Experiment set3IT065 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Tetracycline hydrochloride 0.0001 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.9 -6.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2823 -5.3 -7.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2825 -4.8 -5.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4352 -4.7 -5.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2824 -4.7 -14.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3460 -4.7 -3.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -4.5 -4.4 Cold shock protein CspC compare
Pf6N2E2_2646 -3.2 -3.1 FIG00953416: hypothetical protein compare
Pf6N2E2_2218 -3.2 -8.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3461 -3.0 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2217 -2.9 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4417 -2.2 -5.3 Protein of unknown function DUF484 compare
Pf6N2E2_3667 -2.2 -2.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4987 -1.9 -2.1 MaoC-like domain protein compare
Pf6N2E2_5006 -1.8 -8.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4204 -1.8 -2.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5339 -1.8 -5.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2480 -1.7 -2.5 FIG00957636: hypothetical protein compare
Pf6N2E2_3666 -1.7 -5.0 InaA protein compare
Pf6N2E2_3351 -1.7 -5.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3264 -1.7 -3.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2753 -1.6 -4.3 HtrA protease/chaperone protein compare
Pf6N2E2_5338 -1.6 -7.6 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4159 -1.6 -3.6 Cytochrome c4 compare
Pf6N2E2_2317 -1.5 -4.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_288 -1.5 -2.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4416 -1.5 -2.9 Tyrosine recombinase XerC compare
Pf6N2E2_5337 -1.5 -5.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3603 -1.4 -6.3 FIG003573: hypothetical protein compare
Pf6N2E2_3607 -1.4 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3027 -1.4 -2.3 Baseplate assembly protein V compare
Pf6N2E2_5534 -1.4 -5.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_5242 -1.3 -1.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3835 -1.3 -4.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3665 -1.3 -1.3 serine/threonine protein kinase compare
Pf6N2E2_2527 -1.3 -5.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5406 -1.3 -2.5 FIG00958224: hypothetical protein compare
Pf6N2E2_2318 -1.3 -7.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5430 -1.2 -8.1 Transglycosylase, Slt family compare
Pf6N2E2_4187 -1.2 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2940 -1.2 -5.1 OmpA family protein compare
Pf6N2E2_4162 -1.2 -2.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2605 -1.2 -4.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1034 -1.2 -2.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3908 -1.2 -5.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2325 -1.2 -5.3 Recombination protein RecR compare
Pf6N2E2_2274 -1.1 -4.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2552 -1.1 -6.4 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5155 -1.1 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2320 -1.1 -3.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5703 -1.1 -3.6 outer membrane protein H1 compare
Pf6N2E2_3039 -1.0 -5.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5156 -1.0 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4059 -1.0 -1.3 DNA-binding protein HU-alpha compare
Pf6N2E2_4362 -1.0 -2.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1987 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_1834 -1.0 -2.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4273 -1.0 -4.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4353 -1.0 -3.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3261 -1.0 -3.6 hypothetical protein compare
Pf6N2E2_5340 -1.0 -3.3 Stringent starvation protein A compare
Pf6N2E2_5014 -1.0 -1.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5428 -1.0 -5.2 DNA recombination and repair protein RecO compare
Pf6N2E2_2309 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_4197 -0.9 -6.1 DNA recombination and repair protein RecF compare
Pf6N2E2_4454 -0.9 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4372 -0.9 -3.2 FIG00460773: hypothetical protein compare
Pf6N2E2_2675 -0.9 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2314 -0.9 -3.0 VapB protein (antitoxin to VapC) compare
Pf6N2E2_4205 -0.9 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2473 -0.9 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_1315 -0.9 -1.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2606 -0.9 -4.6 hypothetical protein compare
Pf6N2E2_2264 -0.9 -3.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3060 -0.9 -2.3 Outer membrane protein H precursor compare
Pf6N2E2_2440 -0.8 -1.4 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_1147 -0.8 -1.8 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2340 -0.8 -4.0 Transcriptional regulator, GntR family compare
Pf6N2E2_2912 -0.8 -1.9 FIG00954094: hypothetical protein compare
Pf6N2E2_4803 -0.8 -1.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5830 -0.8 -3.2 FIG00960829: hypothetical protein compare
Pf6N2E2_3516 -0.8 -2.2 Probable transmembrane protein compare
Pf6N2E2_2126 -0.8 -4.5 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3656 -0.8 -3.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_2561 -0.8 -2.0 FIG00955434: hypothetical protein compare
Pf6N2E2_5993 -0.8 -2.3 FIG00957412: hypothetical protein compare
Pf6N2E2_3753 -0.8 -6.6 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_953 -0.8 -2.0 FIG00958851: hypothetical protein compare
Pf6N2E2_238 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2127 -0.8 -3.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2324 -0.8 -1.8 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3258 -0.8 -3.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_1606 -0.8 -3.3 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_3947 -0.8 -1.6 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_2124 -0.8 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2465 -0.7 -4.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4369 -0.7 -1.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4153 -0.7 -1.2 Sensory box histidine kinase compare
Pf6N2E2_3198 -0.7 -1.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5183 -0.7 -5.4 Paraquat-inducible protein B compare
Pf6N2E2_2992 -0.7 -2.6 Regulatory protein RecX compare
Pf6N2E2_58 -0.7 -2.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2428 -0.7 -2.4 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2869 -0.7 -1.2 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4928 -0.7 -1.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_62 -0.7 -2.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1352 -0.7 -2.3 Cation transport ATPase compare
Pf6N2E2_5219 -0.7 -3.7 FIG140336: TPR domain protein compare
Pf6N2E2_4773 -0.7 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2261 -0.7 -4.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_5677 -0.7 -1.4 Carbon storage regulator compare
Pf6N2E2_855 -0.7 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2367 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4206 -0.7 -1.0 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1347 -0.7 -2.4 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2633 -0.7 -2.6 Nitroreductase family protein compare
Pf6N2E2_3782 -0.7 -2.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5536 -0.7 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_464 -0.7 -2.0 Sensory histidine kinase QseC compare
Pf6N2E2_5103 -0.7 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3589 -0.7 -1.2 Lysine decarboxylase family compare
Pf6N2E2_43 -0.7 -3.3 Histidine permease YuiF compare
Pf6N2E2_4918 -0.7 -1.9 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5331 -0.7 -3.9 ATPase, AFG1 family compare
Pf6N2E2_1545 -0.7 -2.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5001 -0.7 -1.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4732 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_927 -0.6 -2.9 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3260 -0.6 -3.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4365 -0.6 -3.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_2899 -0.6 -3.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_81 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_4155 -0.6 -4.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3847 -0.6 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2310 -0.6 -4.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2182 -0.6 -2.9 hypothetical protein compare
Pf6N2E2_5727 -0.6 -3.4 FIG00955360: hypothetical protein compare
Pf6N2E2_4591 -0.6 -3.6 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_2694 -0.6 -3.8 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_4611 -0.6 -2.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2277 -0.6 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5182 -0.6 -4.2 Paraquat-inducible protein A compare
Pf6N2E2_5646 -0.6 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1743 -0.6 -2.1 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_68 -0.6 -3.2 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_3303 -0.6 -2.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5671 -0.6 -2.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3786 -0.6 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_4638 -0.6 -1.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2973 -0.6 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4762 -0.6 -1.7 Biotin synthesis protein BioH compare
Pf6N2E2_3515 -0.6 -3.2 Probable transmembrane protein compare
Pf6N2E2_4607 -0.6 -2.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_4747 -0.6 -1.5 Transmembrane sensor compare
Pf6N2E2_2188 -0.6 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_5181 -0.6 -4.2 Paraquat-inducible protein A compare
Pf6N2E2_3783 -0.6 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_1403 -0.6 -2.1 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_2279 -0.6 -2.4 FIG00954981: hypothetical protein compare
Pf6N2E2_2258 -0.6 -3.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5069 -0.6 -2.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5086 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_2189 -0.6 -3.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_622 -0.6 -2.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4545 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_4886 -0.6 -4.2 Catalase (EC 1.11.1.6) compare
Pf6N2E2_5594 -0.6 -3.0 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2755 -0.5 -1.5 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2984 -0.5 -1.5 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2081 -0.5 -1.3 putative exported protein compare
Pf6N2E2_600 -0.5 -0.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_6075 -0.5 -1.6 Chromosome segregation ATPases compare
Pf6N2E2_1095 -0.5 -1.5 Opine oxidase subunit C compare
Pf6N2E2_1652 -0.5 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3257 -0.5 -1.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4843 -0.5 -2.5 FIG00956941: hypothetical protein compare
Pf6N2E2_4764 -0.5 -2.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1323 -0.5 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1303 -0.5 -1.4 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_1844 -0.5 -2.0 MaoC-related acyl dehydratase compare
Pf6N2E2_2043 -0.5 -3.1 Twitching motility protein PilT compare
Pf6N2E2_2588 -0.5 -1.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1625 -0.5 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3498 -0.5 -1.7 FIG00953349: hypothetical protein compare
Pf6N2E2_1636 -0.5 -3.4 Ferrichrome-iron receptor compare
Pf6N2E2_3328 -0.5 -1.3 transcriptional regulator compare
Pf6N2E2_5316 -0.5 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1972 -0.5 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1806 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_3534 -0.5 -1.4 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_2112 -0.5 -2.0 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_1506 -0.5 -1.3 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_4615 -0.5 -1.3 type IV pili signal transduction protein PilI compare
Pf6N2E2_156 -0.5 -1.2 Carbon storage regulator compare
Pf6N2E2_1917 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_4479 -0.5 -1.2 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2311 -0.5 -2.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3255 -0.5 -1.7 YrbA protein compare
Pf6N2E2_291 -0.5 -2.5 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3494 -0.5 -2.1 Acyl dehydratase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Tetracycline hydrochloride across organisms