Experiment set3IT064 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Benzethonium chloride 0.025 mM

200 most important genes:

  gene name fitness t score description  
AO353_05625 -4.2 -2.9 transcription elongation factor GreA compare
AO353_06415 -3.5 -4.7 hypothetical protein compare
AO353_04565 -3.4 -4.6 nucleoid-associated protein compare
AO353_00330 -3.4 -8.1 hypothetical protein compare
AO353_06040 -3.3 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_05135 -3.2 -9.0 toluene tolerance protein compare
AO353_06585 -3.1 -6.8 hypothetical protein compare
AO353_05145 -3.0 -5.8 ABC transporter permease compare
AO353_12940 -3.0 -9.7 glycosyl transferase compare
AO353_03580 -3.0 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_05150 -2.9 -4.4 ABC transporter ATP-binding protein compare
AO353_17295 -2.9 -17.8 multidrug transporter compare
AO353_17290 -2.8 -6.7 multidrug transporter compare
AO353_14370 -2.8 -7.8 glucose-6-phosphate isomerase compare
AO353_12950 -2.8 -10.1 polymerase compare
AO353_17300 -2.8 -8.1 antibiotic transporter compare
AO353_05140 -2.7 -8.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_12500 -2.6 -2.5 shikimate kinase compare
AO353_00495 -2.6 -3.0 DNA topoisomerase I compare
AO353_12935 -2.5 -4.4 glycosyltransferase compare
AO353_07140 -2.4 -15.6 peptidase M23 compare
AO353_14775 -2.4 -6.2 hypothetical protein compare
AO353_22685 -2.4 -3.9 peroxidase compare
AO353_07355 -2.3 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_23730 -2.3 -3.7 hypothetical protein compare
AO353_05130 -2.3 -2.2 anti-anti-sigma factor compare
AO353_12115 -2.2 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12105 -2.2 -5.6 peptidase S41 compare
AO353_15905 -2.2 -7.4 outer membrane protein assembly factor BamB compare
AO353_09060 -2.2 -2.9 hypothetical protein compare
AO353_16745 -2.2 -2.9 ArsR family transcriptional regulator compare
AO353_28110 -2.2 -5.6 TetR family transcriptional regulator compare
AO353_02690 -2.2 -10.5 dehydrogenase compare
AO353_06495 -2.1 -6.0 gamma-glutamyl phosphate reductase compare
AO353_25990 -2.1 -7.0 aspartyl beta-hydroxylase compare
AO353_08880 -2.0 -3.3 exopolyphosphatase compare
AO353_20170 -2.0 -4.9 trigger factor compare
AO353_13100 -2.0 -2.3 GTPase RsgA compare
AO353_04035 -2.0 -4.8 exclusion suppressor FxsA compare
AO353_09240 -2.0 -3.4 acetylglutamate kinase compare
AO353_00835 -1.9 -6.7 transporter compare
AO353_25550 -1.9 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
AO353_04490 -1.9 -9.4 murein transglycosylase compare
AO353_05225 -1.9 -13.8 hypothetical protein compare
AO353_06045 -1.8 -6.5 exodeoxyribonuclease V subunit beta compare
AO353_08165 -1.8 -3.0 pyrroline-5-carboxylate reductase compare
AO353_09320 -1.8 -8.5 ATP-dependent DNA helicase RecG compare
AO353_15170 -1.8 -3.6 cytochrome D ubiquinol oxidase subunit III compare
AO353_17645 -1.8 -9.5 peptidase M48 compare
AO353_08350 -1.8 -7.5 hypothetical protein compare
AO353_07155 -1.8 -6.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_20185 -1.7 -5.8 DNA-binding protein compare
AO353_02710 -1.7 -8.8 (p)ppGpp synthetase compare
AO353_05840 -1.7 -11.0 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_03710 -1.7 -3.0 formyltetrahydrofolate deformylase compare
AO353_16805 -1.7 -5.7 recombinase RecA compare
AO353_11165 -1.7 -8.4 hypothetical protein compare
AO353_10780 -1.7 -1.6 DNA-binding protein compare
AO353_08685 -1.7 -6.9 N-acetylglutamate synthase compare
AO353_06050 -1.7 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_15490 -1.6 -2.7 hypothetical protein compare
AO353_06455 -1.6 -2.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_12930 -1.6 -3.6 GlcNAc-PI de-N-acetylase compare
AO353_02250 -1.6 -3.5 chorismate synthase compare
AO353_09720 -1.6 -2.3 hypothetical protein compare
AO353_04220 -1.5 -5.7 chemotaxis protein CheY compare
AO353_02000 -1.5 -3.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_17640 -1.5 -2.4 serine peptidase compare
AO353_03615 -1.5 -2.9 cold-shock protein compare
AO353_08265 -1.5 -5.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03590 -1.5 -3.1 crossover junction endodeoxyribonuclease RuvC compare
AO353_11770 -1.5 -2.0 molecular chaperone Hsp33 compare
AO353_23710 -1.5 -4.7 protein BatD compare
AO353_22800 -1.5 -2.3 sulfite reductase compare
AO353_13140 -1.5 -4.9 tRNA dimethylallyltransferase compare
AO353_19360 -1.4 -2.5 peroxiredoxin compare
AO353_03360 -1.4 -6.4 glucose-6-phosphate dehydrogenase compare
AO353_02815 -1.4 -4.2 transcriptional regulator compare
AO353_09900 -1.4 -8.6 phosphate ABC transporter permease compare
AO353_10455 -1.4 -2.1 tRNA modification GTPase MnmE compare
AO353_03515 -1.4 -2.2 cold-shock protein compare
AO353_02660 -1.4 -4.6 peptidase P60 compare
AO353_23495 -1.4 -2.7 SAM-dependent methyltransferase compare
AO353_17625 -1.3 -7.1 RNA polymerase subunit sigma compare
AO353_15185 -1.3 -4.1 ATPase compare
AO353_13925 -1.3 -2.1 XRE family transcriptional regulator compare
AO353_14550 -1.3 -9.1 paraquat-inducible protein A conserved
AO353_12460 -1.3 -6.1 malate dehydrogenase compare
AO353_12420 -1.3 -3.1 predicted FeS cluster maintenance protein (from data) compare
AO353_00310 -1.3 -6.6 transaldolase compare
AO353_00825 -1.3 -3.0 porin compare
AO353_12090 -1.3 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO353_03585 -1.3 -1.9 ATP-dependent DNA helicase RuvA compare
AO353_14420 -1.3 -3.3 molecular chaperone DnaK compare
AO353_14115 -1.3 -5.5 gamma-glutamyl kinase compare
AO353_10945 -1.3 -2.9 cytochrome C compare
AO353_22920 -1.3 -4.1 GntR family transcriptional regulator compare
AO353_02070 -1.3 -5.4 prephenate dehydratase compare
AO353_22195 -1.3 -2.4 metal ABC transporter permease compare
AO353_16495 -1.3 -4.6 zinc metallopeptidase RseP compare
AO353_27710 -1.3 -1.7 DNA repair protein compare
AO353_02015 -1.2 -5.1 acetyltransferase compare
AO353_14560 -1.2 -9.4 mammalian cell entry protein conserved
AO353_22820 -1.2 -9.0 NAD-glutamate dehydrogenase compare
AO353_01975 -1.2 -5.4 glycosyl transferase compare
AO353_20660 -1.2 -3.2 pseudouridine synthase compare
AO353_23715 -1.2 -5.2 hypothetical protein compare
AO353_13160 -1.2 -2.4 membrane protease HflC compare
AO353_13155 -1.2 -3.6 hypothetical protein compare
AO353_08775 -1.2 -1.5 cell division protein ZapA compare
AO353_23735 -1.2 -5.4 AAA family ATPase compare
AO353_02940 -1.2 -2.3 DNA-binding protein compare
AO353_18780 -1.2 -5.2 cobyrinic acid a,c-diamide synthase compare
AO353_18700 -1.2 -2.7 flagellar biogenesis protein compare
AO353_27650 -1.2 -3.3 cell division protein FtsK compare
AO353_23725 -1.2 -3.7 hypothetical protein compare
AO353_19295 -1.2 -1.7 hypothetical protein compare
AO353_18715 -1.2 -1.8 histidine kinase compare
AO353_12690 -1.2 -1.0 acyl carrier protein compare
AO353_10985 -1.1 -2.8 hypothetical protein compare
AO353_17975 -1.1 -4.4 arabinose ABC transporter permease compare
AO353_17175 -1.1 -2.7 beta-ketoadipyl CoA thiolase compare
AO353_19015 -1.1 -7.0 hypothetical protein compare
AO353_14555 -1.1 -7.9 paraquat-inducible protein A conserved
AO353_09890 -1.1 -3.4 phosphate ABC transporter ATP-binding protein compare
AO353_23720 -1.1 -2.8 BatB protein compare
AO353_25505 -1.1 -5.6 4-amino-4-deoxy-L-arabinose transferase compare
AO353_15830 -1.1 -2.8 transcriptional regulator compare
AO353_09315 -1.1 -6.5 LysR family transcriptional regulator compare
AO353_03100 -1.1 -2.0 XRE family transcriptional regulator compare
AO353_02010 -1.1 -4.1 glycosyl transferase family 1 compare
AO353_00660 -1.1 -2.4 transcriptional regulator compare
AO353_21465 -1.1 -2.1 cation:proton antiporter compare
AO353_07925 -1.1 -5.8 beta-hydroxylase compare
AO353_19605 -1.1 -2.1 hypothetical protein compare
AO353_10055 -1.0 -6.8 DNA helicase II compare
AO353_09875 -1.0 -1.3 hypothetical protein compare
AO353_19020 -1.0 -2.4 hypothetical protein compare
AO353_17850 -1.0 -2.4 SAM-dependent methyltransferase compare
AO353_26835 -1.0 -2.7 transcriptional regulator compare
AO353_12880 -1.0 -1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_14585 -1.0 -3.7 ribosomal-protein-alanine acetyltransferase compare
AO353_11480 -1.0 -3.7 hypothetical protein compare
AO353_03545 -1.0 -5.1 hypothetical protein compare
AO353_11060 -1.0 -3.4 holliday junction resolvasome, helicase subunit compare
AO353_25530 -1.0 -3.7 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_11485 -1.0 -3.1 hypothetical protein compare
AO353_10430 -1.0 -2.7 chromosome partitioning protein ParB compare
AO353_02440 -1.0 -6.5 peptidase S41 compare
AO353_05690 -1.0 -2.4 SsrA-binding protein compare
AO353_11730 -1.0 -5.4 glutamate--cysteine ligase compare
AO353_01990 -1.0 -4.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_26045 -1.0 -1.9 hypothetical protein compare
AO353_25015 -1.0 -2.7 polyketide cyclase compare
AO353_15785 -1.0 -4.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_02570 -1.0 -2.0 hypothetical protein compare
AO353_00355 -1.0 -2.1 transcriptional regulator compare
AO353_02005 -1.0 -1.3 hypothetical protein compare
AO353_09000 -0.9 -3.5 argininosuccinate lyase compare
AO353_02945 -0.9 -4.1 magnesium transporter compare
AO353_17855 -0.9 -2.0 ribonuclease D compare
AO353_24415 -0.9 -1.9 glutamine ABC transporter ATP-binding protein compare
AO353_14475 -0.9 -7.3 penicillin-binding protein 1B compare
AO353_00820 -0.9 -4.2 uroporphyrin-III methyltransferase compare
AO353_13640 -0.9 -2.8 histidine kinase compare
AO353_20840 -0.9 -1.4 ribose pyranase compare
AO353_09250 -0.9 -2.2 exodeoxyribonuclease III compare
AO353_04650 -0.9 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
AO353_21445 -0.9 -2.3 cation:proton antiporter compare
AO353_15730 -0.9 -2.2 hypothetical protein compare
AO353_07235 -0.9 -4.7 phosphoglycolate phosphatase compare
AO353_08600 -0.9 -2.4 TetR family transcriptional regulator compare
AO353_18285 -0.9 -1.9 3-phosphoglycerate kinase compare
AO353_12110 -0.8 -4.6 peptidase M23 compare
AO353_12915 -0.8 -4.2 carbamoyltransferase compare
AO353_21300 -0.8 -3.3 glycolate oxidase iron-sulfur subunit compare
AO353_09235 -0.8 -3.9 phosphoglucomutase compare
AO353_09260 -0.8 -3.8 ribonuclease PH compare
AO353_23155 -0.8 -2.4 IclR family transcriptional regulator compare
AO353_20865 -0.8 -1.3 cold-shock protein compare
AO353_10930 -0.8 -4.4 DNA polymerase I compare
AO353_13395 -0.8 -1.6 protein hupE compare
AO353_00430 -0.8 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_04190 -0.8 -1.6 glycerol-3-phosphate dehydrogenase compare
AO353_03795 -0.8 -2.7 fumarate hydratase compare
AO353_07315 -0.8 -1.6 rRNA methyltransferase compare
AO353_18170 -0.8 -4.0 aspartyl beta-hydroxylase compare
AO353_15555 -0.8 -2.8 fumarylacetoacetase compare
AO353_28035 -0.8 -3.3 hypothetical protein compare
AO353_25570 -0.8 -4.5 glycosyltransferase compare
AO353_09030 -0.8 -1.2 iron donor protein CyaY compare
AO353_13415 -0.8 -3.3 TetR family transcriptional regulator compare
AO353_09115 -0.8 -3.2 diguanylate cyclase compare
AO353_01410 -0.8 -2.2 ribonuclease E compare
AO353_22305 -0.8 -1.6 LysR family transcriptional regulator compare
AO353_08620 -0.7 -1.5 hypothetical protein compare
AO353_01355 -0.7 -3.7 3-oxoacyl-ACP synthase compare
AO353_21520 -0.7 -2.3 hypothetical protein compare
AO353_14975 -0.7 -2.8 hypothetical protein compare
AO353_26195 -0.7 -1.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Benzethonium chloride in Pseudomonas fluorescens FW300-N2E3

For stress Benzethonium chloride across organisms