Experiment set3IT064 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Benzethonium chloride 0.025 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_17750 +2.8 9.2 transcriptional regulator compare
AO353_17305 +2.7 11.5 TetR family transcriptional regulator compare
AO353_07805 +1.9 11.7 betaine-aldehyde dehydrogenase compare
AO353_26840 +1.4 6.3 RND transporter compare
AO353_18435 +1.3 7.0 MarR family transcriptional regulator compare
AO353_26830 +1.3 5.7 histidine kinase compare
AO353_08465 +1.3 11.4 phosphoenolpyruvate-protein phosphotransferase compare
AO353_09560 +1.3 3.5 type VI secretion protein compare
AO353_09040 +1.2 2.5 diaminopimelate epimerase compare
AO353_16530 +1.2 1.7 ribonuclease HII compare
AO353_23835 +1.1 4.1 hypothetical protein compare
AO353_00105 +1.1 2.6 hypothetical protein compare
AO353_07800 +1.1 5.2 transcriptional repressor BetI compare
AO353_13420 +1.1 2.9 hypothetical protein compare
AO353_18540 +1.0 3.1 pseudouridine synthase compare
AO353_05280 +1.0 2.3 4-carboxymuconolactone decarboxylase compare
AO353_27720 +1.0 5.1 cupin compare
AO353_07645 +1.0 2.0 sarcosine oxidase subunit gamma compare
AO353_26845 +1.0 6.7 acriflavine resistance protein B compare
AO353_07810 +0.9 7.9 choline dehydrogenase compare
AO353_04325 +0.9 2.6 hypothetical protein compare
AO353_04930 +0.9 2.3 flavodoxin compare
AO353_10445 +0.8 1.7 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_23945 +0.8 2.1 hypothetical protein compare
AO353_01480 +0.8 5.2 hypothetical protein compare
AO353_08130 +0.8 2.4 uracil phosphoribosyltransferase compare
AO353_21100 +0.8 2.3 DNA-binding protein compare
AO353_01725 +0.8 2.2 phosphohistidine phosphatase compare
AO353_11195 +0.7 6.2 hemolysin secretion protein D compare
AO353_14150 +0.7 1.7 peptidylprolyl isomerase compare
AO353_03115 +0.7 1.8 TetR family transcriptional regulator compare
AO353_11185 +0.7 5.8 channel protein TolC compare
AO353_00955 +0.7 2.4 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_22360 +0.7 1.9 ABC transporter ATP-binding protein compare
AO353_29025 +0.7 3.3 LysR family transcriptional regulator compare
AO353_15260 +0.7 3.2 stringent starvation protein A compare
AO353_20815 +0.7 2.4 LacI family transcriptional regulator compare
AO353_25220 +0.7 2.3 hypothetical protein compare
AO353_03635 +0.7 3.4 mechanosensitive ion channel protein MscS compare
AO353_08470 +0.7 2.6 RNA pyrophosphohydrolase compare
AO353_04055 +0.7 1.7 methionine--tRNA ligase compare
AO353_02040 +0.7 1.9 integration host factor subunit beta compare
AO353_06355 +0.7 1.9 thiamine-phosphate pyrophosphorylase compare
AO353_08245 +0.6 2.4 cell division ATP-binding protein FtsE compare
AO353_23220 +0.6 1.8 hypothetical protein compare
AO353_25585 +0.6 1.5 argininosuccinate lyase compare
AO353_01485 +0.6 3.5 ABC transporter compare
AO353_22150 +0.6 2.0 iron transporter compare
AO353_02300 +0.6 1.9 MarR family transcriptional regulator compare
AO353_27220 +0.6 2.6 hypothetical protein compare
AO353_24260 +0.6 0.9 hypothetical protein compare
AO353_26645 +0.6 2.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_09055 +0.6 3.3 HAD family hydrolase compare
AO353_06710 +0.6 1.0 riboflavin synthase subunit alpha compare
AO353_03135 +0.6 2.5 hypothetical protein compare
AO353_12540 +0.6 2.1 hypothetical protein compare
AO353_11305 +0.6 2.2 adenylylsulfate kinase compare
AO353_24400 +0.6 2.4 ACP phosphodiesterase compare
AO353_21750 +0.6 1.7 peptidylprolyl isomerase compare
AO353_17410 +0.6 0.9 arylsulfate sulfotransferase compare
AO353_22645 +0.6 1.1 hypothetical protein compare
AO353_00505 +0.6 2.7 3-ketoacyl-CoA thiolase compare
AO353_16425 +0.6 0.9 Fe-S metabolism protein SufE compare
AO353_15410 +0.6 1.1 hypothetical protein compare
AO353_02595 +0.6 1.4 cobalamin synthase compare
AO353_21890 +0.6 3.0 molybdenum cofactor biosynthesis protein MoaC compare
AO353_08215 +0.6 1.9 thiazole synthase compare
AO353_23590 +0.6 1.1 ArsR family transcriptional regulator compare
AO353_14930 +0.6 1.4 GntR family transcriptional regulator compare
AO353_25740 +0.6 2.3 FMN-dependent NADH-azoreductase compare
AO353_18745 +0.6 1.7 flagellar biosynthesis protein flip compare
AO353_04185 +0.6 3.0 DeoR family transcriptional regulator compare
AO353_00260 +0.6 1.5 hypothetical protein compare
AO353_12710 +0.5 1.2 thioredoxin compare
AO353_23465 +0.5 3.5 ABC transporter permease compare
AO353_28210 +0.5 1.7 2-haloalkanoic acid dehalogenase compare
AO353_22520 +0.5 1.1 hypothetical protein compare
AO353_12720 +0.5 1.7 hypothetical protein compare
AO353_25450 +0.5 1.4 cyanate hydratase compare
AO353_08925 +0.5 3.1 hypothetical protein compare
AO353_01015 +0.5 1.5 hypothetical protein compare
AO353_21590 +0.5 2.7 isochorismatase compare
AO353_19490 +0.5 1.5 Fis family transcriptional regulator compare
AO353_13880 +0.5 2.5 acetyl-CoA acetyltransferase compare
AO353_03595 +0.5 1.9 hypothetical protein compare
AO353_13405 +0.5 1.6 urease accessory protein UreF compare
AO353_20425 +0.5 1.2 ArsC family transcriptional regulator compare
AO353_02220 +0.5 0.9 hypothetical protein compare
AO353_21935 +0.5 1.4 nitrite reductase compare
AO353_07460 +0.5 1.6 DNA-binding protein compare
AO353_05810 +0.5 1.9 dehydrogenase compare
AO353_14995 +0.5 2.2 16S rRNA methyltransferase compare
AO353_26465 +0.5 1.5 hypothetical protein compare
AO353_05620 +0.5 2.3 MFS transporter compare
AO353_00235 +0.5 1.7 transcriptional regulator compare
AO353_16030 +0.5 1.7 peptidase inhibitor I42 compare
AO353_23550 +0.5 2.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
AO353_00120 +0.5 1.7 DNA-binding protein compare
AO353_12465 +0.5 2.2 hypothetical protein compare
AO353_17235 +0.5 1.8 4-carboxymuconolactone decarboxylase compare
AO353_03495 +0.5 2.2 glycine cleavage system protein H compare
AO353_24605 +0.5 1.5 hypothetical protein compare
AO353_23980 +0.5 2.8 sugar ABC transporter substrate-binding protein compare
AO353_25360 +0.5 2.6 ubiquinol oxidase subunit II compare
AO353_08210 +0.5 2.2 tRNA (guanine-N7)-methyltransferase compare
AO353_23745 +0.5 2.3 acetylglucosaminylphosphatidylinositol deacetylase compare
AO353_08435 +0.5 1.7 phosphatidylglycerophosphatase compare
AO353_19340 +0.5 3.5 amino acid ABC transporter substrate-binding protein compare
AO353_05525 +0.5 2.7 dephospho-CoA kinase compare
AO353_07915 +0.5 2.0 hypothetical protein compare
AO353_27545 +0.5 2.6 hypothetical protein compare
AO353_06425 +0.5 0.9 lipoyl synthase compare
AO353_26390 +0.5 1.0 glyoxalase compare
AO353_09945 +0.5 1.7 LysR family transcriptional regulator compare
AO353_28080 +0.5 1.6 hypothetical protein compare
AO353_09395 +0.5 1.8 type VI secretion protein compare
AO353_27435 +0.4 0.7 hypothetical protein compare
AO353_11190 +0.4 3.5 ABC transporter compare
AO353_22955 +0.4 1.3 tRNA hydroxylase compare
AO353_13585 +0.4 1.8 predicted copper homeostasis protein (from data) compare
AO353_00385 +0.4 1.7 glycerophosphodiester phosphodiesterase compare
AO353_23410 +0.4 0.9 hypothetical protein compare
AO353_20100 +0.4 2.2 hypothetical protein compare
AO353_07755 +0.4 2.2 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_26795 +0.4 1.7 NAD-dependent deacetylase compare
AO353_12015 +0.4 1.4 antitoxin compare
AO353_26280 +0.4 1.7 peptidase M48, Ste24p compare
AO353_06345 +0.4 4.0 histidine kinase compare
AO353_23885 +0.4 2.2 AraC family transcriptional regulator compare
AO353_03140 +0.4 2.0 hypothetical protein compare
AO353_28945 +0.4 1.0 potassium-transporting ATPase subunit B compare
AO353_28450 +0.4 1.7 LysR family transcriptional regulator compare
AO353_02550 +0.4 1.4 TetR family transcriptional regulator compare
AO353_10990 +0.4 2.7 glutamate:protein symporter compare
AO353_27995 +0.4 1.9 RpiR family transcriptional regulator compare
AO353_22330 +0.4 1.8 AraC family transcriptional regulator compare
AO353_16795 +0.4 1.6 lysozyme compare
AO353_20700 +0.4 1.7 oxidoreductase compare
AO353_02200 +0.4 1.8 hypothetical protein compare
AO353_13840 +0.4 1.7 histidine kinase compare
AO353_11215 +0.4 2.4 ABC transporter permease compare
AO353_15295 +0.4 2.2 division/cell wall cluster transcriptional repressor MraZ compare
AO353_13095 +0.4 1.5 flagellar motor protein MotB compare
AO353_04775 +0.4 1.7 hypothetical protein compare
AO353_11965 +0.4 1.8 hypothetical protein compare
AO353_11795 +0.4 2.5 hypothetical protein compare
AO353_19310 +0.4 0.9 enoyl-CoA hydratase compare
AO353_23700 +0.4 1.8 hypothetical protein compare
AO353_18765 +0.4 1.5 hypothetical protein compare
AO353_15640 +0.4 1.6 acetylornithine aminotransferase compare
AO353_02700 +0.4 2.2 nucleoprotein/polynucleotide-associated enzyme compare
AO353_22135 +0.4 1.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_27575 +0.4 1.3 hypothetical protein compare
AO353_03000 +0.4 1.2 topoisomerase II compare
AO353_25865 +0.4 2.0 peptide ABC transporter permease compare
AO353_08780 +0.4 2.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_18060 +0.4 2.3 fimbrial protein compare
AO353_22700 +0.4 1.1 LexA family transcriptional regulator compare
AO353_18505 +0.4 0.9 translation initiation factor 2 compare
AO353_12125 +0.4 1.9 glutaredoxin compare
AO353_06580 +0.4 2.8 GNAT family acetyltransferase compare
AO353_07900 +0.4 1.4 hypothetical protein compare
AO353_23100 +0.4 2.1 antibiotic biosynthesis monooxygenase compare
AO353_10160 +0.4 2.4 hypothetical protein compare
AO353_28765 +0.4 1.7 hypothetical protein compare
AO353_17635 +0.4 2.6 RNA polymerase subunit sigma compare
AO353_18950 +0.4 1.9 metal-chelation protein CHAD compare
AO353_00665 +0.4 1.1 adenine phosphoribosyltransferase compare
AO353_03510 +0.4 1.0 glycine cleavage system protein T compare
AO353_13635 +0.4 2.0 hypothetical protein compare
AO353_05740 +0.4 1.6 hypothetical protein compare
AO353_27460 +0.4 1.3 hypothetical protein compare
AO353_06160 +0.4 1.6 transcriptional regulator compare
AO353_08820 +0.4 3.2 glycerol-3-phosphate transporter compare
AO353_19090 +0.4 0.9 MarR family transcriptional regulator compare
AO353_22105 +0.4 1.6 nitrate reductase compare
AO353_23265 +0.4 1.9 chromate resistance protein compare
AO353_28780 +0.4 1.7 hypothetical protein compare
AO353_26105 +0.4 1.6 structural protein P5 compare
AO353_12155 +0.4 2.0 penicillin-binding protein compare
AO353_00090 +0.4 1.0 hypothetical protein compare
AO353_10180 +0.4 2.5 hypothetical protein compare
AO353_06175 +0.4 1.7 shikimate dehydrogenase compare
AO353_27970 +0.4 1.9 ABC transporter substrate-binding protein compare
AO353_08955 +0.4 2.1 transcriptional regulator compare
AO353_22500 +0.4 0.8 hypothetical protein compare
AO353_26860 +0.4 2.3 hypothetical protein compare
AO353_00490 +0.4 1.3 PasA protein compare
AO353_00930 +0.4 1.6 phosphoserine phosphatase compare
AO353_17140 +0.4 1.8 2-hydroxy-3-oxopropionate reductase compare
AO353_28410 +0.4 2.0 acetyltransferase compare
AO353_27975 +0.4 2.0 ABC transporter compare
AO353_22830 +0.4 1.6 cupin compare
AO353_19990 +0.4 1.9 nitroreductase compare
AO353_11525 +0.4 2.5 aminotransferase compare
AO353_23635 +0.4 1.8 hypothetical protein compare
AO353_05435 +0.4 2.2 choline ABC transporter permease compare
AO353_24630 +0.4 2.7 hypothetical protein compare
AO353_16025 +0.4 1.4 hypothetical protein compare
AO353_15680 +0.4 1.1 cation-binding protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Benzethonium chloride in Pseudomonas fluorescens FW300-N2E3

For stress Benzethonium chloride across organisms