Experiment set3IT064 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Chloramphenicol 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.8 -5.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2010 -5.0 -3.4 hypothetical protein compare
Pf6N2E2_5527 -3.6 -3.5 Cold shock protein CspC compare
Pf6N2E2_4353 -3.5 -4.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2825 -2.9 -4.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5819 -2.7 -6.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p conserved
Pf6N2E2_5178 -2.7 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3835 -2.7 -4.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3264 -2.6 -2.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2823 -2.6 -5.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5219 -2.6 -7.1 FIG140336: TPR domain protein compare
Pf6N2E2_3257 -2.5 -4.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4075 -2.5 -5.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2824 -2.5 -10.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2827 -2.5 -1.6 hypothetical protein compare
Pf6N2E2_3270 -2.4 -5.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_4187 -2.4 -4.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5845 -2.4 -7.3 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5006 -2.4 -6.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4416 -2.3 -3.4 Tyrosine recombinase XerC compare
Pf6N2E2_4352 -2.3 -4.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5430 -2.2 -7.3 Transglycosylase, Slt family compare
Pf6N2E2_2586 -2.2 -2.6 Hpt domain protein compare
Pf6N2E2_2217 -2.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3607 -2.0 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4607 -2.0 -4.0 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5987 -2.0 -4.5 OmpA family protein compare
Pf6N2E2_621 -1.9 -6.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5534 -1.9 -4.7 FIG000859: hypothetical protein YebC compare
Pf6N2E2_737 -1.9 -2.3 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_4174 -1.9 -9.2 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_5944 -1.9 -5.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4072 -1.8 -4.7 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3258 -1.8 -5.0 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5160 -1.8 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_622 -1.8 -4.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_463 -1.8 -5.0 Transcriptional regulatory protein RstA compare
Pf6N2E2_5794 -1.8 -2.7 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2473 -1.8 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_5340 -1.8 -4.6 Stringent starvation protein A compare
Pf6N2E2_3060 -1.8 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_6057 -1.7 -3.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_6058 -1.7 -5.5 FIG139976: hypothetical protein compare
Pf6N2E2_4453 -1.7 -11.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_3351 -1.7 -4.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3095 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_3666 -1.7 -4.6 InaA protein compare
Pf6N2E2_2973 -1.7 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5406 -1.7 -2.6 FIG00958224: hypothetical protein compare
Pf6N2E2_5986 -1.7 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5780 -1.7 -5.9 Periplasmic protease compare
Pf6N2E2_3568 -1.7 -2.3 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_447 -1.6 -4.9 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_5846 -1.6 -8.5 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2503 -1.6 -2.2 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_624 -1.6 -4.3 hypothetical protein PA3071 compare
Pf6N2E2_4181 -1.6 -1.6 Organic hydroperoxide resistance protein compare
Pf6N2E2_5727 -1.6 -5.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2281 -1.5 -2.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3856 -1.5 -5.1 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_4439 -1.5 -6.3 Glutathione-regulated potassium-efflux system ATP-binding protein conserved
Pf6N2E2_3942 -1.5 -7.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_4155 -1.4 -8.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3833 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_2261 -1.4 -6.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_5181 -1.4 -7.7 Paraquat-inducible protein A compare
Pf6N2E2_2938 -1.3 -3.1 Outer membrane lipoprotein compare
Pf6N2E2_2474 -1.3 -6.8 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_2753 -1.3 -1.6 HtrA protease/chaperone protein compare
Pf6N2E2_2694 -1.3 -5.6 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_5183 -1.3 -7.5 Paraquat-inducible protein B compare
Pf6N2E2_625 -1.3 -4.3 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4886 -1.3 -6.6 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2067 -1.3 -10.6 cis/trans isomerase compare
Pf6N2E2_248 -1.3 -5.8 hypothetical protein compare
Pf6N2E2_4162 -1.3 -2.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3074 -1.3 -1.8 FIG00960973: hypothetical protein compare
Pf6N2E2_5610 -1.3 -4.3 two-component system sensor protein compare
Pf6N2E2_4160 -1.2 -1.3 Cytochrome c5 compare
Pf6N2E2_3770 -1.2 -2.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3637 -1.2 -6.9 yqiA-like hydrolase, affects the cell envelope (from data) compare
Pf6N2E2_2320 -1.2 -3.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2756 -1.2 -5.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1705 -1.2 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2752 -1.2 -4.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_623 -1.2 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_4372 -1.2 -3.8 FIG00460773: hypothetical protein compare
Pf6N2E2_2642 -1.1 -6.4 putative patatin-like phospholipase compare
Pf6N2E2_2471 -1.1 -6.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3039 -1.1 -5.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_928 -1.1 -2.4 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_5015 -1.1 -4.2 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_841 -1.1 -2.7 hypothetical protein compare
Pf6N2E2_4153 -1.1 -1.4 Sensory box histidine kinase compare
Pf6N2E2_3260 -1.1 -3.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2469 -1.1 -3.5 hypothetical protein compare
Pf6N2E2_620 -1.1 -5.1 BatD compare
Pf6N2E2_3062 -1.1 -3.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4150 -1.1 -3.5 probable exported protein YPO0432 compare
Pf6N2E2_2213 -1.1 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_122 -1.0 -1.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_3504 -1.0 -5.5 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_88 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_1824 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_464 -1.0 -1.9 Sensory histidine kinase QseC compare
Pf6N2E2_3561 -1.0 -3.1 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_3461 -1.0 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2477 -1.0 -1.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_2218 -1.0 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5155 -1.0 -2.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1545 -1.0 -3.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_178 -1.0 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5130 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_4982 -1.0 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_2912 -1.0 -1.6 FIG00954094: hypothetical protein compare
Pf6N2E2_2022 -1.0 -4.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4362 -0.9 -2.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1691 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_4797 -0.9 -1.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1875 -0.9 -2.2 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5720 -0.9 -6.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2750 -0.9 -4.8 Putative permease PerM (= YfgO) compare
Pf6N2E2_3588 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4999 -0.9 -2.7 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_451 -0.9 -2.1 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5536 -0.9 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5664 -0.9 -2.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_4417 -0.9 -2.5 Protein of unknown function DUF484 compare
Pf6N2E2_895 -0.9 -3.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_3611 -0.9 -0.9 HflC protein compare
Pf6N2E2_2574 -0.9 -1.6 Flagellar synthesis regulator FleN compare
Pf6N2E2_5633 -0.9 -6.4 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2699 -0.9 -3.6 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_5262 -0.9 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5756 -0.9 -1.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3941 -0.9 -1.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2935 -0.9 -5.5 NAD(FAD)-utilizing dehydrogenase, sll0175 homolog compare
Pf6N2E2_5961 -0.9 -3.8 Transcriptional regulator, TetR family compare
Pf6N2E2_4147 -0.8 -5.0 Fused spore maturation proteins A and B compare
Pf6N2E2_1055 -0.8 -4.8 Transcriptional regulator MexT compare
Pf6N2E2_3613 -0.8 -4.2 GTP-binding protein HflX compare
Pf6N2E2_1083 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_2606 -0.8 -4.1 hypothetical protein compare
Pf6N2E2_3516 -0.8 -1.8 Probable transmembrane protein compare
Pf6N2E2_1124 -0.8 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2971 -0.8 -6.6 AmpG permease compare
Pf6N2E2_4541 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2552 -0.8 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1661 -0.8 -3.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5316 -0.8 -0.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3844 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_1305 -0.8 -2.5 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_3855 -0.8 -3.7 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
Pf6N2E2_5593 -0.8 -2.8 Leucyl-tRNA synthetase compare
Pf6N2E2_5816 -0.8 -1.0 Smr domain protein compare
Pf6N2E2_4074 -0.8 -4.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5028 -0.8 -2.8 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) compare
Pf6N2E2_180 -0.8 -2.6 Transcriptional regulator, MerR family compare
Pf6N2E2_4494 -0.8 -2.5 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_613 -0.8 -1.0 lipoprotein, putative compare
Pf6N2E2_1156 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_754 -0.7 -1.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3460 -0.7 -1.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5182 -0.7 -3.5 Paraquat-inducible protein A compare
Pf6N2E2_5320 -0.7 -3.3 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3144 -0.7 -3.6 Thiol:disulfide interchange protein DsbC compare
Pf6N2E2_5571 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_5544 -0.7 -3.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5076 -0.7 -3.1 DNA repair protein RadA compare
Pf6N2E2_2073 -0.7 -3.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1014 -0.7 -1.4 Nitrate/nitrite transporter compare
Pf6N2E2_953 -0.7 -1.5 FIG00958851: hypothetical protein compare
Pf6N2E2_4369 -0.7 -1.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3346 -0.7 -2.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2536 -0.7 -0.9 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4955 -0.7 -2.3 acetyltransferase, GNAT family compare
Pf6N2E2_695 -0.7 -2.6 Nitrite reductase associated c-type cytochorome NirN compare
Pf6N2E2_460 -0.7 -1.4 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_1446 -0.7 -2.5 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_2487 -0.7 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_1089 -0.7 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1817 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_5156 -0.7 -1.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6038 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_3305 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_2452 -0.7 -3.5 Spermidine synthase (EC 2.5.1.16) compare
Pf6N2E2_855 -0.7 -0.8 Transcriptional regulator, IclR family compare
Pf6N2E2_1493 -0.7 -2.5 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1932 -0.7 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_1782 -0.7 -1.8 STAS domain protein compare
Pf6N2E2_533 -0.6 -1.6 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_133 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3493 -0.6 -2.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3344 -0.6 -1.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_2317 -0.6 -2.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5321 -0.6 -3.6 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2857 -0.6 -2.0 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_712 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_2397 -0.6 -1.8 Two-component system response regulator QseB compare
Pf6N2E2_81 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Chloramphenicol in Pseudomonas fluorescens FW300-N2E2

For stress Chloramphenicol across organisms