Experiment set3IT062 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Chloramphenicol 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2823 -5.6 -7.7 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2753 -5.5 -5.4 HtrA protease/chaperone protein compare
Pf6N2E2_2129 -5.2 -6.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5527 -4.7 -4.6 Cold shock protein CspC compare
Pf6N2E2_3666 -4.5 -7.2 InaA protein compare
Pf6N2E2_2825 -4.5 -6.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2824 -4.0 -11.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3460 -3.7 -2.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -3.3 -6.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5178 -3.0 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3257 -2.8 -4.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3258 -2.7 -8.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2261 -2.5 -10.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_464 -2.4 -3.4 Sensory histidine kinase QseC compare
Pf6N2E2_5219 -2.4 -8.3 FIG140336: TPR domain protein compare
Pf6N2E2_4075 -2.3 -7.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3461 -2.3 -3.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5727 -2.2 -5.8 FIG00955360: hypothetical protein compare
Pf6N2E2_3260 -2.2 -4.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4416 -2.1 -3.1 Tyrosine recombinase XerC compare
Pf6N2E2_3835 -2.1 -4.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_463 -2.1 -7.7 Transcriptional regulatory protein RstA compare
Pf6N2E2_5944 -2.0 -5.0 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4187 -2.0 -6.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2217 -2.0 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4417 -1.9 -4.7 Protein of unknown function DUF484 compare
Pf6N2E2_3351 -1.8 -3.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2219 -1.7 -3.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5014 -1.7 -1.6 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2694 -1.6 -9.6 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) conserved
Pf6N2E2_4162 -1.6 -3.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3665 -1.6 -1.4 serine/threonine protein kinase compare
Pf6N2E2_3607 -1.6 -7.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2473 -1.5 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5006 -1.5 -8.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5430 -1.5 -8.1 Transglycosylase, Slt family compare
Pf6N2E2_5183 -1.5 -10.1 Paraquat-inducible protein B compare
Pf6N2E2_3060 -1.5 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_4362 -1.4 -2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_55 -1.4 -3.1 Probable hydrolase compare
Pf6N2E2_3270 -1.3 -3.9 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3040 -1.3 -5.4 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_6164 -1.3 -1.5 tRNA-Val-TAC compare
Pf6N2E2_5181 -1.3 -9.0 Paraquat-inducible protein A compare
Pf6N2E2_4072 -1.3 -4.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5987 -1.3 -5.6 OmpA family protein compare
Pf6N2E2_2827 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_5406 -1.2 -2.1 FIG00958224: hypothetical protein compare
Pf6N2E2_2973 -1.2 -3.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4206 -1.2 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5340 -1.2 -4.2 Stringent starvation protein A compare
Pf6N2E2_2218 -1.2 -4.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_6057 -1.2 -4.1 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5242 -1.2 -2.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2574 -1.2 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4153 -1.2 -1.8 Sensory box histidine kinase compare
Pf6N2E2_3039 -1.1 -5.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5819 -1.1 -6.3 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p conserved
Pf6N2E2_3504 -1.1 -8.0 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5610 -1.1 -4.5 two-component system sensor protein compare
Pf6N2E2_1660 -1.1 -2.9 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_4353 -1.1 -5.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2320 -1.1 -2.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2318 -1.1 -7.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5766 -1.1 -1.7 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_4204 -1.1 -1.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1932 -1.0 -3.9 Transcriptional regulator, IclR family compare
Pf6N2E2_1545 -1.0 -3.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_248 -1.0 -5.5 hypothetical protein compare
Pf6N2E2_5986 -1.0 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5182 -1.0 -5.6 Paraquat-inducible protein A compare
Pf6N2E2_3786 -1.0 -2.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_178 -1.0 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5093 -1.0 -8.2 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3108 -1.0 -3.4 FIG00953405: hypothetical protein compare
Pf6N2E2_3667 -1.0 -1.0 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5671 -0.9 -2.9 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4150 -0.9 -2.8 probable exported protein YPO0432 compare
Pf6N2E2_2340 -0.9 -3.7 Transcriptional regulator, GntR family compare
Pf6N2E2_1283 -0.9 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5845 -0.9 -4.3 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_3515 -0.9 -5.2 Probable transmembrane protein compare
Pf6N2E2_3856 -0.9 -5.0 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_4607 -0.9 -4.2 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_6058 -0.9 -4.8 FIG139976: hypothetical protein compare
Pf6N2E2_2552 -0.9 -3.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5337 -0.9 -3.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2010 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_5316 -0.8 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3062 -0.8 -3.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4369 -0.8 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1715 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5536 -0.8 -0.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5780 -0.8 -5.0 Periplasmic protease compare
Pf6N2E2_2274 -0.8 -4.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2935 -0.8 -5.6 NAD(FAD)-utilizing dehydrogenase, sll0175 homolog compare
Pf6N2E2_4147 -0.8 -5.2 Fused spore maturation proteins A and B compare
Pf6N2E2_622 -0.8 -3.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_620 -0.8 -4.7 BatD compare
Pf6N2E2_3876 -0.8 -3.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4155 -0.8 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2938 -0.8 -3.0 Outer membrane lipoprotein compare
Pf6N2E2_4611 -0.8 -3.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3516 -0.7 -2.1 Probable transmembrane protein compare
Pf6N2E2_3240 -0.7 -1.3 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2471 -0.7 -4.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2870 -0.7 -1.9 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_3833 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_3300 -0.7 -3.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5739 -0.7 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2488 -0.7 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2114 -0.7 -1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5338 -0.7 -4.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4886 -0.7 -5.4 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2474 -0.7 -5.4 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3753 -0.7 -5.9 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_5846 -0.7 -5.3 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_624 -0.7 -3.3 hypothetical protein PA3071 compare
Pf6N2E2_4174 -0.7 -5.2 Methionine ABC transporter substrate-binding protein compare
Pf6N2E2_4638 -0.7 -2.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1323 -0.7 -1.9 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1534 -0.7 -1.5 Probable transmembrane protein compare
Pf6N2E2_2313 -0.7 -1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3727 -0.7 -2.5 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_58 -0.7 -2.0 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_122 -0.7 -1.8 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_319 -0.7 -2.8 DUF1850 domain-containing protein compare
Pf6N2E2_3093 -0.7 -2.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2706 -0.7 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5419 -0.7 -3.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4803 -0.7 -0.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1113 -0.7 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3588 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5640 -0.7 -1.5 FIG00955597: hypothetical protein compare
Pf6N2E2_2756 -0.7 -3.5 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_621 -0.7 -4.4 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5898 -0.6 -2.6 Integral membrane protein compare
Pf6N2E2_869 -0.6 -2.5 FMN oxidoreductase compare
Pf6N2E2_3567 -0.6 -2.2 FIG00963947: hypothetical protein compare
Pf6N2E2_4494 -0.6 -2.3 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_5793 -0.6 -3.9 Aspartyl aminopeptidase compare
Pf6N2E2_2919 -0.6 -1.5 FIG00955830: hypothetical protein compare
Pf6N2E2_2317 -0.6 -2.4 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3834 -0.6 -2.2 Lipoprotein NlpD compare
Pf6N2E2_5156 -0.6 -1.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2388 -0.6 -2.6 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5810 -0.6 -1.5 Homoserine/homoserine lactone efflux protein compare
Pf6N2E2_1870 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_2103 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_3810 -0.6 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5633 -0.6 -5.1 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2311 -0.6 -3.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5679 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_5133 -0.6 -2.2 FIG00953980: hypothetical protein compare
Pf6N2E2_2750 -0.6 -3.4 Putative permease PerM (= YfgO) compare
Pf6N2E2_3264 -0.6 -1.9 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4136 -0.6 -3.2 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_1352 -0.6 -1.9 Cation transport ATPase compare
Pf6N2E2_1875 -0.6 -2.1 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2646 -0.6 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2752 -0.6 -3.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2386 -0.6 -2.6 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_2472 -0.6 -2.9 hypothetical protein compare
Pf6N2E2_5339 -0.6 -3.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3386 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_4372 -0.6 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_2325 -0.6 -2.9 Recombination protein RecR compare
Pf6N2E2_5919 -0.6 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_5428 -0.6 -3.1 DNA recombination and repair protein RecO compare
Pf6N2E2_5534 -0.6 -2.4 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4074 -0.6 -4.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_799 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_922 -0.5 -1.7 FIG00794167: hypothetical protein compare
Pf6N2E2_5841 -0.5 -0.9 GlcG protein compare
Pf6N2E2_3279 -0.5 -2.7 FIG138315: Putative alpha helix protein compare
Pf6N2E2_647 -0.5 -1.9 General secretion pathway protein G compare
Pf6N2E2_1740 -0.5 -2.4 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_384 -0.5 -1.0 Glycine cleavage system transcriptional activator compare
Pf6N2E2_847 -0.5 -1.9 Phosphoribosyl transferase domain protein compare
Pf6N2E2_5483 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_2007 -0.5 -1.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_447 -0.5 -2.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_5321 -0.5 -3.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1055 -0.5 -3.7 Transcriptional regulator MexT compare
Pf6N2E2_1014 -0.5 -2.0 Nitrate/nitrite transporter compare
Pf6N2E2_2842 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_855 -0.5 -1.0 Transcriptional regulator, IclR family compare
Pf6N2E2_2310 -0.5 -3.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1385 -0.5 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_3723 -0.5 -1.9 FIG022199: FAD-binding protein compare
Pf6N2E2_2469 -0.5 -2.4 hypothetical protein compare
Pf6N2E2_290 -0.5 -2.0 Cold shock protein CspD compare
Pf6N2E2_6140 -0.5 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3613 -0.5 -3.2 GTP-binding protein HflX compare
Pf6N2E2_2755 -0.5 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5622 -0.5 -0.8 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_5605 -0.5 -1.8 FxsA protein compare
Pf6N2E2_30 -0.5 -2.3 Antisigma transmembrane sensor FpvR compare
Pf6N2E2_4169 -0.5 -3.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2940 -0.5 -2.6 OmpA family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Chloramphenicol in Pseudomonas fluorescens FW300-N2E2

For stress Chloramphenicol across organisms