Experiment set3IT065 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Fusidic acid sodium salt 0.4 mg/ml

200 most important genes:

  gene name fitness t score description  
ABZR86_RS06275 -7.1 -4.9 DUF6165 family protein compare
ABZR86_RS11885 -6.8 -4.7 ATP-binding cassette domain-containing protein compare
ABZR86_RS18720 -6.3 -4.4 dTDP-4-dehydrorhamnose reductase compare
ABZR86_RS11870 -6.2 -10.4 phospholipid-binding protein MlaC compare
ABZR86_RS07175 -5.8 -4.0 sigma-E factor negative regulatory protein compare
ABZR86_RS20775 -5.7 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS06270 -5.6 -5.4 glycosyltransferase family 9 protein compare
ABZR86_RS22135 -5.0 -4.8 hypothetical protein compare
ABZR86_RS08865 -4.8 -2.1 30S ribosomal protein S18 compare
ABZR86_RS06580 -4.7 -3.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS08860 -4.7 -5.6 50S ribosomal protein L9 compare
ABZR86_RS14690 -4.6 -6.3 phosphogluconate dehydratase compare
ABZR86_RS07565 -4.5 -15.9 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS00790 -4.5 -7.5 hypothetical protein compare
ABZR86_RS17510 -4.5 -15.9 carboxy terminal-processing peptidase compare
ABZR86_RS09400 -4.4 -5.3 MtnX-like HAD-IB family phosphatase compare
ABZR86_RS19720 -4.4 -12.0 ATP-dependent RNA helicase HrpA compare
ABZR86_RS17180 -4.4 -10.3 glycosyltransferase compare
ABZR86_RS06030 -4.4 -1.9 transcription termination factor NusA compare
ABZR86_RS07570 -4.4 -14.4 efflux RND transporter permease subunit compare
ABZR86_RS21315 -4.3 -8.5 GldG family protein compare
ABZR86_RS21435 -4.3 -5.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS17210 -4.1 -14.1 TolC family outer membrane protein compare
ABZR86_RS00725 -4.1 -15.9 M48 family metalloprotease compare
ABZR86_RS10710 -4.0 -2.8 transcriptional regulator NrdR compare
ABZR86_RS09395 -3.9 -12.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS19445 -3.9 -6.7 hypothetical protein compare
ABZR86_RS11880 -3.9 -4.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS19710 -3.9 -13.9 glycosyltransferase family 2 protein compare
ABZR86_RS11875 -3.8 -9.6 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS11270 -3.8 -9.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR86_RS05700 -3.8 -2.6 SsrA-binding protein SmpB compare
ABZR86_RS07180 -3.8 -2.6 RNA polymerase sigma factor RpoE compare
ABZR86_RS09840 -3.8 -1.6 Trm112 family protein compare
ABZR86_RS21335 -3.7 -1.6 response regulator transcription factor compare
ABZR86_RS07215 -3.7 -3.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS12590 -3.7 -13.9 permease-like cell division protein FtsX compare
ABZR86_RS07340 -3.6 -2.7 tRNA-Leu compare
ABZR86_RS21480 -3.6 -7.3 arginase family protein compare
ABZR86_RS17155 -3.5 -6.4 mitochondrial fission ELM1 family protein compare
ABZR86_RS15020 -3.5 -2.4 DUF484 family protein compare
ABZR86_RS18365 -3.4 -15.4 ATP-binding protein compare
ABZR86_RS18360 -3.4 -11.6 response regulator transcription factor compare
ABZR86_RS05550 -3.4 -2.3 lipopolysaccharide assembly protein LapB compare
ABZR86_RS18735 -3.4 -8.0 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS17075 -3.4 -5.9 four helix bundle protein compare
ABZR86_RS13895 -3.4 -13.6 glycosyltransferase family 39 protein compare
ABZR86_RS08430 -3.4 -3.3 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS21730 -3.3 -9.7 ribonuclease G compare
ABZR86_RS06360 -3.3 -7.8 cell wall hydrolase compare
ABZR86_RS21725 -3.3 -11.9 YhdP family protein compare
ABZR86_RS09380 -3.3 -5.4 response regulator transcription factor compare
ABZR86_RS14750 -3.2 -11.7 MATE family efflux transporter compare
ABZR86_RS00650 -3.2 -18.3 TonB-dependent receptor compare
ABZR86_RS18715 -3.1 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS13935 -3.0 -4.0 lipid A biosynthesis acyltransferase compare
ABZR86_RS14755 -3.0 -4.7 DUF2239 family protein compare
ABZR86_RS12885 -3.0 -2.1 magnesium-translocating P-type ATPase compare
ABZR86_RS16680 -3.0 -2.3 AI-2E family transporter compare
ABZR86_RS07165 -3.0 -10.7 translation elongation factor 4 compare
ABZR86_RS21325 -3.0 -3.4 ABC transporter ATP-binding protein compare
ABZR86_RS12835 -3.0 -5.0 DedA family protein compare
ABZR86_RS13350 -3.0 -11.4 S41 family peptidase compare
ABZR86_RS12595 -3.0 -1.8 cell division ATP-binding protein FtsE compare
ABZR86_RS13920 -2.9 -13.0 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS08250 -2.9 -2.6 phosphate signaling complex protein PhoU compare
ABZR86_RS19990 -2.9 -4.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABZR86_RS19865 -2.8 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS13355 -2.8 -9.9 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS18695 -2.8 -4.3 hypothetical protein compare
ABZR86_RS21340 -2.8 -10.4 sensor histidine kinase compare
ABZR86_RS07335 -2.8 -8.3 trigger factor compare
ABZR86_RS06265 -2.8 -4.7 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS10840 -2.7 -2.0 Holliday junction branch migration protein RuvA compare
ABZR86_RS17185 -2.6 -8.8 O-antigen ligase family protein compare
ABZR86_RS09410 -2.6 -6.4 FtsX-like permease family protein compare
ABZR86_RS10975 -2.6 -6.2 GNAT family N-acetyltransferase compare
ABZR86_RS05570 -2.6 -4.9 (d)CMP kinase compare
ABZR86_RS15640 -2.6 -1.8 orotate phosphoribosyltransferase compare
ABZR86_RS18730 -2.5 -5.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS09405 -2.5 -7.3 TolC family protein compare
ABZR86_RS18705 -2.5 -1.7 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS09415 -2.5 -6.2 ABC transporter ATP-binding protein compare
ABZR86_RS10505 -2.5 -4.1 ribosomal protein S18-alanine N-acetyltransferase compare
ABZR86_RS19515 -2.4 -8.6 molybdopterin cofactor-binding domain-containing protein compare
ABZR86_RS02795 -2.4 -1.8 phosphoglycerate mutase compare
ABZR86_RS08415 -2.4 -2.6 OmpA family protein compare
ABZR86_RS09805 -2.3 -9.8 lysophospholipid acyltransferase family protein compare
ABZR86_RS11485 -2.3 -5.6 hypothetical protein compare
ABZR86_RS06595 -2.3 -5.1 5'/3'-nucleotidase SurE compare
ABZR86_RS09145 -2.3 -2.9 hypothetical protein compare
ABZR86_RS07300 -2.3 -8.9 SurA N-terminal domain-containing protein compare
ABZR86_RS09075 -2.3 -1.4 NrsF family protein compare
ABZR86_RS10205 -2.3 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS18960 -2.2 -5.6 TetR/AcrR family transcriptional regulator compare
ABZR86_RS13380 -2.2 -1.7 Sec-independent protein translocase subunit TatA compare
ABZR86_RS13370 -2.2 -7.0 twin-arginine translocase subunit TatC compare
ABZR86_RS21320 -2.2 -7.6 ABC transporter permease subunit compare
ABZR86_RS19800 -2.2 -7.4 RNase adapter RapZ compare
ABZR86_RS11815 -2.2 -6.0 penicillin-binding protein 1A compare
ABZR86_RS17540 -2.1 -7.4 substrate-binding domain-containing protein compare
ABZR86_RS08435 -2.1 -4.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS02195 -2.1 -4.3 ATP-dependent Clp protease adapter ClpS compare
ABZR86_RS19245 -2.1 -4.3 glycosyltransferase family 2 protein compare
ABZR86_RS06590 -2.1 -2.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS06785 -2.1 -2.8 SPOR domain-containing protein compare
ABZR86_RS16140 -2.1 -6.7 outer membrane beta-barrel protein compare
ABZR86_RS12745 -2.1 -8.9 transglycosylase SLT domain-containing protein compare
ABZR86_RS02210 -2.1 -3.7 polyhydroxyalkanoic acid system family protein compare
ABZR86_RS18450 -2.0 -2.0 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS05440 -2.0 -4.2 tetratricopeptide repeat protein compare
ABZR86_RS21505 -2.0 -3.7 8-oxo-dGTP diphosphatase compare
ABZR86_RS12960 -2.0 -1.6 hypothetical protein compare
ABZR86_RS12280 -2.0 -1.7 dihydrolipoyl dehydrogenase compare
ABZR86_RS18690 -2.0 -3.2 DUF4398 domain-containing protein compare
ABZR86_RS21420 -2.0 -4.3 alpha/beta fold hydrolase compare
ABZR86_RS08350 -2.0 -5.0 protease modulator HflC compare
ABZR86_RS09300 -1.9 -9.5 C40 family peptidase compare
ABZR86_RS09935 -1.9 -1.3 DUF4105 domain-containing protein compare
ABZR86_RS06585 -1.9 -2.4 YqaA family protein compare
ABZR86_RS01885 -1.9 -1.1 DUF5668 domain-containing protein compare
ABZR86_RS16525 -1.8 -4.6 alpha/beta fold hydrolase compare
ABZR86_RS06260 -1.8 -4.3 MBL fold metallo-hydrolase compare
ABZR86_RS12415 -1.8 -2.6 NADP-dependent malic enzyme compare
ABZR86_RS18815 -1.8 -3.1 FAD-binding protein compare
ABZR86_RS09385 -1.8 -2.9 sensor histidine kinase compare
ABZR86_RS15705 -1.8 -5.6 rhomboid family intramembrane serine protease compare
ABZR86_RS09885 -1.8 -1.7 trypsin-like peptidase domain-containing protein compare
ABZR86_RS05690 -1.8 -1.1 RnfH family protein compare
ABZR86_RS22045 -1.7 -5.7 tetratricopeptide repeat protein compare
ABZR86_RS13865 -1.7 -1.1 DNA topoisomerase I compare
ABZR86_RS13575 -1.7 -0.8 phosphopantetheine-binding protein compare
ABZR86_RS15265 -1.7 -5.6 DJ-1/PfpI family protein compare
ABZR86_RS09660 -1.7 -2.8 MerR family transcriptional regulator compare
ABZR86_RS09535 -1.7 -1.3 preprotein translocase subunit YajC compare
ABZR86_RS02180 -1.7 -3.4 high frequency lysogenization protein HflD compare
ABZR86_RS17480 -1.7 -5.8 lytic murein transglycosylase B compare
ABZR86_RS19740 -1.6 -9.6 penicillin-binding protein 1B compare
ABZR86_RS02170 -1.6 -9.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABZR86_RS18585 -1.6 -6.3 polysaccharide biosynthesis/export family protein compare
ABZR86_RS06630 -1.6 -3.4 phosphopyruvate hydratase compare
ABZR86_RS13265 -1.6 -4.0 50S ribosomal protein L33 compare
ABZR86_RS01150 -1.5 -1.2 hypothetical protein compare
ABZR86_RS08755 -1.5 -3.8 membrane protein insertion efficiency factor YidD compare
ABZR86_RS02215 -1.5 -2.8 FHA domain-containing protein compare
ABZR86_RS15655 -1.5 -8.9 MFS transporter compare
ABZR86_RS14100 -1.5 -4.4 DNA adenine methylase compare
ABZR86_RS16045 -1.5 -3.9 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS09125 -1.5 -6.0 paraquat-inducible protein A compare
ABZR86_RS03445 -1.4 -3.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS19520 -1.4 -1.8 (2Fe-2S)-binding protein compare
ABZR86_RS07160 -1.4 -4.4 signal peptidase I compare
ABZR86_RS12780 -1.4 -3.9 pteridine reductase compare
ABZR86_RS18490 -1.4 -3.0 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS07665 -1.4 -2.8 exodeoxyribonuclease V subunit beta compare
ABZR86_RS12790 -1.4 -2.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS21485 -1.3 -8.0 GNAT family N-acetyltransferase compare
ABZR86_RS08355 -1.3 -3.8 FtsH protease activity modulator HflK compare
ABZR86_RS13855 -1.3 -8.4 AMP-binding protein compare
ABZR86_RS13385 -1.3 -5.7 lipid-binding SYLF domain-containing protein compare
ABZR86_RS18545 -1.3 -5.8 hypothetical protein compare
ABZR86_RS05540 -1.3 -5.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS14785 -1.3 -1.1 hypothetical protein compare
ABZR86_RS19225 -1.3 -2.1 site-specific tyrosine recombinase XerD compare
ABZR86_RS14700 -1.3 -3.1 glucose-6-phosphate dehydrogenase compare
ABZR86_RS09860 -1.3 -4.5 ClpXP protease specificity-enhancing factor compare
ABZR86_RS17485 -1.3 -7.1 septal ring lytic transglycosylase RlpA family protein compare
ABZR86_RS18100 -1.3 -3.7 hypothetical protein compare
ABZR86_RS05545 -1.3 -5.9 glycosyltransferase family 4 protein compare
ABZR86_RS04495 -1.2 -0.9 hypothetical protein compare
ABZR86_RS07820 -1.2 -1.1 Spy/CpxP family protein refolding chaperone compare
ABZR86_RS01095 -1.2 -7.0 elongation factor G compare
ABZR86_RS17195 -1.2 -5.6 DUF535 family protein compare
ABZR86_RS00710 -1.2 -8.1 polyphosphate kinase 1 compare
ABZR86_RS15335 -1.2 -5.2 lysophospholipid acyltransferase family protein compare
ABZR86_RS02505 -1.2 -2.2 hypothetical protein compare
ABZR86_RS04645 -1.2 -3.3 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS19735 -1.2 -1.0 NAD-dependent epimerase/dehydratase family protein compare
ABZR86_RS21355 -1.2 -2.5 septum site-determining protein MinD compare
ABZR86_RS12060 -1.2 -1.5 HAD family hydrolase compare
ABZR86_RS07445 -1.2 -2.3 class I SAM-dependent methyltransferase compare
ABZR86_RS11620 -1.2 -5.1 30S ribosomal protein S6--L-glutamate ligase compare
ABZR86_RS13940 -1.2 -2.4 D-aminoacyl-tRNA deacylase compare
ABZR86_RS08135 -1.2 -1.1 hypothetical protein compare
ABZR86_RS20540 -1.1 -5.5 3-oxoacyl-ACP reductase FabG conserved
ABZR86_RS00640 -1.1 -2.7 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS18045 -1.1 -1.5 response regulator transcription factor compare
ABZR86_RS06780 -1.1 -1.8 CvpA family protein compare
ABZR86_RS10945 -1.1 -2.4 trehalose-phosphatase compare
ABZR86_RS10020 -1.1 -4.6 CDP-glucose 4,6-dehydratase compare
ABZR86_RS11280 -1.1 -4.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR86_RS22035 -1.1 -1.2 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
ABZR86_RS16760 -1.1 -1.1 phage tail terminator-like protein compare
ABZR86_RS02730 -1.1 -7.0 CPBP family intramembrane glutamic endopeptidase compare
ABZR86_RS11655 -1.1 -4.0 SLC13 family permease compare
ABZR86_RS19860 -1.1 -5.4 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS20335 -1.1 -1.7 histidine kinase compare
ABZR86_RS09720 -1.1 -1.7 flagellar basal body rod protein FlgC compare
ABZR86_RS03910 -1.1 -2.7 VOC family protein compare
ABZR86_RS14610 -1.1 -0.9 conjugal transfer protein TrbN compare


Specific Phenotypes

For 29 genes in this experiment

For stress Fusidic acid sodium salt in Dyella japonica UNC79MFTsu3.2

For stress Fusidic acid sodium salt across organisms