Experiment set3IT063 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Nigericin sodium salt 1e-04 mM

200 most important genes:

  gene name fitness t score description  
BBR_RS10255 -6.5 -4.5 chromosomal replication initiator protein DnaA compare
BBR_RS12590 -4.0 -3.9 beta-1,6-N-acetylglucosaminyltransferase compare
BBR_RS12545 -3.6 -5.5 DUF4012 domain-containing protein compare
BBR_RS10620 -3.1 -5.2 phosphoprotein phosphatase compare
BBR_RS16425 -2.9 -3.4 DUF3071 domain-containing protein compare
BBR_RS19450 -2.9 -2.0 GTPase ObgE compare
BBR_RS14215 -2.9 -3.8 peptidase compare
BBR_RS15070 -2.7 -4.7 endolytic transglycosylase MltG compare
BBR_RS14190 -2.7 -10.4 transcriptional regulator compare
BBR_RS16635 -2.5 -2.4 ABC transporter ATP-binding protein compare
BBR_RS10625 -2.5 -2.9 FHA domain-containing protein compare
BBR_RS16220 -2.5 -2.0 DNA cytosine methyltransferase compare
BBR_RS16750 -2.4 -2.8 ParA family protein compare
BBR_RS13635 -2.3 -9.4 carbamoyl-phosphate synthase large subunit compare
BBR_RS19435 -2.3 -2.7 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS15085 -2.2 -2.0 3-dehydroquinate synthase compare
BBR_RS15080 -2.1 -3.5 chorismate synthase compare
BBR_RS12295 -2.1 -2.1 RNA-binding protein compare
BBR_RS19465 -2.0 -3.7 ribonuclease E/G compare
BBR_RS13035 -2.0 -1.3 ABC transporter permease compare
BBR_RS20460 -1.9 -4.5 chromosome partitioning protein ParB compare
BBR_RS16675 -1.9 -3.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS13070 -1.9 -1.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS15860 -1.9 -1.2 DUF2316 domain-containing protein compare
BBR_RS19125 -1.9 -8.3 hypothetical protein compare
BBR_RS19815 -1.9 -15.0 ABC transporter permease compare
BBR_RS16490 -1.8 -5.3 polyprenyl synthase compare
BBR_RS13030 -1.8 -1.2 cell division ATP-binding protein FtsE compare
BBR_RS18565 -1.8 -1.3 CHAP domain-containing protein compare
BBR_RS20465 -1.7 -6.7 chromosome partitioning protein compare
BBR_RS10940 -1.7 -10.8 DedA family protein compare
BBR_RS19820 -1.7 -13.4 ATP-binding protein of ABC transporter system compare
BBR_RS16955 -1.7 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS14205 -1.7 -3.1 hypothetical protein compare
BBR_RS19120 -1.6 -7.7 helicase compare
BBR_RS14265 -1.6 -4.5 Solute-binding protein of ABC transporter system for metals compare
BBR_RS19070 -1.6 -1.5 50S ribosomal protein L33 compare
BBR_RS18180 -1.6 -8.4 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS16640 -1.6 -3.4 ABC transporter permease compare
BBR_RS11510 -1.5 -1.8 signal recognition particle-docking protein FtsY compare
BBR_RS17495 -1.5 -8.4 DUF58 domain-containing protein compare
BBR_RS13910 -1.5 -1.1 arginine repressor compare
BBR_RS12045 -1.5 -3.8 hypothetical protein compare
BBR_RS19355 -1.5 -1.9 tRNA-Gly compare
BBR_RS15055 -1.4 -2.9 hypothetical protein compare
BBR_RS14540 -1.4 -3.0 Na+/H+ antiporter NhaA compare
BBR_RS21015 -1.4 -1.9 hypothetical protein compare
BBR_RS10580 -1.4 -2.1 septation inhibitor protein compare
BBR_RS19160 -1.4 -1.8 phosphate ABC transporter permease subunit PstC compare
BBR_RS18690 -1.4 -6.2 diacylglycerol kinase compare
BBR_RS17505 -1.4 -7.5 VWA domain-containing protein compare
BBR_RS19190 -1.4 -5.7 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS17510 -1.3 -6.0 VWA domain-containing protein compare
BBR_RS18175 -1.3 -1.7 GTP cyclohydrolase I FolE compare
BBR_RS19540 -1.3 -1.5 homoserine dehydrogenase compare
BBR_RS15520 -1.3 -2.8 shikimate 5-dehydrogenase compare
BBR_RS14370 -1.3 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS15435 -1.3 -3.4 dihydroorotase compare
BBR_RS13450 -1.3 -2.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS16135 -1.3 -2.4 peptide deformylase compare
BBR_RS16625 -1.2 -3.9 DUF3710 domain-containing protein compare
BBR_RS19155 -1.2 -6.1 phosphate ABC transporter, permease protein PstA compare
BBR_RS15440 -1.2 -3.7 orotidine-5'-phosphate decarboxylase compare
BBR_RS18745 -1.2 -1.3 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS11540 -1.2 -2.9 DUF1727 domain-containing protein compare
BBR_RS15425 -1.2 -1.9 aspartate carbamoyltransferase compare
BBR_RS20480 -1.1 -0.9 membrane protein compare
BBR_RS14260 -1.1 -0.8 ABC transporter ATP-binding protein compare
BBR_RS18215 -1.1 -5.3 AI-2E family transporter compare
BBR_RS18050 -1.1 -2.2 threonylcarbamoyl-AMP synthase compare
BBR_RS17490 -1.1 -7.1 MoxR family ATPase compare
BBR_RS12235 -1.1 -1.2 hypothetical protein compare
BBR_RS17515 -1.0 -5.4 hypothetical protein compare
BBR_RS12605 -1.0 -2.4 glycosyltransferase family 2 protein compare
BBR_RS13490 -1.0 -1.5 30S ribosomal protein S7 compare
BBR_RS16905 -1.0 -3.8 hypothetical protein compare
BBR_RS11185 -1.0 -2.4 type I DNA topoisomerase compare
BBR_RS16845 -1.0 -0.8 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS16960 -1.0 -2.6 transcriptional regulator MraZ compare
BBR_RS13750 -1.0 -2.1 DivIVA domain-containing protein compare
BBR_RS13980 -0.9 -3.4 HD domain-containing protein compare
BBR_RS15455 -0.9 -1.5 orotate phosphoribosyltransferase compare
BBR_RS11720 -0.9 -3.7 DUF2469 domain-containing protein compare
BBR_RS21170 -0.9 -5.6 membrane protein insertion efficiency factor YidD compare
BBR_RS16985 -0.9 -2.9 transcriptional repressor LexA compare
BBR_RS11175 -0.9 -6.5 penicillin-binding protein compare
BBR_RS20455 -0.9 -4.0 thioredoxin-disulfide reductase compare
BBR_RS19375 -0.9 -1.2 acyl-CoA carboxylase subunit beta compare
BBR_RS17500 -0.9 -4.1 hypothetical protein compare
BBR_RS14615 -0.9 -4.4 histidine kinase compare
BBR_RS13640 -0.9 -3.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS16540 -0.9 -3.1 XRE family transcriptional regulator compare
BBR_RS19740 -0.9 -7.6 DUF2142 domain-containing protein compare
BBR_RS16175 -0.9 -2.6 DNA integration/recombination/inversion protein compare
BBR_RS12355 -0.8 -2.3 ribonuclease III compare
BBR_RS16535 -0.8 -2.2 DUF3046 domain-containing protein compare
BBR_RS16440 -0.8 -2.0 SGNH/GDSL hydrolase family protein compare
BBR_RS12980 -0.8 -5.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17135 -0.8 -0.7 RluA family pseudouridine synthase compare
BBR_RS17290 -0.8 -4.2 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS19755 -0.8 -5.2 glycosyl transferase compare
BBR_RS13805 -0.7 -1.4 hypothetical protein compare
BBR_RS20415 -0.7 -6.4 G5 domain-containing protein compare
BBR_RS18795 -0.7 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
BBR_RS13985 -0.7 -2.4 membrane protein compare
BBR_RS12305 -0.7 -3.0 endonuclease/exonuclease/phosphatase family protein compare
BBR_RS18220 -0.7 -5.2 glycosyltransferase family 2 protein compare
BBR_RS20750 -0.7 -1.9 GntR family transcriptional regulator compare
BBR_RS16530 -0.7 -2.7 recombinase RecA compare
BBR_RS11590 -0.7 -0.7 30S ribosomal protein S18 compare
BBR_RS14210 -0.7 -0.4 hypothetical protein compare
BBR_RS13630 -0.7 -2.8 carbamoyl-phosphate synthase small subunit compare
BBR_RS12710 -0.7 -2.7 hypothetical protein compare
BBR_RS13040 -0.7 -0.6 CHAP domain-containing protein compare
BBR_RS15650 -0.7 -1.3 Holliday junction resolvase compare
BBR_RS15785 -0.7 -1.3 CDP-alcohol phosphatidyltransferase family protein compare
BBR_RS13740 -0.7 -2.1 DUF3052 domain-containing protein compare
BBR_RS12785 -0.7 -2.2 transcriptional regulator compare
BBR_RS18990 -0.7 -1.5 AbrB family transcriptional regulator compare
BBR_RS20840 -0.7 -2.1 hypothetical protein compare
BBR_RS16950 -0.7 -1.3 hypothetical protein compare
BBR_RS10905 -0.7 -2.6 nucleotide exchange factor GrpE compare
BBR_RS11470 -0.7 -0.8 6-phosphogluconolactonase compare
BBR_RS12940 -0.6 -3.3 hypothetical protein compare
BBR_RS15050 -0.6 -1.1 DUF948 domain-containing protein compare
BBR_RS12310 -0.6 -1.0 signal recognition particle protein compare
BBR_RS19165 -0.6 -1.1 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS18735 -0.6 -3.2 hypothetical protein compare
BBR_RS11770 -0.6 -1.8 chorismate mutase compare
BBR_RS16430 -0.6 -1.7 nucleotide pyrophosphatase compare
BBR_RS18185 -0.6 -2.8 hypoxanthine phosphoribosyltransferase compare
BBR_RS20935 -0.6 -1.2 hypothetical protein compare
BBR_RS12975 -0.6 -4.6 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS21095 -0.6 -1.8 chemotaxis protein compare
BBR_RS10265 -0.6 -4.1 DNA replication and repair protein RecF compare
BBR_RS16240 -0.6 -2.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS11240 -0.6 -2.1 GtrA family protein compare
BBR_RS10755 -0.6 -2.3 adenylosuccinate synthase compare
BBR_RS19535 -0.6 -4.8 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS12820 -0.6 -4.0 hypothetical protein compare
BBR_RS15680 -0.6 -3.0 succinate--CoA ligase subunit alpha compare
BBR_RS11595 -0.6 -2.2 50S ribosomal protein L9 compare
BBR_RS19055 -0.6 -1.0 ferredoxin family protein compare
BBR_RS12505 -0.6 -0.9 ABC transporter permease compare
BBR_RS19170 -0.6 -4.6 DNA-binding response regulator compare
BBR_RS13125 -0.6 -0.7 ABC transporter permease compare
BBR_RS20440 -0.5 -2.2 NUDIX hydrolase compare
BBR_RS15805 -0.5 -2.4 prolipoprotein diacylglyceryl transferase compare
BBR_RS16140 -0.5 -3.3 long-chain fatty acid--CoA ligase compare
BBR_RS11180 -0.5 -4.7 phosphatase PAP2 family protein compare
BBR_RS14070 -0.5 -2.3 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS20795 -0.5 -0.9 cystathionine gamma-lyase compare
BBR_RS15450 -0.5 -2.0 dihydroorotate dehydrogenase compare
BBR_RS15675 -0.5 -2.4 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS14200 -0.5 -1.8 WhiB family transcriptional regulator compare
BBR_RS19945 -0.5 -3.0 MarR family transcriptional regulator compare
BBR_RS11975 -0.5 -2.2 hypothetical protein compare
BBR_RS20775 -0.5 -0.9 DUF4230 domain-containing protein compare
BBR_RS16655 -0.5 -1.6 tyrosine recombinase XerC compare
BBR_RS14625 -0.5 -2.6 pyrroline-5-carboxylate reductase compare
BBR_RS15445 -0.5 -2.0 dihydroorotate dehydrogenase electron transfer subunit compare
BBR_RS19640 -0.5 -0.5 phosphoesterase compare
BBR_RS14230 -0.5 -1.6 HAMP domain-containing histidine kinase compare
BBR_RS16065 -0.5 -1.7 DUF488 domain-containing protein compare
BBR_RS20475 -0.5 -4.1 KH domain-containing protein compare
BBR_RS18140 -0.5 -0.9 tRNA-Asp compare
BBR_RS18035 -0.5 -1.1 oligoribonuclease compare
BBR_RS19915 -0.5 -3.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
BBR_RS19095 -0.5 -3.8 magnesium transporter compare
BBR_RS12175 -0.4 -3.0 TetR/AcrR family transcriptional regulator compare
BBR_RS12555 -0.4 -2.9 protein-tyrosine-phosphatase compare
BBR_RS14550 -0.4 -2.6 hypothetical protein compare
BBR_RS19260 -0.4 -3.7 hypothetical protein compare
BBR_RS15180 -0.4 -2.8 long-chain fatty acid--CoA ligase compare
BBR_RS12900 -0.4 -1.0 DeoR/GlpR transcriptional regulator compare
BBR_RS14850 -0.4 -1.0 VOC family protein compare
BBR_RS14330 -0.4 -0.5 glycogen debranching enzyme GlgX compare
BBR_RS17040 -0.4 -1.9 hypothetical protein compare
BBR_RS15760 -0.4 -1.4 MerR family transcriptional regulator compare
BBR_RS19520 -0.4 -2.2 DUF1778 domain-containing protein compare
BBR_RS15685 -0.4 -2.9 hypothetical protein compare
BBR_RS20420 -0.4 -2.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS10740 -0.4 -0.9 tRNA-Gly compare
BBR_RS16755 -0.4 -1.9 site-specific tyrosine recombinase XerD compare
BBR_RS19795 -0.4 -3.6 hypothetical protein compare
BBR_RS14960 -0.4 -2.0 alpha/beta hydrolase compare
BBR_RS20745 -0.4 -1.3 hypothetical protein compare
BBR_RS16940 -0.4 -1.7 hypothetical protein compare
BBR_RS16555 -0.4 -0.4 DNA translocase FtsK compare
BBR_RS18725 -0.4 -0.9 ribonuclease HI compare
BBR_RS17480 -0.4 -2.0 hypothetical protein compare
BBR_RS12450 -0.4 -1.4 signal peptidase I compare
BBR_RS16170 -0.4 -1.1 hypothetical protein compare
BBR_RS16620 -0.4 -1.9 DUF3159 domain-containing protein compare
BBR_RS19750 -0.4 -3.5 LTA synthase family protein compare
BBR_RS10660 -0.4 -3.3 esterase compare
BBR_RS12325 -0.4 -2.2 type 1 glutamine amidotransferase compare
BBR_RS20450 -0.4 -3.3 murein biosynthesis integral membrane protein MurJ compare
BBR_RS11805 -0.4 -2.3 hypothetical protein compare
BBR_RS18635 -0.4 -2.1 PspC domain-containing protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Nigericin sodium salt across organisms