Experiment set3IT063 for Burkholderia phytofirmans PsJN

Compare to:

L-Proline nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17675 -7.1 -2.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17690 -6.9 -9.5 imidazole glycerol phosphate synthase compare
BPHYT_RS16245 -6.8 -4.7 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17670 -6.8 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14895 -6.7 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33865 -6.5 -7.7 tryptophan synthase alpha chain compare
BPHYT_RS33915 -6.5 -8.6 isopropylmalate isomerase compare
BPHYT_RS15920 -6.4 -9.7 argininosuccinate synthase compare
BPHYT_RS06555 -6.3 -9.7 ketol-acid reductoisomerase compare
BPHYT_RS17395 -6.3 -2.0 anthranilate synthase subunit II compare
BPHYT_RS17890 -6.1 -3.4 shikimate kinase compare
BPHYT_RS33880 -6.0 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS12985 -5.9 -3.7 amino acid acetyltransferase compare
BPHYT_RS33835 -5.9 -8.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS14845 -5.8 -4.9 cysteine synthase compare
BPHYT_RS10100 -5.8 -4.0 dihydroxy-acid dehydratase compare
BPHYT_RS33875 -5.7 -11.3 tryptophan synthase subunit alpha compare
BPHYT_RS12150 -5.7 -18.9 PII uridylyl-transferase compare
BPHYT_RS09515 -5.6 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12940 -5.6 -8.1 signal transduction histidine kinase compare
BPHYT_RS17685 -5.6 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14910 -5.6 -8.8 chorismate mutase compare
BPHYT_RS18320 -5.5 -13.4 orotate phosphoribosyltransferase compare
BPHYT_RS03150 -5.5 -15.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS08960 -5.5 -3.0 threonine synthase compare
BPHYT_RS08955 -5.4 -5.3 homoserine dehydrogenase compare
BPHYT_RS15915 -5.4 -10.4 ornithine carbamoyltransferase compare
BPHYT_RS33900 -5.4 -13.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS03640 -5.3 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06545 -5.3 -11.6 acetolactate synthase compare
BPHYT_RS04725 -5.3 -9.9 sulfite reductase compare
BPHYT_RS14915 -5.2 -7.7 phosphoserine aminotransferase compare
BPHYT_RS17390 -5.2 -16.2 anthranilate synthase subunit I compare
BPHYT_RS02905 -5.2 -20.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS06900 -5.1 -7.0 aspartate aminotransferase compare
BPHYT_RS13705 -5.0 -5.8 chorismate synthase compare
BPHYT_RS17680 -5.0 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16675 -5.0 -3.4 dihydroorotase compare
BPHYT_RS17400 -5.0 -8.4 anthranilate phosphoribosyltransferase compare
BPHYT_RS16840 -5.0 -3.4 transketolase compare
BPHYT_RS16735 -4.9 -6.0 phosphogluconate dehydratase compare
BPHYT_RS14190 -4.9 -10.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33645 -4.9 -7.0 homoserine kinase compare
BPHYT_RS19355 -4.8 -21.6 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase conserved
BPHYT_RS01595 -4.7 -8.0 homoserine O-acetyltransferase compare
BPHYT_RS03535 -4.6 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12935 -4.6 -6.2 chemotaxis protein CheY compare
BPHYT_RS04965 -4.5 -9.7 ATP-binding protein compare
BPHYT_RS04740 -4.5 -5.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS06045 -4.5 -9.6 transaldolase compare
BPHYT_RS06405 -4.5 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS12530 -4.5 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS15590 -4.4 -6.1 amino acid ABC transporter ATPase conserved
BPHYT_RS17855 -4.4 -15.3 glutamate synthase compare
BPHYT_RS01590 -4.3 -8.8 methionine biosynthesis protein MetW compare
BPHYT_RS04955 -4.3 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS05960 -4.3 -8.0 endoribonuclease L-PSP compare
BPHYT_RS16255 -4.2 -5.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS15670 -4.1 -7.4 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS16905 -4.1 -4.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17715 -4.0 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15600 -4.0 -12.9 ABC transporter ATP-binding protein compare
BPHYT_RS12845 -4.0 -13.7 ATPase compare
BPHYT_RS17885 -4.0 -5.6 3-dehydroquinate synthase compare
BPHYT_RS13220 -4.0 -7.1 phosphomethylpyrimidine synthase compare
BPHYT_RS09500 -3.8 -6.9 glucose-6-phosphate isomerase compare
BPHYT_RS17700 -3.7 -4.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17530 -3.6 -4.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33840 -3.6 -5.7 amidophosphoribosyltransferase compare
BPHYT_RS17520 -3.6 -8.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS15605 -3.5 -10.5 ABC transporter permease compare
BPHYT_RS03645 -3.4 -3.6 tRNA dimethylallyltransferase compare
BPHYT_RS04730 -3.4 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS15415 -3.4 -14.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04920 -3.4 -2.7 aspartate 1-decarboxylase compare
BPHYT_RS03725 -3.3 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS04820 -3.2 -7.1 LysR family transcriptional regulator compare
BPHYT_RS03625 -3.1 -9.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS04720 -3.1 -3.4 transcriptional regulator compare
BPHYT_RS17405 -3.0 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS15595 -3.0 -9.3 ABC transporter compare
BPHYT_RS14195 -3.0 -3.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS08850 -3.0 -2.5 transcriptional regulator compare
BPHYT_RS12055 -3.0 -15.1 phosphoenolpyruvate synthase compare
BPHYT_RS12840 -3.0 -5.5 pyruvate dehydrogenase compare
BPHYT_RS02590 -3.0 -6.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18705 -2.9 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS13605 -2.8 -1.5 tRNA-Pro compare
BPHYT_RS08565 -2.8 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS06685 -2.8 -2.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS33905 -2.8 -1.4 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS29720 -2.7 -1.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS12465 -2.6 -4.2 inositol monophosphatase compare
BPHYT_RS15610 -2.6 -10.8 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS15620 -2.6 -5.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02160 -2.5 -4.9 8-amino-7-oxononanoate synthase compare
BPHYT_RS16710 -2.4 -1.6 LysR family transcriptional regulator compare
BPHYT_RS36275 -2.3 -3.2 hypothetical protein compare
BPHYT_RS08950 -2.3 -4.8 aminotransferase compare
BPHYT_RS02150 -2.2 -3.3 biotin synthase compare
BPHYT_RS02155 -2.2 -4.6 dithiobiotin synthetase compare
BPHYT_RS05610 -2.2 -13.3 DNA-cytosine methyltransferase compare
BPHYT_RS13645 -2.2 -13.8 threonine--tRNA ligase compare
BPHYT_RS06610 -2.2 -2.3 triosephosphate isomerase compare
BPHYT_RS19325 -2.2 -3.2 glycine cleavage system H protein compare
BPHYT_RS26965 -2.2 -1.1 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS09860 -2.1 -1.3 pilus assembly protein PilP compare
BPHYT_RS08600 -2.1 -1.8 hypothetical protein compare
BPHYT_RS05030 -2.0 -3.9 sugar ABC transporter permease compare
BPHYT_RS09650 -2.0 -2.5 hypothetical protein compare
BPHYT_RS14900 -2.0 -2.7 prephenate dehydrogenase compare
BPHYT_RS03495 -1.9 -4.5 hypothetical protein compare
BPHYT_RS14550 -1.9 -1.4 tRNA-Asn compare
BPHYT_RS17760 -1.9 -5.2 ABC transporter permease compare
BPHYT_RS29920 -1.9 -1.0 hypothetical protein compare
BPHYT_RS16270 -1.9 -4.4 phosphoglycerate kinase compare
BPHYT_RS17380 -1.9 -6.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS21485 -1.8 -1.4 hypothetical protein compare
BPHYT_RS02165 -1.8 -6.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS16975 -1.8 -4.8 shikimate 5-dehydrogenase compare
BPHYT_RS15615 -1.8 -4.5 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS17745 -1.8 -3.9 toluene tolerance family protein compare
BPHYT_RS05905 -1.8 -1.5 hypothetical protein compare
BPHYT_RS05215 -1.7 -4.5 DNA-binding protein compare
BPHYT_RS27085 -1.7 -1.9 alkylhydroperoxidase compare
BPHYT_RS13390 -1.7 -1.1 IclR family transcriptional regulator compare
BPHYT_RS02540 -1.7 -1.9 hypothetical protein compare
BPHYT_RS18340 -1.7 -1.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04745 -1.7 -1.7 sulfate adenylyltransferase compare
BPHYT_RS04285 -1.7 -2.3 rhamnosyltransferase compare
BPHYT_RS20220 -1.6 -1.7 antibiotic synthesis protein MbtH compare
BPHYT_RS05705 -1.6 -1.2 hypothetical protein compare
BPHYT_RS07835 -1.6 -2.7 muconolactone delta-isomerase compare
BPHYT_RS35675 -1.5 -1.2 short-chain dehydrogenase compare
BPHYT_RS17035 -1.5 -2.0 sugar kinase compare
BPHYT_RS06550 -1.5 -3.3 acetolactate synthase compare
BPHYT_RS06985 -1.5 -3.8 fumarate hydratase compare
BPHYT_RS16835 -1.5 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS01455 -1.5 -0.9 peptide deformylase compare
BPHYT_RS02610 -1.5 -2.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS12550 -1.5 -1.3 GTP-binding protein HflX compare
BPHYT_RS06600 -1.5 -1.9 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS23230 -1.4 -1.8 histidine kinase compare
BPHYT_RS06410 -1.4 -2.1 transcriptional regulator compare
BPHYT_RS25005 -1.4 -1.2 FMN reductase compare
BPHYT_RS10165 -1.4 -1.8 transcriptional regulator compare
BPHYT_RS05010 -1.4 -2.6 RpiR family transcriptional regulator compare
BPHYT_RS17265 -1.4 -1.4 cell division protein compare
BPHYT_RS28075 -1.4 -1.0 cytochrome B561 compare
BPHYT_RS05480 -1.4 -7.1 NAD synthetase compare
BPHYT_RS03410 -1.4 -1.6 queuine tRNA-ribosyltransferase compare
BPHYT_RS14865 -1.3 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03215 -1.3 -2.1 TetR family transcriptional regulator compare
BPHYT_RS06375 -1.3 -3.8 ribonuclease compare
BPHYT_RS17445 -1.3 -3.5 GTP-binding protein YchF compare
BPHYT_RS17945 -1.3 -1.5 cytochrome C biogenesis protein compare
BPHYT_RS33920 -1.3 -5.1 type II citrate synthase compare
BPHYT_RS02880 -1.3 -1.3 ATP-dependent protease compare
BPHYT_RS17765 -1.3 -1.9 toluene ABC transporter ATP-binding protein compare
BPHYT_RS34320 -1.3 -2.7 DNA-binding protein compare
BPHYT_RS33850 -1.3 -1.4 sporulation protein compare
BPHYT_RS21910 -1.3 -2.6 ABC transporter permease compare
BPHYT_RS15710 -1.3 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS18590 -1.2 -0.8 hypothetical protein compare
BPHYT_RS22885 -1.2 -2.8 hypothetical protein compare
BPHYT_RS31400 -1.2 -1.1 methyl-accepting chemotaxis protein compare
BPHYT_RS22145 -1.2 -1.8 phosphoesterase compare
BPHYT_RS23650 -1.2 -1.0 hypothetical protein compare
BPHYT_RS33580 -1.2 -3.8 geranyltranstransferase compare
BPHYT_RS29630 -1.2 -1.8 SAM-dependent methyltransferase compare
BPHYT_RS14920 -1.2 -0.9 hypothetical protein compare
BPHYT_RS10645 -1.2 -1.3 cyanate hydratase compare
BPHYT_RS22855 -1.2 -2.3 aldehyde-activating protein compare
BPHYT_RS17100 -1.2 -3.9 RNA pyrophosphohydrolase compare
BPHYT_RS08030 -1.2 -3.1 transposase compare
BPHYT_RS07165 -1.2 -1.6 peptide ABC transporter permease compare
BPHYT_RS21625 -1.1 -0.9 LysR family transcriptional regulator compare
BPHYT_RS14095 -1.1 -1.6 phosphohistidine phosphatase compare
BPHYT_RS02975 -1.1 -2.5 membrane protein compare
BPHYT_RS33170 -1.1 -2.1 acetyltransferase compare
BPHYT_RS24315 -1.1 -1.7 phosphoribosyltransferase compare
BPHYT_RS26655 -1.1 -4.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
BPHYT_RS11075 -1.1 -2.4 membrane protein compare
BPHYT_RS20715 -1.1 -1.6 peptidase compare
BPHYT_RS05515 -1.1 -2.9 hypothetical protein compare
BPHYT_RS10475 -1.1 -1.5 mammalian cell entry protein compare
BPHYT_RS09735 -1.1 -1.9 glycosyl transferase compare
BPHYT_RS07435 -1.1 -1.6 amino acid transporter compare
BPHYT_RS14855 -1.1 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03570 -1.1 -4.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS05235 -1.1 -1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS28930 -1.1 -0.9 chromosome partitioning protein ParA compare
BPHYT_RS01485 -1.1 -0.7 histidine kinase compare
BPHYT_RS06990 -1.1 -1.2 membrane protein compare
BPHYT_RS26670 -1.1 -2.9 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS26080 -1.1 -1.2 ABC transporter ATPase compare
BPHYT_RS00055 -1.1 -1.3 hypothetical protein compare
BPHYT_RS16435 -1.1 -6.8 alcohol dehydrogenase compare
BPHYT_RS11705 -1.1 -1.1 hypothetical protein compare
BPHYT_RS26675 -1.1 -1.6 precorrin-6Y C5,15-methyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source L-Proline in Burkholderia phytofirmans PsJN

For nitrogen source L-Proline across organisms