Experiment set3IT063 for Burkholderia phytofirmans PsJN

Compare to:

L-Proline nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS05730 +2.1 3.0 hypothetical protein compare
BPHYT_RS06975 +1.8 4.4 glutamate racemase compare
BPHYT_RS23445 +1.6 2.5 hexuronate transporter compare
BPHYT_RS02860 +1.6 2.4 membrane protein compare
BPHYT_RS33535 +1.5 12.5 RNA polymerase sigma factor RpoD compare
BPHYT_RS26775 +1.4 1.8 chemotaxis protein CheB compare
BPHYT_RS26300 +1.3 1.8 ATP-dependent DNA ligase compare
BPHYT_RS30845 +1.3 2.1 polyketide cyclase compare
BPHYT_RS27370 +1.3 2.8 CoA transferase compare
BPHYT_RS11960 +1.3 1.5 MarR family transcriptional regulator compare
BPHYT_RS18665 +1.3 6.9 GumN family protein compare
BPHYT_RS10215 +1.2 2.0 sulfate transporter compare
BPHYT_RS27720 +1.2 1.5 hypothetical protein compare
BPHYT_RS20095 +1.2 1.2 transcriptional regulator compare
BPHYT_RS29320 +1.2 2.6 histidine kinase compare
BPHYT_RS27570 +1.2 2.2 universal stress protein UspA compare
BPHYT_RS09895 +1.2 1.7 LysR family transcriptional regulator compare
BPHYT_RS30185 +1.2 2.0 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS08405 +1.2 1.6 hypothetical protein compare
BPHYT_RS31675 +1.2 3.4 hypothetical protein compare
BPHYT_RS09585 +1.1 1.9 hypothetical protein compare
BPHYT_RS25135 +1.1 2.9 hypothetical protein compare
BPHYT_RS23090 +1.1 1.8 histidine kinase compare
BPHYT_RS13555 +1.1 1.9 acyl-CoA dehydrogenase compare
BPHYT_RS07760 +1.1 2.4 diguanylate phosphodiesterase compare
BPHYT_RS07705 +1.1 2.4 arginine succinyltransferase compare
BPHYT_RS23880 +1.1 2.0 sugar ABC transporter permease compare
BPHYT_RS24580 +1.1 1.2 hypothetical protein compare
BPHYT_RS06190 +1.1 2.4 heptosyltransferase compare
BPHYT_RS30085 +1.1 1.8 hypothetical protein compare
BPHYT_RS28065 +1.1 1.3 hypothetical protein compare
BPHYT_RS08665 +1.0 1.2 hypothetical protein compare
BPHYT_RS09245 +1.0 2.5 ABC transporter ATP-binding protein compare
BPHYT_RS11685 +1.0 1.4 phasin family protein compare
BPHYT_RS08395 +1.0 1.3 DSBA oxidoreductase compare
BPHYT_RS31030 +1.0 2.5 tyrosine protein kinase compare
BPHYT_RS09690 +1.0 1.4 phosphate starvation-inducible protein PsiF compare
BPHYT_RS18820 +1.0 2.0 flagellar biosynthesis protein FliO compare
BPHYT_RS33990 +0.9 1.0 ATPase compare
BPHYT_RS12265 +0.9 1.7 alanine acetyltransferase compare
BPHYT_RS24255 +0.9 2.8 hypothetical protein compare
BPHYT_RS26040 +0.9 1.5 cysteine hydrolase compare
BPHYT_RS05290 +0.9 1.1 hypothetical protein compare
BPHYT_RS04015 +0.9 1.6 glycosyl transferase compare
BPHYT_RS11655 +0.9 1.6 chromosome partitioning protein ParB compare
BPHYT_RS09235 +0.9 2.1 hypothetical protein compare
BPHYT_RS27330 +0.9 1.3 hypothetical protein compare
BPHYT_RS01010 +0.9 2.4 hypothetical protein compare
BPHYT_RS30040 +0.9 1.5 hypothetical protein compare
BPHYT_RS32225 +0.9 1.8 hypothetical protein compare
BPHYT_RS10430 +0.9 1.4 glycosyl transferase family 1 compare
BPHYT_RS07300 +0.9 3.2 porin compare
BPHYT_RS07060 +0.9 1.9 aldo/keto reductase compare
BPHYT_RS09545 +0.9 1.5 peptide methionine sulfoxide reductase compare
BPHYT_RS01795 +0.8 4.1 histidine kinase compare
BPHYT_RS08825 +0.8 1.5 tartronate semialdehyde reductase compare
BPHYT_RS35345 +0.8 1.7 decarboxylase UbiD compare
BPHYT_RS36460 +0.8 1.8 hypothetical protein compare
BPHYT_RS00115 +0.8 1.2 acetaldehyde dehydrogenase compare
BPHYT_RS30590 +0.8 1.7 transcriptional regulator compare
BPHYT_RS33540 +0.8 1.4 hypothetical protein compare
BPHYT_RS29310 +0.8 2.3 oxidoreductase compare
BPHYT_RS36495 +0.8 1.3 peptidase compare
BPHYT_RS33385 +0.8 1.4 major facilitator superfamily protein compare
BPHYT_RS18910 +0.8 1.4 FlgN compare
BPHYT_RS29840 +0.8 1.2 polysaccharide biosynthesis protein compare
BPHYT_RS02435 +0.8 0.9 hypothetical protein compare
BPHYT_RS23525 +0.8 1.0 hypothetical protein compare
BPHYT_RS01790 +0.8 5.9 LuxR family transcriptional regulator compare
BPHYT_RS22000 +0.8 1.0 hypothetical protein compare
BPHYT_RS18935 +0.8 3.8 flagellar biosynthesis regulator FlhF compare
BPHYT_RS34155 +0.8 1.6 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS27305 +0.8 1.5 hypothetical protein compare
BPHYT_RS23830 +0.8 1.1 acetyl-CoA hydrolase compare
BPHYT_RS18780 +0.8 4.0 flagellar motor switch protein FliG compare
BPHYT_RS31060 +0.8 1.1 capsular polysaccharide biosynthesis protein compare
BPHYT_RS09600 +0.8 2.0 hypothetical protein compare
BPHYT_RS30815 +0.8 1.8 2-methylcitrate dehydratase compare
BPHYT_RS07480 +0.8 1.0 FAD-dependent oxidoreductase compare
BPHYT_RS13080 +0.8 0.9 hypothetical protein compare
BPHYT_RS12825 +0.8 1.9 phasin family protein compare
BPHYT_RS31900 +0.8 1.8 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS34490 +0.8 0.8 hypothetical protein compare
BPHYT_RS10470 +0.8 1.6 hypothetical protein compare
BPHYT_RS34995 +0.8 1.3 MFS transporter compare
BPHYT_RS33030 +0.8 0.6 hypothetical protein compare
BPHYT_RS30415 +0.8 1.5 AraC family transcriptional regulator compare
BPHYT_RS18775 +0.7 5.5 flagellar M-ring protein FliF compare
BPHYT_RS27155 +0.7 1.3 peroxiredoxin compare
BPHYT_RS11050 +0.7 1.1 molecular chaperone compare
BPHYT_RS35215 +0.7 1.0 dehydrogenase compare
BPHYT_RS35730 +0.7 1.6 hypothetical protein compare
BPHYT_RS10305 +0.7 1.2 hypothetical protein compare
BPHYT_RS18885 +0.7 4.0 flagellar basal body rod modification protein FlgD compare
BPHYT_RS36600 +0.7 1.6 lytic transglycosylase compare
BPHYT_RS24105 +0.7 1.1 chloroperoxidase compare
BPHYT_RS18945 +0.7 3.9 flagellar biosynthesis protein FlhB compare
BPHYT_RS18785 +0.7 1.4 flagellar assembly protein FliH compare
BPHYT_RS14255 +0.7 5.2 ABC transporter compare
BPHYT_RS30870 +0.7 2.0 chromate transporter compare
BPHYT_RS24175 +0.7 2.2 C4-dicarboxylate ABC transporter compare
BPHYT_RS36400 +0.7 0.8 hypothetical protein compare
BPHYT_RS30795 +0.7 1.0 short-chain dehydrogenase compare
BPHYT_RS24585 +0.7 1.4 NUDIX hydrolase compare
BPHYT_RS28350 +0.7 1.4 fatty acid desaturase compare
BPHYT_RS32395 +0.7 0.9 hypothetical protein compare
BPHYT_RS35770 +0.7 1.0 glyoxalase compare
BPHYT_RS29540 +0.7 1.0 aldolase compare
BPHYT_RS14250 +0.7 3.9 glycosyl transferase compare
BPHYT_RS34850 +0.7 1.8 acylphosphatase compare
BPHYT_RS30365 +0.7 0.7 beta-lactamase compare
BPHYT_RS17370 +0.7 2.6 membrane protein compare
BPHYT_RS28575 +0.7 0.9 transcriptional regulator compare
BPHYT_RS00370 +0.7 2.2 ABC transporter ATP-binding protein compare
BPHYT_RS32725 +0.7 2.1 cobalt transporter compare
BPHYT_RS04290 +0.7 0.8 glycosyl transferase family 2 compare
BPHYT_RS36220 +0.7 0.7 hypothetical protein compare
BPHYT_RS20545 +0.7 0.8 hypothetical protein compare
BPHYT_RS31515 +0.7 1.8 agmatinase compare
BPHYT_RS21780 +0.7 1.5 MFS transporter compare
BPHYT_RS25140 +0.7 1.2 hypothetical protein compare
BPHYT_RS01235 +0.7 1.5 hypothetical protein compare
BPHYT_RS11555 +0.7 1.4 allantoinase compare
BPHYT_RS29155 +0.7 2.5 hypothetical protein compare
BPHYT_RS26015 +0.7 1.8 rod shape-determining protein MreB compare
BPHYT_RS26470 +0.7 0.9 MFS transporter compare
BPHYT_RS28620 +0.7 1.3 enoyl-CoA hydratase compare
BPHYT_RS08170 +0.7 1.3 pilus assembly protein CpaB compare
BPHYT_RS15890 +0.7 1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS07675 +0.7 2.0 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS00770 +0.7 0.7 conjugal transfer protein TraC compare
BPHYT_RS04060 +0.7 1.1 glycosyl transferase compare
BPHYT_RS27270 +0.7 1.8 photosystem reaction center subunit H compare
BPHYT_RS18940 +0.7 4.2 flagellar biosynthesis protein FlhA compare
BPHYT_RS29710 +0.7 1.7 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS18790 +0.7 4.6 ATP synthase compare
BPHYT_RS16180 +0.7 0.6 TetR family transcriptional regulator compare
BPHYT_RS02185 +0.7 2.7 hypothetical protein compare
BPHYT_RS21615 +0.7 1.7 FMN-dependent NADH-azoreductase compare
BPHYT_RS16090 +0.7 1.1 hypothetical protein compare
BPHYT_RS30120 +0.7 1.6 heavy metal transporter compare
BPHYT_RS28965 +0.7 1.0 hypothetical protein compare
BPHYT_RS23325 +0.7 1.5 ribonuclease compare
BPHYT_RS08385 +0.7 0.9 secretion protein compare
BPHYT_RS23220 +0.7 1.4 hypothetical protein compare
BPHYT_RS34765 +0.6 1.7 chemotaxis protein compare
BPHYT_RS03945 +0.6 1.2 hypothetical protein compare
BPHYT_RS09185 +0.6 1.3 hypothetical protein compare
BPHYT_RS32055 +0.6 1.3 hypothetical protein compare
BPHYT_RS36360 +0.6 1.6 hypothetical protein compare
BPHYT_RS10740 +0.6 0.9 LuxR family transcriptional regulator compare
BPHYT_RS31635 +0.6 1.3 choline dehydrogenase compare
BPHYT_RS18805 +0.6 3.4 flagellar basal body protein FliL compare
BPHYT_RS10630 +0.6 2.1 oxidoreductase compare
BPHYT_RS10185 +0.6 1.6 MarR family transcriptional regulator compare
BPHYT_RS01340 +0.6 1.8 ChrB domain-containing protein compare
BPHYT_RS21595 +0.6 1.3 TetR family transcriptional regulator compare
BPHYT_RS22265 +0.6 0.7 hypothetical protein compare
BPHYT_RS19895 +0.6 1.2 rod shape-determining protein RodA compare
BPHYT_RS29110 +0.6 1.2 DNA-directed DNA polymerase compare
BPHYT_RS18830 +0.6 3.4 flagellar biosynthesis protein FliQ compare
BPHYT_RS34240 +0.6 0.8 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS34245 +0.6 2.0 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS36090 +0.6 0.9 hypothetical protein compare
BPHYT_RS14815 +0.6 1.7 methionine ABC transporter permease compare
BPHYT_RS20430 +0.6 1.2 3-dehydroquinate dehydratase compare
BPHYT_RS34085 +0.6 1.1 polyamine ABC transporter permease compare
BPHYT_RS06135 +0.6 1.8 hypothetical protein compare
BPHYT_RS14630 +0.6 2.4 MFS transporter compare
BPHYT_RS18860 +0.6 2.3 flagellar P-ring protein FlgI compare
BPHYT_RS28285 +0.6 0.9 MFS transporter compare
BPHYT_RS26950 +0.6 2.4 MFS transporter compare
BPHYT_RS31960 +0.6 1.6 hypothetical protein compare
BPHYT_RS31130 +0.6 1.6 hypothetical protein compare
BPHYT_RS29485 +0.6 1.2 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS29330 +0.6 1.5 acetyltransferase compare
BPHYT_RS03265 +0.6 1.4 hypothetical protein compare
BPHYT_RS05580 +0.6 1.5 hypothetical protein compare
BPHYT_RS33380 +0.6 1.6 2-nitropropane dioxygenase compare
BPHYT_RS31685 +0.6 1.1 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS08490 +0.6 1.6 Crp/Fnr family transcriptional regulator compare
BPHYT_RS29800 +0.6 1.4 hypothetical protein compare
BPHYT_RS05405 +0.6 0.9 GCN5 family acetyltransferase compare
BPHYT_RS18875 +0.6 2.8 flagellar basal body rod protein FlgF compare
BPHYT_RS18880 +0.6 4.3 flagellar hook protein FlgE compare
BPHYT_RS24285 +0.6 1.0 TetR family transcriptional regulator compare
BPHYT_RS12225 +0.6 2.7 carnitine dehydratase compare
BPHYT_RS26595 +0.6 1.8 carbonic anhydrase compare
BPHYT_RS32475 +0.6 0.8 dihydroxyacetone kinase compare
BPHYT_RS26465 +0.6 0.7 metallophosphoesterase compare
BPHYT_RS16055 +0.6 2.1 sugar ABC transporter permease compare
BPHYT_RS03995 +0.6 1.7 protein tyrosine kinase compare
BPHYT_RS18900 +0.6 4.2 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS07405 +0.6 1.1 UDP-glucose 4-epimerase compare
BPHYT_RS22555 +0.6 2.7 transcriptional regulator compare
BPHYT_RS36310 +0.6 2.1 hypothetical protein compare
BPHYT_RS18895 +0.6 2.3 flagellar basal body rod protein FlgB compare
BPHYT_RS25070 +0.6 0.8 choline ABC transporter permease compare
BPHYT_RS05255 +0.6 1.2 phage abortive infection protein compare
BPHYT_RS31855 +0.6 1.3 FAD-linked oxidase compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source L-Proline in Burkholderia phytofirmans PsJN

For nitrogen source L-Proline across organisms