
CCNA_03762 +1.2 3.6 acetolactate synthase-related protein compare
CCNA_01848 +1.2 8.0 quinol cytochrome oxidase polypeptide IV compare
CCNA_01731 +1.2 6.6 colicin V production protein CvpA compare
CCNA_01009 +1.2 7.8 N-formylglutamate deformylase compare
CCNA_02242 +1.2 9.5 PHB granule-associated protein, phasin2 compare
CCNA_01007 +1.2 2.8 hypothetical protein compare
CCNA_01181 +1.2 7.1 hypothetical protein compare
CCNA_02243 +1.2 9.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01556 +1.2 1.6 LacI-family transcriptional regulator compare
CCNA_00028 +1.2 4.1 TonB-dependent receptor compare
CCNA_00497 +1.2 8.4 putative rhamnosyl transferase compare
CCNA_03215 +1.2 8.4 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02341 +1.2 7.0 small heat shock protein compare
CCNA_01619 +1.2 7.3 NYN domain protein compare
CCNA_01677 +1.2 6.8 carboxypeptidase G2 precursor compare
CCNA_00947 +1.2 9.8 flagellar hook protein FlgE compare
CCNA_03515 +1.2 3.9 hypothetical protein compare
CCNA_00164 +1.2 9.0 O-antigen polymerase compare
CCNA_01742 +1.2 6.1 hypothetical protein compare
CCNA_03680 +1.2 10.8 aminopeptidase N compare
CCNA_01433 +1.2 3.9 integration host factor alpha-subunit compare
CCNA_01578 +1.2 6.5 beta-lactamase repressor compare
CCNA_01679 +1.2 7.9 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01802 +1.2 3.7 hypothetical protein compare
CCNA_00951 +1.2 7.9 flagellar motor switch protein FliG compare
CCNA_00375 +1.2 5.5 hypothetical protein compare
CCNA_03973 +1.2 2.2 hypothetical protein compare
CCNA_01926 +1.2 5.5 GGDEF diguanylate cyclase DgcB compare
CCNA_01533 +1.2 6.2 hypothetical protein compare
CCNA_02063 +1.2 7.0 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_R0054 +1.2 2.3 tRNA-Gly compare
CCNA_00945 +1.2 7.1 chemotaxis protein MotD compare
CCNA_03805 +1.2 8.0 PadR-family transcriptional regulator compare
CCNA_00354 +1.1 7.9 NlpC/P60 CHAP domain amidase protein compare
CCNA_00362 +1.1 4.5 zinc uptake regulation protein compare
CCNA_00872 +1.1 4.0 glutaredoxin compare
CCNA_03273 +1.1 5.8 hypothetical protein compare
CCNA_01918 +1.1 7.6 cyclic di-GMP effector protein PopA compare
CCNA_01406 +1.1 6.3 metal-dependent hydrolase compare
CCNA_02866 +1.1 4.5 hypothetical protein compare
CCNA_00895 +1.1 5.1 hypothetical protein compare
CCNA_00803 +1.1 6.0 chemotaxis protein cheW compare
CCNA_00013 +1.1 9.1 protein-PII uridylyltransferase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Chloramphenicol across organisms