Experiment set3IT065 for Caulobacter crescentus NA1000

Compare to:

PYE with Chloramphenicol 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01712 +2.9 24.0 CopY/TcrY family transcriptional repressor compare
CCNA_03030 +2.8 18.2 cytochrome c2 compare
CCNA_01059 +2.7 24.2 S-layer protein rsaA compare
CCNA_00699 +2.5 15.5 LSU ribosomal protein L28P compare
CCNA_01058 +2.5 14.7 helix-turn-helix transcriptional regulator compare
CCNA_03043 +2.4 8.2 type IV pilin protein pilA compare
CCNA_03064 +2.4 14.6 PadR-family transcriptional regulator compare
CCNA_02328 +2.4 1.8 cell cycle regulatory protein GcrA compare
CCNA_01060 +2.3 13.3 type I protein secretion ATP-binding protein RsaD compare
CCNA_02941 +2.3 8.1 transcription elongation factor greA compare
CCNA_02957 +2.3 11.2 ArsR-family transcriptional regulator compare
CCNA_01979 +2.3 15.1 LexA repressor compare
CCNA_02030 +2.2 8.5 hypothetical protein compare
CCNA_02103 +2.2 15.3 hypothetical protein compare
CCNA_01526 +2.2 8.0 flagellar biosynthesis regulatory protein flaF compare
CCNA_03252 +2.2 14.7 CopY/TcrY-family transcriptional regulator compare
CCNA_02980 +2.2 14.8 tryptophan 2,3-dioxygenase compare
CCNA_00161 +2.2 18.0 hypothetical protein compare
CCNA_02732 +2.1 7.6 hypothetical protein compare
CCNA_01061 +2.1 9.3 type I secretion adaptor protein RsaE compare
CCNA_00518 +2.1 12.2 LSU ribosomal protein L25P compare
CCNA_03519 +2.1 14.9 PadR-family transcriptional regulator compare
CCNA_01964 +2.1 6.5 NADH dehydrogenase compare
CCNA_02315 +2.1 5.7 Cro/CI-family transcriptional regulator compare
CCNA_01722 +2.1 7.2 hypothetical protein compare
CCNA_03281 +2.1 17.5 AsnC-family transcriptional regulator compare
CCNA_02133 +2.1 13.3 glucokinase compare
CCNA_02289 +2.1 16.3 MarR/EmrR family transcriptional regulator compare
CCNA_02026 +2.0 12.2 hypothetical protein compare
CCNA_03289 +2.0 17.2 HicB-family RNA-binding protein compare
CCNA_01959 +2.0 4.3 3-dehydroquinate dehydratase compare
CCNA_R0037 +2.0 10.6 tRNA-Glu compare
CCNA_01814 +2.0 15.5 nitrogen regulation protein ntrB compare
CCNA_01790 +2.0 8.6 protein translocase subunit secG compare
CCNA_01801 +2.0 12.4 hypothetical protein compare
CCNA_03287 +2.0 12.5 PadR-family transcriptional regulator compare
CCNA_00962 +2.0 10.4 MarR-family transcriptional regulator compare
CCNA_01525 +2.0 10.4 flagellar biosynthesis repressor flbT compare
CCNA_00939 +2.0 7.9 MarR-family transcriptional regulator compare
CCNA_01242 +2.0 14.5 amino acid permease compare
CCNA_00162 +2.0 11.8 hypothetical protein compare
CCNA_01840 +2.0 15.8 MerR-family transcriptional regulator compare
CCNA_01094 +1.9 4.5 hypothetical protein compare
CCNA_02387 +1.9 15.9 glutathione reductase compare
CCNA_01361 +1.9 5.0 PepSY superfamily protein compare
CCNA_01751 +1.9 8.2 aminodeoxychorismate lyase compare
CCNA_03012 +1.9 10.8 peroxiredoxin compare
CCNA_01573 +1.9 10.0 ArsR-family transcriptional regulator compare
CCNA_01931 +1.9 11.6 TetR-family transcriptional regulator compare
CCNA_02316 +1.9 11.6 hypothetical protein compare
CCNA_02025 +1.9 5.5 hypothetical protein compare
CCNA_01684 +1.9 10.5 phenylalanine-4-hydroxylase compare
CCNA_01851 +1.9 15.2 quinol cytochrome oxidase polypeptide II compare
CCNA_02910 +1.9 15.0 TonB-dependent receptor compare
CCNA_02591 +1.8 11.4 glutaredoxin compare
CCNA_03643 +1.8 3.0 succinate dehydrogenase membrane anchor subunit compare
CCNA_02448 +1.8 11.2 hypothetical protein compare
CCNA_03271 +1.8 12.4 methionine gamma-lyase compare
CCNA_00852 +1.8 4.3 TetR family transcriptional regulator compare
CCNA_00924 +1.8 14.1 MarR/EmrR family transcriptional regulator compare
CCNA_03989 +1.8 14.3 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01942 +1.8 10.0 Rrf2 family protein compare
CCNA_02836 +1.8 9.5 hypothetical protein compare
CCNA_01690 +1.8 6.7 MAPEG family membrane protein compare
CCNA_03961 +1.8 9.0 hypothetical protein compare
CCNA_00954 +1.8 13.2 AAA-family response regulator flbD compare
CCNA_02225 +1.8 9.7 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02042 +1.8 12.4 trigger factor chaperone compare
CCNA_00756 +1.8 4.8 hypothetical protein compare
CCNA_03280 +1.8 15.4 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_03612 +1.7 10.8 HTH XRE-family transcriptional regulator compare
CCNA_03938 +1.7 6.0 hypothetical protein compare
CCNA_00769 +1.7 9.3 TetR family transcriptional regulator compare
CCNA_01453 +1.7 5.9 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00846 +1.7 15.0 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03951 +1.7 7.7 hypothetical protein compare
CCNA_03805 +1.7 13.5 PadR-family transcriptional regulator compare
CCNA_00944 +1.7 8.9 flagellar hook length determination protein compare
CCNA_02447 +1.7 10.2 PspA/IM30 family regulatory protein compare
CCNA_01848 +1.7 11.9 quinol cytochrome oxidase polypeptide IV compare
CCNA_00505 +1.7 7.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02028 +1.7 3.4 NTF2 superfamily protein compare
CCNA_02644 +1.7 5.3 cell division protein FtsL compare
CCNA_03479 +1.7 9.9 MarR-family transcriptional regulator compare
CCNA_03123 +1.7 10.4 ArsR-family transcriptional regulator compare
CCNA_00521 +1.7 3.5 antitoxin protein compare
CCNA_00043 +1.7 7.5 N utilization substance protein A NusA compare
CCNA_03858 +1.7 13.4 protein translocase subunit secB compare
CCNA_02180 +1.7 3.3 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_01655 +1.7 10.3 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00999 +1.7 6.7 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_02617 +1.7 12.9 histidinol-phosphate aminotransferase compare
CCNA_01739 +1.7 8.8 LSU ribosomal protein L9P compare
CCNA_00920 +1.7 7.1 hypothetical protein compare
CCNA_02000 +1.7 3.7 SSU ribosomal protein S2P compare
CCNA_01186 +1.7 6.7 hypothetical protein compare
CCNA_03936 +1.7 6.3 hypothetical protein compare
CCNA_00684 +1.6 10.3 anti-sigma factor, ChrR-family compare
CCNA_01815 +1.6 11.2 nitrogen assimilation regulatory protein NtrC compare
CCNA_01913 +1.6 11.6 MarR-family transcriptional regulator compare
CCNA_02575 +1.6 4.2 hypothetical protein compare
CCNA_01968 +1.6 4.4 pentapeptide repeats containing protein compare
CCNA_03325 +1.6 7.0 hypothetical protein compare
CCNA_02339 +1.6 10.2 methyltransferase compare
CCNA_00027 +1.6 2.5 2OG-Fe(II) oxygenase compare
CCNA_01008 +1.6 12.0 urocanate hydratase compare
CCNA_00028 +1.6 7.9 TonB-dependent receptor compare
CCNA_02419 +1.6 5.0 TonB1 protein compare
CCNA_03129 +1.6 10.8 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03464 +1.6 5.7 glycine cleavage system H protein compare
CCNA_00947 +1.6 12.1 flagellar hook protein FlgE compare
CCNA_01804 +1.6 10.7 glutathione peroxidase compare
CCNA_01742 +1.6 7.0 hypothetical protein compare
CCNA_01393 +1.6 11.6 soluble lytic murein transglycosylase compare
CCNA_02616 +1.5 10.2 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02534 +1.5 3.8 hypothetical protein compare
CCNA_02619 +1.5 11.7 stomatin/prohibitin-related protein compare
CCNA_03062 +1.5 9.5 cell wall hydrolase family protein compare
CCNA_03420 +1.5 8.7 hypothetical protein compare
CCNA_03089 +1.5 9.1 hypothetical protein compare
CCNA_01850 +1.5 12.3 quinol cytochrome oxidase polypeptide I compare
CCNA_03498 +1.5 10.0 MarR-family transcriptional regulator compare
CCNA_03379 +1.5 2.8 Cro/CI family transcriptional regulator compare
CCNA_02646 +1.5 3.4 cell division protein MraZ compare
CCNA_03689 +1.5 10.8 alanine dehydrogenase compare
CCNA_02576 +1.5 10.7 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01802 +1.5 4.1 hypothetical protein compare
CCNA_00998 +1.5 7.2 ROS/MUCR transcriptional regulator compare
CCNA_03959 +1.5 1.3 hypothetical protein compare
CCNA_01681 +1.5 6.7 RimI-like acetyltransferase compare
CCNA_01295 +1.5 10.8 integral membrane protein compare
CCNA_01679 +1.5 8.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_00375 +1.5 5.2 hypothetical protein compare
CCNA_00032 +1.5 5.0 antitoxin protein VapB compare
CCNA_03518 +1.5 10.8 cytochrome c oxidase polypeptide II coxB compare
CCNA_00163 +1.5 9.2 exopolysaccharide transport family protein compare
CCNA_00354 +1.5 8.5 NlpC/P60 CHAP domain amidase protein compare
CCNA_00803 +1.5 6.0 chemotaxis protein cheW compare
CCNA_03401 +1.5 6.9 conserved hypothetical cytosolic protein compare
CCNA_01578 +1.5 9.5 beta-lactamase repressor compare
CCNA_02416 +1.4 7.4 DNA-binding protein HU compare
CCNA_01849 +1.4 8.7 quinol cytochrome oxidase polypeptide III compare
CCNA_01678 +1.4 8.4 arginine N-succinyltransferase, beta chain compare
CCNA_03513 +1.4 9.0 cytochrome c oxidase subunit III coxC compare
CCNA_00507 +1.4 6.8 cytochrome c1 compare
CCNA_00781 +1.4 10.4 two-component receiver protein CpdR compare
CCNA_00527 +1.4 7.9 hypothetical protein compare
CCNA_01181 +1.4 9.3 hypothetical protein compare
CCNA_00726 +1.4 10.6 acyl-CoA dehydrogenase compare
CCNA_02242 +1.4 8.4 PHB granule-associated protein, phasin2 compare
CCNA_02021 +1.4 5.6 hypothetical protein compare
CCNA_00459 +1.4 9.7 Na+/H+ antiporter nhaA compare
CCNA_00441 +1.4 7.6 chemotaxis receiver domain protein cheYI compare
CCNA_01541 +1.4 9.0 LysR-family transcriptional regulator compare
CCNA_02135 +1.4 7.9 6-phosphogluconolactonase compare
CCNA_01235 +1.4 7.9 AcrR-family transcriptional regulator compare
CCNA_00834 +1.4 7.0 flagellin FljM compare
CCNA_01420 +1.4 9.4 NrdR family transcriptional regulator compare
CCNA_03964 +1.4 2.9 hypothetical protein compare
CCNA_00945 +1.4 8.0 chemotaxis protein MotD compare
CCNA_02127 +1.4 9.7 oxacillin resistance-associated protein fmtC compare
CCNA_01780 +1.4 10.3 exopolyphosphatase compare
CCNA_01528 +1.4 8.7 flagellin fljK compare
CCNA_02081 +1.4 5.5 Sec-independent protein translocase protein tatB compare
CCNA_02132 +1.4 5.1 LacI-family transcriptional regulator compare
CCNA_01730 +1.4 8.3 amidophosphoribosyltransferase compare
CCNA_01619 +1.4 9.0 NYN domain protein compare
CCNA_00735 +1.4 2.2 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_02341 +1.4 6.6 small heat shock protein compare
CCNA_03215 +1.4 8.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01763 +1.4 9.6 multifunctional aminopeptidase compare
CCNA_02134 +1.3 9.9 phosphogluconate dehydratase compare
CCNA_02379 +1.3 7.9 hypothetical protein compare
CCNA_03893 +1.3 3.3 hypothetical protein compare
CCNA_00946 +1.3 7.4 Basal-body rod modification protein FlgD compare
CCNA_02330 +1.3 6.2 hypothetical protein compare
CCNA_00950 +1.3 9.9 flagellar M-ring protein FliF compare
CCNA_02037 +1.3 8.2 ATP-dependent endopeptidase Lon compare
CCNA_01057 +1.3 8.8 hypothetical protein compare
CCNA_02942 +1.3 3.4 nucleoside-diphosphate-sugar epimerase compare
CCNA_03214 +1.3 7.5 hypothetical protein compare
CCNA_02805 +1.3 5.1 hypothetical protein compare
CCNA_01063 +1.3 7.5 UDP-perosamine 4-acetyl transferase compare
CCNA_01011 +1.3 6.9 imidazolonepropionase compare
CCNA_01324 +1.3 6.9 LSU ribosomal protein L30P compare
CCNA_01406 +1.3 6.3 metal-dependent hydrolase compare
CCNA_01593 +1.3 7.8 Xaa-pro aminopeptidase compare
CCNA_00895 +1.3 7.1 hypothetical protein compare
CCNA_01006 +1.3 5.6 flagellar hook-basal body complex protein FliE compare
CCNA_00447 +1.3 7.9 chemotaxis protein cheD compare
CCNA_00168 +1.3 9.5 polysaccharide export protein compare
CCNA_00107 +1.3 4.0 Trm112p-like protein compare
CCNA_02467 +1.3 8.8 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_02367 +1.3 8.9 CelR-family transcriptional regulator compare
CCNA_01728 +1.3 6.9 short chain dehydrogenase compare
CCNA_00031 +1.3 7.3 toxin protein VapC compare
CCNA_02475 +1.3 9.3 transcriptional regulator vanR compare
CCNA_02151 +1.3 4.8 exodeoxyribonuclease VII small subunit compare
CCNA_01276 +1.3 2.6 cytochrome c5 compare
CCNA_01025 +1.3 8.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Chloramphenicol across organisms