Experiment set3IT063 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Chloramphenicol 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5527 -5.5 -3.8 Cold shock protein CspC compare
Pf6N2E2_2129 -5.4 -6.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2825 -4.8 -5.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2824 -4.1 -12.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2823 -4.1 -7.9 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5219 -4.0 -8.2 FIG140336: TPR domain protein compare
Pf6N2E2_4352 -3.9 -6.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3257 -3.7 -6.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2261 -3.6 -11.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_3666 -3.4 -5.3 InaA protein compare
Pf6N2E2_463 -3.3 -8.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_3835 -3.1 -4.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3258 -2.9 -7.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5430 -2.7 -9.1 Transglycosylase, Slt family compare
Pf6N2E2_4162 -2.6 -5.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3060 -2.6 -5.7 Outer membrane protein H precursor compare
Pf6N2E2_464 -2.5 -3.0 Sensory histidine kinase QseC compare
Pf6N2E2_3260 -2.4 -7.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5178 -2.3 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5727 -2.1 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_2973 -2.1 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2219 -2.1 -3.4 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4362 -2.1 -5.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5944 -2.1 -4.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4187 -2.1 -6.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2217 -2.1 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2473 -2.0 -2.1 Major outer membrane lipoprotein I compare
Pf6N2E2_2694 -1.9 -9.5 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_5987 -1.9 -7.3 OmpA family protein compare
Pf6N2E2_623 -1.9 -2.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4417 -1.8 -3.5 Protein of unknown function DUF484 compare
Pf6N2E2_4072 -1.8 -5.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3461 -1.8 -2.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4353 -1.8 -5.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2753 -1.7 -3.5 HtrA protease/chaperone protein compare
Pf6N2E2_3607 -1.7 -6.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3505 -1.7 -2.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_2218 -1.7 -5.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4075 -1.7 -5.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4153 -1.6 -2.3 Sensory box histidine kinase compare
Pf6N2E2_2574 -1.6 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_5181 -1.5 -10.1 Paraquat-inducible protein A compare
Pf6N2E2_5183 -1.5 -10.7 Paraquat-inducible protein B compare
Pf6N2E2_5006 -1.5 -8.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5986 -1.4 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_625 -1.4 -5.1 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5182 -1.4 -5.6 Paraquat-inducible protein A compare
Pf6N2E2_620 -1.4 -7.7 BatD compare
Pf6N2E2_5819 -1.3 -5.6 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p conserved
Pf6N2E2_3351 -1.3 -3.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5610 -1.3 -5.4 two-component system sensor protein compare
Pf6N2E2_3833 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_621 -1.2 -6.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3460 -1.2 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3039 -1.2 -5.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_624 -1.2 -4.8 hypothetical protein PA3071 compare
Pf6N2E2_2474 -1.2 -8.2 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_248 -1.2 -6.4 hypothetical protein compare
Pf6N2E2_5155 -1.2 -3.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3667 -1.1 -1.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4607 -1.1 -4.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_3516 -1.1 -2.7 Probable transmembrane protein compare
Pf6N2E2_3108 -1.1 -2.9 FIG00953405: hypothetical protein compare
Pf6N2E2_4638 -1.1 -2.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3270 -1.1 -2.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1596 -1.0 -2.7 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5534 -1.0 -5.3 FIG000859: hypothetical protein YebC compare
Pf6N2E2_2010 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_5093 -1.0 -8.4 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3040 -1.0 -5.2 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_649 -1.0 -2.9 General secretion pathway protein L compare
Pf6N2E2_4987 -1.0 -1.4 MaoC-like domain protein compare
Pf6N2E2_3062 -1.0 -3.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3504 -0.9 -6.7 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2471 -0.9 -6.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4372 -0.9 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_5780 -0.9 -5.6 Periplasmic protease compare
Pf6N2E2_5338 -0.9 -5.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_6058 -0.9 -3.6 FIG139976: hypothetical protein compare
Pf6N2E2_4059 -0.9 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_2755 -0.9 -2.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_4155 -0.9 -6.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3635 -0.9 -1.8 FIG00953138: hypothetical protein compare
Pf6N2E2_6057 -0.8 -2.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3665 -0.8 -1.0 serine/threonine protein kinase compare
Pf6N2E2_4459 -0.8 -1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_2067 -0.8 -7.4 cis/trans isomerase compare
Pf6N2E2_4710 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_1085 -0.8 -2.7 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2325 -0.8 -4.4 Recombination protein RecR compare
Pf6N2E2_3696 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_3856 -0.7 -4.5 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_953 -0.7 -2.5 FIG00958851: hypothetical protein compare
Pf6N2E2_4147 -0.7 -5.1 Fused spore maturation proteins A and B compare
Pf6N2E2_3568 -0.7 -2.1 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_2552 -0.7 -3.6 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5406 -0.7 -1.8 FIG00958224: hypothetical protein compare
Pf6N2E2_4886 -0.7 -5.7 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4074 -0.7 -5.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2790 -0.7 -1.6 Helix-turn-helix motif compare
Pf6N2E2_3515 -0.7 -3.8 Probable transmembrane protein compare
Pf6N2E2_1652 -0.7 -2.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2693 -0.7 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5536 -0.7 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4369 -0.7 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5846 -0.7 -5.2 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_469 -0.7 -2.0 lipoprotein, putative compare
Pf6N2E2_3786 -0.7 -1.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_309 -0.7 -0.8 FIG00957702: hypothetical protein compare
Pf6N2E2_712 -0.7 -3.2 hypothetical protein compare
Pf6N2E2_2714 -0.7 -1.1 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_4174 -0.7 -5.2 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_2880 -0.7 -2.1 FIG00959696: hypothetical protein compare
Pf6N2E2_2318 -0.7 -4.3 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2309 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_5919 -0.7 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_2938 -0.7 -2.3 Outer membrane lipoprotein compare
Pf6N2E2_55 -0.7 -2.1 Probable hydrolase compare
Pf6N2E2_622 -0.7 -2.3 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_338 -0.7 -1.0 Transcriptional regulator, AraC family compare
Pf6N2E2_3088 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_4416 -0.6 -1.2 Tyrosine recombinase XerC compare
Pf6N2E2_1774 -0.6 -1.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2935 -0.6 -4.4 NAD(FAD)-utilizing dehydrogenase, sll0175 homolog compare
Pf6N2E2_4342 -0.6 -2.6 Protein phosphatase ImpM compare
Pf6N2E2_3698 -0.6 -1.5 Nicotinamidase family protein YcaC compare
Pf6N2E2_2472 -0.6 -2.8 hypothetical protein compare
Pf6N2E2_3702 -0.6 -1.9 FIG00953907: hypothetical protein compare
Pf6N2E2_2128 -0.6 -2.7 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_122 -0.6 -1.5 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_4762 -0.6 -1.9 Biotin synthesis protein BioH compare
Pf6N2E2_3529 -0.6 -1.7 Toxin A compare
Pf6N2E2_1153 -0.6 -2.2 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_2311 -0.6 -3.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4439 -0.6 -4.1 Glutathione-regulated potassium-efflux system ATP-binding protein conserved
Pf6N2E2_3942 -0.6 -3.5 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3480 -0.6 -1.2 Transcriptional regulator, ArsR family compare
Pf6N2E2_4150 -0.6 -2.4 probable exported protein YPO0432 compare
Pf6N2E2_5339 -0.6 -2.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2201 -0.6 -1.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_5340 -0.6 -2.4 Stringent starvation protein A compare
Pf6N2E2_5605 -0.6 -2.3 FxsA protein compare
Pf6N2E2_896 -0.6 -1.8 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_1313 -0.6 -2.5 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
Pf6N2E2_4052 -0.6 -1.2 FIG00955481: hypothetical protein compare
Pf6N2E2_2390 -0.6 -1.7 FIG00959101: hypothetical protein compare
Pf6N2E2_1435 -0.6 -1.7 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1009 -0.6 -1.8 Inositol transport system permease protein compare
Pf6N2E2_2038 -0.6 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5593 -0.6 -2.1 Leucyl-tRNA synthetase compare
Pf6N2E2_5428 -0.6 -3.0 DNA recombination and repair protein RecO compare
Pf6N2E2_2586 -0.6 -0.8 Hpt domain protein compare
Pf6N2E2_2073 -0.6 -3.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_2469 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_5955 -0.6 -2.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_2470 -0.6 -3.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_178 -0.5 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_1797 -0.5 -1.3 Transcriptional regulator compare
Pf6N2E2_2003 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_2286 -0.5 -1.2 FIG00953287: hypothetical protein compare
Pf6N2E2_1147 -0.5 -1.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1661 -0.5 -3.2 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5845 -0.5 -2.8 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_1055 -0.5 -3.4 Transcriptional regulator MexT compare
Pf6N2E2_3610 -0.5 -2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2750 -0.5 -3.2 Putative permease PerM (= YfgO) compare
Pf6N2E2_579 -0.5 -1.3 FIG00962753: hypothetical protein compare
Pf6N2E2_6035 -0.5 -1.0 alpha/beta hydrolase fold compare
Pf6N2E2_2756 -0.5 -2.7 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3876 -0.5 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5902 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_6100 -0.5 -1.7 tRNA-Val-TAC compare
Pf6N2E2_1315 -0.5 -0.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_1044 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_5816 -0.5 -0.8 Smr domain protein compare
Pf6N2E2_2340 -0.5 -2.6 Transcriptional regulator, GntR family compare
Pf6N2E2_1959 -0.5 -2.1 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1917 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_3237 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_2488 -0.5 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2320 -0.5 -1.0 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4397 -0.5 -1.2 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_734 -0.5 -1.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1450 -0.5 -0.7 FIG00960438: hypothetical protein compare
Pf6N2E2_1279 -0.5 -1.3 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_51 -0.5 -3.3 hypothetical protein compare
Pf6N2E2_2126 -0.5 -2.9 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5633 -0.5 -4.2 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2313 -0.5 -1.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2012 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_4773 -0.5 -0.7 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1848 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_4169 -0.5 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5794 -0.5 -0.9 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3753 -0.5 -4.0 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2870 -0.5 -1.6 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2736 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_546 -0.5 -0.6 FIG00966904: hypothetical protein compare
Pf6N2E2_521 -0.5 -2.3 hypothetical protein compare
Pf6N2E2_3569 -0.5 -0.9 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Chloramphenicol in Pseudomonas fluorescens FW300-N2E2

For stress Chloramphenicol across organisms