Experiment set3IT065 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS03450 -9.3 -4.0 glycine synthesis protein GlyXS (from data) compare
MMP_RS06120 -7.6 -3.7 UPF0147 family protein compare
MMP_RS05500 -6.2 -11.0 2-isopropylmalate synthase compare
MMP_RS07345 -5.8 -8.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS06975 -5.7 -3.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS02280 -5.4 -1.4 DUF211 domain-containing protein compare
MMP_RS06625 -5.1 -4.3 DNA primase compare
MMP_RS03035 -5.1 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01455 -5.0 -9.8 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03435 -5.0 -2.9 ketol-acid reductoisomerase compare
MMP_RS02900 -4.9 -1.2 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS05555 -4.3 -2.1 DUF4040 domain-containing protein compare
MMP_RS04215 -4.3 -9.3 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01955 -4.2 -3.9 hypothetical protein compare
MMP_RS05265 -4.2 -4.5 2-isopropylmalate synthase compare
MMP_RS07185 -4.2 -20.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00750 -3.9 -4.3 fumarate hydratase compare
MMP_RS01005 -3.9 -2.0 riboflavin synthase compare
MMP_RS06270 -3.8 -8.9 TIGR00300 family protein compare
MMP_RS07845 -3.8 -4.6 LL-diaminopimelate aminotransferase compare
MMP_RS06375 -3.8 -6.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS05930 -3.8 -3.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS01020 -3.8 -1.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS07555 -3.7 -1.3 monovalent cation/H+ antiporter subunit E compare
MMP_RS03700 -3.6 -10.7 sodium:proton antiporter compare
MMP_RS05425 -3.5 -6.3 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01910 -3.4 -10.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS00305 -3.4 -3.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS03600 -3.4 -4.6 triose-phosphate isomerase compare
MMP_RS00695 -3.4 -1.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01915 -3.3 -14.3 DUF354 domain-containing protein compare
MMP_RS03390 -3.3 -7.8 malate dehydrogenase compare
MMP_RS01925 -3.2 -10.8 DUF1616 domain-containing protein compare
MMP_RS02135 -3.2 -8.7 DUF5612 domain-containing protein compare
MMP_RS04500 -3.2 -20.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08790 -3.2 -4.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS04890 -3.1 -1.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01905 -3.1 -16.4 glycosyltransferase compare
MMP_RS02345 -3.0 -5.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS01385 -3.0 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07730 -3.0 -2.5 pyruvate synthase subunit beta compare
MMP_RS03475 -3.0 -1.3 hypothetical protein compare
MMP_RS08440 -3.0 -6.7 cell division protein SepF compare
MMP_RS01900 -2.9 -16.0 hypothetical protein compare
MMP_RS03315 -2.9 -2.4 ferrous iron transport protein A compare
MMP_RS02145 -2.9 -8.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS08210 -2.9 -2.7 phosphatidylglycerophosphatase A compare
MMP_RS05345 -2.9 -9.0 hypothetical protein compare
MMP_RS07955 -2.9 -8.2 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS01920 -2.9 -13.2 glycosyltransferase family 2 protein compare
MMP_RS06370 -2.9 -7.0 biotin synthase BioB compare
MMP_RS07755 -2.9 -2.6 DUF555 domain-containing protein compare
MMP_RS08300 -2.8 -2.3 metal-sulfur cluster assembly factor compare
MMP_RS02010 -2.8 -11.2 PHP domain-containing protein compare
MMP_RS08460 -2.8 -4.7 proteasome-activating nucleotidase compare
MMP_RS01830 -2.8 -3.2 tRNA-Val compare
MMP_RS06730 -2.8 -3.0 phosphopantothenate/pantothenate synthetase compare
MMP_RS07380 -2.7 -3.7 transcription elongation factor Spt5 compare
MMP_RS02240 -2.7 -6.2 methanogenesis marker 7 protein compare
MMP_RS08595 -2.7 -2.2 flagellar protein C compare
MMP_RS08820 -2.7 -8.8 hypothetical protein compare
MMP_RS01225 -2.7 -6.9 DUF5379 domain-containing protein compare
MMP_RS08095 -2.7 -9.8 dethiobiotin synthase compare
MMP_RS01700 -2.7 -1.8 dihydroxy-acid dehydratase compare
MMP_RS00515 -2.6 -1.9 DUF655 domain-containing protein compare
MMP_RS07605 -2.6 -6.6 diadenylate cyclase compare
MMP_RS01895 -2.6 -14.4 flippase compare
MMP_RS02195 -2.6 -6.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06475 -2.6 -7.2 FAD-dependent oxidoreductase compare
MMP_RS05640 -2.6 -7.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS09020 -2.6 -2.0 hypothetical protein compare
MMP_RS00110 -2.6 -5.7 hypothetical protein compare
MMP_RS07580 -2.6 -4.4 DUF356 domain-containing protein compare
MMP_RS04685 -2.5 -5.4 DUF126 domain-containing protein compare
MMP_RS01175 -2.5 -6.0 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06285 -2.5 -3.6 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08105 -2.5 -11.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS08650 -2.5 -5.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS01885 -2.5 -8.7 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08435 -2.5 -3.7 Era-like GTP-binding protein compare
MMP_RS01725 -2.5 -7.9 class I SAM-dependent methyltransferase family protein compare
MMP_RS07390 -2.4 -3.7 cell division protein FtsZ compare
MMP_RS05815 -2.4 -4.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS00300 -2.4 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS07750 -2.3 -7.4 DUF357 domain-containing protein compare
MMP_RS07645 -2.3 -9.6 aldehyde dehydrogenase family protein compare
MMP_RS08100 -2.3 -7.8 8-amino-7-oxononanoate synthase compare
MMP_RS01325 -2.3 -3.8 dihydroneopterin aldolase family protein compare
MMP_RS01795 -2.3 -2.9 methanogenesis marker 6 protein compare
MMP_RS07735 -2.3 -1.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06930 -2.3 -12.4 MBL fold metallo-hydrolase compare
MMP_RS03400 -2.3 -4.8 archease compare
MMP_RS08635 -2.3 -2.6 UbiA family prenyltransferase compare
MMP_RS01890 -2.3 -5.3 nucleotide sugar dehydrogenase compare
MMP_RS04720 -2.3 -4.1 DedA family protein compare
MMP_RS01975 -2.3 -13.5 hypothetical protein compare
MMP_RS06885 -2.2 -3.9 50S ribosome-binding GTPase compare
MMP_RS06630 -2.2 -1.7 UPF0058 family protein compare
MMP_RS05920 -2.2 -1.2 50S ribosomal protein L37e compare
MMP_RS01755 -2.2 -2.2 DUF2097 domain-containing protein compare
MMP_RS01970 -2.2 -8.6 TIGR04279 domain-containing protein compare
MMP_RS05845 -2.2 -3.0 tRNA-intron lyase compare
MMP_RS01800 -2.2 -4.9 TIGR00303 family protein compare
MMP_RS06230 -2.2 -3.6 helix-turn-helix domain-containing protein compare
MMP_RS04710 -2.2 -2.3 hypothetical protein compare
MMP_RS07005 -2.2 -1.2 4Fe-4S binding protein compare
MMP_RS05250 -2.1 -3.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01875 -2.1 -9.9 N-acetyltransferase compare
MMP_RS00895 -2.1 -7.2 hypothetical protein compare
MMP_RS00520 -2.1 -3.0 RNA polymerase Rpb4 family protein compare
MMP_RS01610 -2.1 -5.1 hypothetical protein compare
MMP_RS07600 -2.1 -4.1 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01380 -2.1 -3.5 PHP domain-containing protein compare
MMP_RS04780 -2.1 -3.5 ribonuclease P compare
MMP_RS04790 -2.1 -13.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS06670 -2.1 -5.3 glucose-6-phosphate isomerase compare
MMP_RS03025 -2.1 -8.5 molybdenum cofactor guanylyltransferase compare
MMP_RS08330 -2.0 -6.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS03580 -2.0 -5.2 signal recognition particle-docking protein FtsY compare
MMP_RS06310 -2.0 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS07075 -2.0 -3.7 phosphomannomutase/phosphoglucomutase compare
MMP_RS04775 -2.0 -3.8 adenosylhomocysteinase compare
MMP_RS00685 -1.9 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06925 -1.9 -3.6 ribonuclease VapC4 compare
MMP_RS06895 -1.9 -2.9 selenocysteine-specific translation elongation factor compare
MMP_RS01500 -1.9 -3.7 CBS domain-containing protein compare
MMP_RS07710 -1.9 -5.0 cell division protein FtsZ compare
MMP_RS01940 -1.8 -5.6 MoxR family ATPase compare
MMP_RS05925 -1.8 -4.6 small nuclear ribonucleoprotein compare
MMP_RS08745 -1.8 -6.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01960 -1.8 -0.8 hypothetical protein compare
MMP_RS03445 -1.8 -1.8 methanogenesis marker 17 protein compare
MMP_RS07875 -1.8 -7.4 hypothetical protein compare
MMP_RS08760 -1.8 -2.4 hypothetical protein compare
MMP_RS06400 -1.8 -1.6 4Fe-4S binding protein compare
MMP_RS07195 -1.8 -10.8 M20 family metallo-hydrolase compare
MMP_RS06340 -1.8 -7.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS04615 -1.7 -4.3 PDGLE domain-containing protein compare
MMP_RS01930 -1.7 -11.8 hypothetical protein compare
MMP_RS04605 -1.7 -7.7 cobalt ECF transporter T component CbiQ compare
MMP_RS08715 -1.7 -2.0 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04585 -1.7 -9.9 AIR synthase related protein compare
MMP_RS01880 -1.7 -5.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS06865 -1.7 -2.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS02245 -1.6 -4.1 hypothetical protein compare
MMP_RS06020 -1.6 -5.8 archaeoflavoprotein AfpA compare
MMP_RS06940 -1.6 -3.7 polyprenyl diphosphate synthase compare
MMP_RS07355 -1.6 -1.4 transcription factor S compare
MMP_RS06295 -1.6 -6.3 methanogenesis marker 14 protein compare
MMP_RS01265 -1.6 -2.8 hypothetical protein compare
MMP_RS06105 -1.6 -9.1 hydrogenase maturation peptidase HycI compare
MMP_RS01935 -1.5 -8.5 DUF58 domain-containing protein compare
MMP_RS01950 -1.5 -8.1 hypothetical protein compare
MMP_RS02800 -1.5 -5.7 nucleotidyltransferase domain-containing protein compare
MMP_RS07200 -1.5 -6.1 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00810 -1.5 -8.4 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03205 -1.5 -1.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS01945 -1.5 -7.2 DUF4350 domain-containing protein compare
MMP_RS08195 -1.5 -9.4 hypothetical protein compare
MMP_RS08340 -1.5 -5.2 4Fe-4S binding protein compare
MMP_RS06900 -1.5 -4.6 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00720 -1.5 -7.9 metal-dependent hydrolase compare
MMP_RS04620 -1.5 -9.5 cobalt transporter CbiM compare
MMP_RS07635 -1.5 -6.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06980 -1.5 -7.8 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01220 -1.5 -8.2 hypothetical protein compare
MMP_RS08445 -1.5 -5.4 DUF2099 family protein compare
MMP_RS05550 -1.5 -1.0 cation:proton antiporter compare
MMP_RS02340 -1.5 -1.9 DNA-directed RNA polymerase subunit E'' compare
MMP_RS02875 -1.4 -9.4 chorismate pyruvate-lyase family protein compare
MMP_RS04090 -1.4 -3.0 hypothetical protein compare
MMP_RS07420 -1.4 -6.0 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS07090 -1.4 -7.5 tRNA (adenine-N1)-methyltransferase compare
MMP_RS07545 -1.4 -1.4 HTH domain-containing protein compare
MMP_RS03640 -1.4 -3.1 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS03140 -1.4 -10.3 hypothetical protein compare
MMP_RS03145 -1.3 -8.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08335 -1.3 -6.0 NADH-quinone oxidoreductase subunit B family protein compare
MMP_RS01545 -1.3 -1.6 CBS domain-containing protein compare
MMP_RS01365 -1.3 -2.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS06130 -1.3 -4.5 peptidylprolyl isomerase compare
MMP_RS07575 -1.3 -2.0 RNA ligase partner protein compare
MMP_RS08370 -1.3 -0.9 cation:proton antiporter subunit C compare
MMP_RS07385 -1.3 -1.3 protein translocase SEC61 complex subunit gamma compare
MMP_RS05430 -1.3 -3.0 TIGR00288 family NYN domain-containing protein compare
MMP_RS02190 -1.3 -3.4 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS08165 -1.3 -2.7 phosphoglycerate dehydrogenase compare
MMP_RS07695 -1.3 -6.2 DUF3236 domain-containing protein compare
MMP_RS08840 -1.3 -9.3 class I SAM-dependent methyltransferase compare
MMP_RS03095 -1.2 -7.1 diphthine synthase compare
MMP_RS08365 -1.2 -3.6 energy conserving hydrogenase EhbF compare
MMP_RS08785 -1.2 -1.6 RNA-protein complex protein Nop10 compare
MMP_RS08355 -1.2 -4.4 Na(+)/H(+) antiporter subunit B compare
MMP_RS01665 -1.2 -3.7 DUF2111 domain-containing protein compare
MMP_RS04850 -1.2 -9.4 UPF0254 family protein compare
MMP_RS06350 -1.2 -6.1 HesA/MoeB/ThiF family protein compare
MMP_RS04875 -1.2 -5.6 energy-converting hydrogenase B subunit P compare
MMP_RS03960 -1.2 -1.3 hypothetical protein compare
MMP_RS04955 -1.2 -4.8 DNA topoisomerase I compare
MMP_RS00320 -1.2 -2.6 class I SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms