Experiment set3IT064 for Sphingomonas koreensis DSMZ 15582

Compare to:

D-Xylose carbon source

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0657 +1.6 4.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_1608 +1.6 13.9 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Ga0059261_1928 +1.4 8.1 Predicted permeases compare
Ga0059261_3652 +1.3 10.9 phosphate transport system regulatory protein PhoU compare
Ga0059261_2504 +1.3 10.7 ribosome silencing factor RsfS/YbeB/iojap compare
Ga0059261_3492 +1.3 7.8 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0685 +1.2 3.6 pyruvate kinase compare
Ga0059261_3579 +1.2 5.9 hypothetical protein compare
Ga0059261_4186 +1.1 3.4 Phosphopantetheine attachment site compare
Ga0059261_2285 +1.1 3.0 Fe2+ transport system protein A compare
Ga0059261_3490 +1.0 7.3 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_0225 +1.0 8.7 polyphosphate kinase 1 compare
Ga0059261_1929 +0.9 5.9 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_4022 +0.9 6.3 Signal transduction histidine kinase compare
Ga0059261_2018 +0.9 7.1 hypothetical protein compare
Ga0059261_2215 +0.9 3.0 Thiamine monophosphate synthase compare
Ga0059261_4185 +0.9 2.4 hypothetical protein compare
Ga0059261_3698 +0.9 7.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1050 +0.8 2.7 hypothetical protein compare
Ga0059261_1287 +0.8 6.6 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_2648 +0.8 3.6 Transcriptional regulators compare
Ga0059261_3810 +0.8 4.8 Transcriptional regulators compare
Ga0059261_2607 +0.8 3.7 transcriptional regulator, XRE family with cupin sensor compare
Ga0059261_1451 +0.8 3.8 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_0131 +0.8 4.5 hypothetical protein compare
Ga0059261_1578 +0.8 5.8 Rhodanese-like domain compare
Ga0059261_3605 +0.7 2.6 tRNA compare
Ga0059261_1487 +0.7 5.7 GMP synthase - Glutamine amidotransferase domain compare
Ga0059261_1527 +0.7 1.8 hypothetical protein compare
Ga0059261_1985 +0.7 2.6 transcriptional regulator NrdR compare
Ga0059261_1419 +0.7 3.7 fructose-6-phosphate aldolase, TalC/MipB family compare
Ga0059261_0209 +0.7 6.3 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_4199 +0.7 6.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3258 +0.7 5.9 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain compare
Ga0059261_3287 +0.7 4.8 Topoisomerase IB compare
Ga0059261_4139 +0.6 2.1 hypothetical protein compare
Ga0059261_0305 +0.6 3.2 bacterioferritin compare
Ga0059261_4196 +0.6 5.3 FemAB-related protein, PEP-CTERM system-associated compare
Ga0059261_1762 +0.6 1.3 hypothetical protein compare
Ga0059261_3659 +0.6 3.9 PqqD family protein, HPr-rel-A system compare
Ga0059261_3364 +0.6 5.7 PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family compare
Ga0059261_2286 +0.6 3.5 Fe2+ transport system protein B compare
Ga0059261_3783 +0.6 3.0 hypothetical protein compare
Ga0059261_1574 +0.6 2.1 Superfamily II DNA and RNA helicases compare
Ga0059261_2227 +0.6 5.4 aminodeoxychorismate synthase, component I, bacterial clade compare
Ga0059261_0062 +0.6 3.2 hypothetical protein compare
Ga0059261_0781 +0.6 1.5 hypothetical protein compare
Ga0059261_2020 +0.6 4.8 Glycosyltransferase compare
Ga0059261_4197 +0.6 4.7 sugar transferase, PEP-CTERM/EpsH1 system associated compare
Ga0059261_3657 +0.6 4.1 His Kinase A (phospho-acceptor) domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_0369 +0.6 1.5 ribosomal protein L9 compare
Ga0059261_0464 +0.6 1.8 hypothetical protein compare
Ga0059261_4001 +0.6 3.4 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
Ga0059261_3259 +0.6 4.9 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
Ga0059261_0208 +0.6 3.0 Response regulator receiver domain compare
Ga0059261_1912 +0.6 2.5 Nitroreductase compare
Ga0059261_4198 +0.6 4.8 exosortase A compare
Ga0059261_0387 +0.5 1.7 Type IV secretory pathway, TrbD component compare
Ga0059261_2619 +0.5 4.1 Protein involved in cellulose biosynthesis (CelD) compare
Ga0059261_3257 +0.5 3.4 glycine cleavage system H protein compare
Ga0059261_2368 +0.5 1.6 Phage baseplate assembly protein W compare
Ga0059261_4012 +0.5 1.4 AMP nucleosidase compare
Ga0059261_2746 +0.5 3.1 Predicted sugar nucleotidyltransferases compare
Ga0059261_2534 +0.5 2.6 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_1909 +0.5 3.6 MAF protein compare
Ga0059261_0390 +0.5 1.7 Ribbon-helix-helix protein, copG family compare
Ga0059261_4190 +0.5 4.2 Periplasmic protein involved in polysaccharide export compare
Ga0059261_4195 +0.5 3.9 polysaccharide deacetylase family protein, PEP-CTERM locus subfamily compare
Ga0059261_4194 +0.5 3.7 Type II secretory pathway, component ExeA (predicted ATPase) compare
Ga0059261_1017 +0.5 3.0 tRNA-guanine transglycosylase compare
Ga0059261_3356 +0.5 1.2 hypothetical protein compare
Ga0059261_2076 +0.5 0.9 hypothetical protein compare
Ga0059261_4193 +0.5 4.5 hypothetical protein compare
Ga0059261_4187 +0.5 3.6 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_4192 +0.5 2.2 ATPases involved in chromosome partitioning compare
Ga0059261_3598 +0.5 1.9 Flp pilus assembly protein, pilin Flp compare
Ga0059261_1303 +0.5 2.9 hypothetical protein compare
Ga0059261_1541 +0.5 3.8 Predicted esterase of the alpha/beta hydrolase fold compare
Ga0059261_1595 +0.5 4.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3909 +0.5 1.8 Predicted membrane protein compare
Ga0059261_3362 +0.5 4.3 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1386 +0.5 2.6 7-cyano-7-deazaguanine reductase compare
Ga0059261_2170 +0.5 3.9 Thioredoxin domain-containing protein compare
Ga0059261_3188 +0.5 3.9 Acetyltransferase (GNAT) domain compare
Ga0059261_0493 +0.5 1.1 hypothetical protein compare
Ga0059261_3658 +0.5 4.0 hypothetical protein compare
Ga0059261_3838 +0.5 2.1 Hemerythrin HHE cation binding domain compare
Ga0059261_3581 +0.5 2.3 Alpha/beta hydrolase family compare
Ga0059261_1092 +0.5 1.4 flagellar motor switch protein FliN compare
Ga0059261_0743 +0.5 3.6 Kef-type K+ transport systems, membrane components compare
Ga0059261_4188 +0.5 3.0 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_3748 +0.5 1.8 ribosomal protein L15, bacterial/organelle compare
Ga0059261_1385 +0.5 4.2 Glycosyltransferase compare
Ga0059261_1339 +0.5 1.0 hypothetical protein compare
Ga0059261_3988 +0.5 4.2 Methylmalonyl-CoA mutase, N-terminal domain/subunit compare
Ga0059261_1115 +0.5 1.1 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_0891 +0.4 1.6 hypothetical protein compare
Ga0059261_2626 +0.4 3.3 transcriptional regulator, DeoR family compare
Ga0059261_2277 +0.4 0.9 hypothetical protein compare
Ga0059261_1011 +0.4 2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Ga0059261_1122 +0.4 2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_2255 +0.4 1.9 nitrogen regulatory protein P-II family compare
Ga0059261_0060 +0.4 1.6 Uncharacterized conserved protein compare
Ga0059261_1368 +0.4 1.4 hypothetical protein compare
Ga0059261_3266 +0.4 3.9 ribonuclease R compare
Ga0059261_0057 +0.4 3.9 Glycosyltransferase compare
Ga0059261_3842 +0.4 3.9 PAS domain S-box compare
Ga0059261_3507 +0.4 3.7 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_2774 +0.4 1.4 Transcription elongation factor compare
Ga0059261_3660 +0.4 3.2 HprK-related kinase A compare
Ga0059261_2650 +0.4 3.5 glucose/galactose transporter compare
Ga0059261_4184 +0.4 2.8 exosortase A system-associated hydrolase 1 compare
Ga0059261_2570 +0.4 1.6 Type IV secretory pathway, TrbD component compare
Ga0059261_2413 +0.4 1.2 hypothetical protein compare
Ga0059261_0920 +0.4 1.8 rRNA methylases compare
Ga0059261_3759 +0.4 0.9 hypothetical protein compare
Ga0059261_1169 +0.4 1.4 hypothetical protein compare
Ga0059261_1380 +0.4 3.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_3562 +0.4 2.0 Glycosyltransferase compare
Ga0059261_3799 +0.4 1.4 hypothetical protein compare
Ga0059261_0069 +0.4 2.1 tRNA dimethylallyltransferase compare
Ga0059261_0551 +0.4 2.1 Cytochrome c2 compare
Ga0059261_3661 +0.4 3.3 Uncharacterised nucleotidyltransferase compare
Ga0059261_2737 +0.4 2.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
Ga0059261_2355 +0.4 2.7 Ogr/Delta-like zinc finger compare
Ga0059261_2754 +0.4 3.5 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_4002 +0.4 2.5 Esterase/lipase compare
Ga0059261_2745 +0.4 3.4 Myo-inositol-1-phosphate synthase compare
Ga0059261_3280 +0.4 1.3 Uncharacterized conserved protein compare
Ga0059261_3256 +0.4 3.2 glycine cleavage system T protein compare
Ga0059261_2415 +0.4 3.2 Phytoene/squalene synthetase compare
Ga0059261_4008 +0.4 2.5 Alpha/beta hydrolase family compare
Ga0059261_2344 +0.4 2.8 DNA modification methylase compare
Ga0059261_4191 +0.4 2.8 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily compare
Ga0059261_0266 +0.4 1.1 hypothetical protein compare
Ga0059261_3371 +0.4 1.1 hypothetical protein compare
Ga0059261_3881 +0.4 3.0 Osmosensitive K+ channel histidine kinase compare
Ga0059261_3784 +0.4 3.1 DNA mismatch repair protein MutS compare
Ga0059261_3885 +0.4 0.7 K+-transporting ATPase, C subunit compare
Ga0059261_1183 +0.4 1.8 Protein of unknown function (DUF2958) compare
Ga0059261_0040 +0.4 3.3 hypothetical protein compare
Ga0059261_2019 +0.4 1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_2259 +0.4 2.1 hypothetical protein compare
Ga0059261_3620 +0.4 1.5 molybdenum cofactor biosynthesis protein A, bacterial compare
Ga0059261_2744 +0.4 2.9 CDP-alcohol phosphatidyltransferase compare
Ga0059261_0933 +0.4 2.7 Molybdopterin biosynthesis enzyme compare
Ga0059261_0201 +0.4 2.9 Na+/H+-dicarboxylate symporters compare
Ga0059261_0227 +0.4 1.5 hypothetical protein compare
Ga0059261_3926 +0.4 3.1 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
Ga0059261_2907 +0.4 2.1 Acyl-CoA dehydrogenases compare
Ga0059261_2187 +0.4 2.9 Cell Wall Hydrolase compare
Ga0059261_1707 +0.4 1.2 hypothetical protein compare
Ga0059261_3451 +0.4 0.8 hypothetical protein compare
Ga0059261_4013 +0.4 1.1 hypothetical protein compare
Ga0059261_0282 +0.3 2.8 ribosomal protein S12 methylthiotransferase RimO compare
Ga0059261_2416 +0.3 2.0 TIGR00730 family protein compare
Ga0059261_0133 +0.3 1.5 GTP-binding protein HflX compare
Ga0059261_1483 +0.3 2.9 acetyl-CoA acetyltransferases compare
Ga0059261_3801 +0.3 1.7 Phosphate/sulphate permeases compare
Ga0059261_3207 +0.3 2.0 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_3975 +0.3 1.6 Predicted ATPase/kinase involved in NAD metabolism compare
Ga0059261_0285 +0.3 2.6 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] compare
Ga0059261_1774 +0.3 0.9 hypothetical protein compare
Ga0059261_0875 +0.3 1.2 Leucyl aminopeptidase compare
Ga0059261_0635 +0.3 2.3 choice-of-anchor A domain compare
Ga0059261_3498 +0.3 1.6 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_1492 +0.3 2.6 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_0257 +0.3 1.7 hypothetical protein compare
Ga0059261_0389 +0.3 2.1 P-type conjugative transfer ATPase TrbB compare
Ga0059261_2593 +0.3 1.4 hypothetical protein compare
Ga0059261_1465 +0.3 2.8 Predicted Zn-dependent peptidases compare
Ga0059261_3617 +0.3 2.5 hypothetical protein compare
Ga0059261_0141 +0.3 1.6 transcriptional regulator, LysR family compare
Ga0059261_0726 +0.3 1.0 hypothetical protein compare
Ga0059261_2795 +0.3 1.9 Predicted metal-dependent hydrolase of the TIM-barrel fold compare
Ga0059261_3216 +0.3 1.1 Acetyltransferases compare
Ga0059261_0734 +0.3 2.1 RNA compare
Ga0059261_1505 +0.3 2.1 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) compare
Ga0059261_1972 +0.3 2.2 Domain of unknown function (DUF3814) compare
Ga0059261_2062 +0.3 1.9 flagellar biosynthetic protein FliP compare
Ga0059261_0045 +0.3 1.2 hypothetical protein compare
Ga0059261_0982 +0.3 2.3 acetyl-CoA acetyltransferases compare
Ga0059261_2698 +0.3 2.2 N-acetylmuramoyl-L-alanine amidase compare
Ga0059261_3441 +0.3 1.5 hypothetical protein compare
Ga0059261_1110 +0.3 1.7 flagellar biosynthetic protein FliP compare
Ga0059261_2063 +0.3 1.2 Flagellar biosynthesis protein, FliO compare
Ga0059261_1409 +0.3 2.2 hypothetical protein compare
Ga0059261_4134 +0.3 1.4 tRNA compare
Ga0059261_0223 +0.3 0.9 Peptidase inhibitor I78 family compare
Ga0059261_3506 +0.3 0.6 Predicted permeases compare
Ga0059261_1381 +0.3 1.6 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0600 +0.3 1.6 CDP-glucose 4,6-dehydratase compare
Ga0059261_1490 +0.3 2.5 Glycosyltransferase compare
Ga0059261_3802 +0.3 2.2 Phosphate transport regulator (distant homolog of PhoU) compare
Ga0059261_3431 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2695 +0.3 2.1 Methyltransferase domain compare
Ga0059261_3403 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1193 +0.3 1.2 hypothetical protein compare
Ga0059261_3334 +0.3 2.2 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
Ga0059261_2091 +0.3 1.6 Flagellar hook capping protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Sphingomonas koreensis DSMZ 15582

For carbon source D-Xylose across organisms