Experiment set3IT062 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Chloramphenicol 0.002 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3659 +3.6 15.5 Protein fixF compare
Pf6N2E2_3663 +3.2 22.3 Glycosyl transferase compare
Pf6N2E2_1056 +3.2 3.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2509 +2.6 4.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3661 +2.6 11.7 hypothetical protein compare
Pf6N2E2_2507 +2.3 15.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2510 +2.1 13.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3658 +2.1 16.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2508 +2.0 8.6 hypothetical protein compare
Pf6N2E2_2506 +1.8 15.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3198 +1.8 6.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1298 +1.8 3.2 Xanthine transporter,putative compare
Pf6N2E2_2822 +1.7 8.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_5647 +1.7 13.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2513 +1.7 10.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4601 +1.6 7.7 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_945 +1.6 5.4 Transcriptional regulator, TetR family compare
Pf6N2E2_773 +1.5 11.9 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_3199 +1.5 10.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4974 +1.5 9.5 DedA protein compare
Pf6N2E2_3655 +1.5 12.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5150 +1.4 8.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4057 +1.4 2.4 lipoprotein, putative compare
Pf6N2E2_2518 +1.3 2.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3791 +1.3 10.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_445 +1.2 7.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2264 +1.2 3.7 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4994 +1.2 6.3 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_3664 +1.1 5.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5525 +1.1 9.3 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Pf6N2E2_3656 +1.1 7.8 Probable transcription regulator Mig-14 compare
Pf6N2E2_37 +1.1 4.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3792 +1.1 6.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_5545 +1.1 6.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_2425 +1.1 5.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5546 +1.1 7.5 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_4454 +1.0 7.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4414 +1.0 4.5 FIG00953808: hypothetical protein compare
Pf6N2E2_2526 +1.0 6.3 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4047 +1.0 5.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4451 +0.9 5.2 FIG139438: lipoprotein B compare
Pf6N2E2_4654 +0.9 3.6 hypothetical protein compare
Pf6N2E2_4048 +0.9 5.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5481 +0.9 3.1 Transcriptional regulator, AraC family compare
Pf6N2E2_2872 +0.9 6.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_5733 +0.9 4.0 NLP/P60 family protein compare
Pf6N2E2_2675 +0.9 2.0 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_145 +0.8 6.8 putative exported protein compare
Pf6N2E2_144 +0.8 7.7 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4984 +0.8 4.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5927 +0.8 4.3 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_3261 +0.8 2.4 hypothetical protein compare
Pf6N2E2_446 +0.8 5.5 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_4612 +0.8 4.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_946 +0.8 3.0 Transcriptional regulator, LysR family compare
Pf6N2E2_1983 +0.8 3.3 hypothetical protein compare
Pf6N2E2_3885 +0.8 1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_6081 +0.8 3.1 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_1040 +0.7 1.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4148 +0.7 5.4 Glutamate-aspartate carrier protein compare
Pf6N2E2_5425 +0.7 0.8 hypothetical protein compare
Pf6N2E2_586 +0.7 5.0 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_3908 +0.7 4.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5943 +0.7 2.3 hypothetical protein compare
Pf6N2E2_4556 +0.7 3.4 FIG00953078: hypothetical protein compare
Pf6N2E2_5928 +0.7 5.4 ABC-type multidrug transport system, permease component compare
Pf6N2E2_942 +0.7 1.2 Mll6465 protein compare
Pf6N2E2_5084 +0.7 5.2 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2223 +0.7 3.0 hypothetical protein compare
Pf6N2E2_4499 +0.7 2.5 protein of unknown function DUF86 compare
Pf6N2E2_2593 +0.7 3.4 Flagellar M-ring protein FliF compare
Pf6N2E2_719 +0.6 2.3 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_3096 +0.6 1.3 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3844 +0.6 2.2 hypothetical protein compare
Pf6N2E2_1665 +0.6 3.4 hypothetical protein compare
Pf6N2E2_2578 +0.6 1.8 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2885 +0.6 3.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5574 +0.6 4.9 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_724 +0.6 1.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4579 +0.6 2.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_434 +0.6 2.0 hypothetical protein compare
Pf6N2E2_5694 +0.6 3.6 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2582 +0.6 2.8 Flagellar motor switch protein FliN compare
Pf6N2E2_600 +0.6 2.1 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_2967 +0.6 1.3 Cold shock protein CspA compare
Pf6N2E2_1676 +0.6 1.8 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_28 +0.6 1.4 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_4841 +0.6 3.8 Biotin operon repressor / Biotin-protein ligase (EC 6.3.4.15) compare
Pf6N2E2_2597 +0.6 4.9 Flagellar regulatory protein FleQ compare
Pf6N2E2_924 +0.6 1.6 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_3320 +0.6 2.4 hypothetical protein compare
Pf6N2E2_3134 +0.6 0.9 hypothetical protein compare
Pf6N2E2_6090 +0.6 1.7 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_4615 +0.6 1.9 type IV pili signal transduction protein PilI compare
Pf6N2E2_3847 +0.6 2.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3130 +0.6 3.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_3325 +0.6 2.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_5613 +0.6 1.1 FIG00953674: hypothetical protein compare
Pf6N2E2_4618 +0.6 2.9 Chemotaxis signal transduction protein compare
Pf6N2E2_2088 +0.6 1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_4063 +0.5 2.7 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_4477 +0.5 2.6 Z-ring-associated protein ZapA compare
Pf6N2E2_5088 +0.5 1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_971 +0.5 1.9 hypothetical protein compare
Pf6N2E2_2281 +0.5 1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3606 +0.5 3.7 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf6N2E2_746 +0.5 1.6 FIG00958097: hypothetical protein compare
Pf6N2E2_2886 +0.5 4.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1424 +0.5 1.6 transcriptional regulator, TetR family compare
Pf6N2E2_3546 +0.5 1.8 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_4809 +0.5 4.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2864 +0.5 1.4 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1248 +0.5 1.4 MutT/nudix family protein compare
Pf6N2E2_5237 +0.5 1.5 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2253 +0.5 2.9 hypothetical protein compare
Pf6N2E2_1625 +0.5 1.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5030 +0.5 3.3 Transcriptional regulator, AsnC family compare
Pf6N2E2_405 +0.5 1.3 hypothetical protein compare
Pf6N2E2_2402 +0.5 1.8 hypothetical protein compare
Pf6N2E2_3672 +0.5 3.5 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf6N2E2_5575 +0.5 3.0 Glycerol uptake facilitator protein compare
Pf6N2E2_5816 +0.5 0.6 Smr domain protein compare
Pf6N2E2_3349 +0.5 2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3338 +0.5 1.5 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_1299 +0.5 1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_3763 +0.5 1.4 hypothetical protein compare
Pf6N2E2_4810 +0.5 3.3 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5052 +0.5 1.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_5740 +0.5 3.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_1548 +0.5 2.0 Lactoylglutathione lyase compare
Pf6N2E2_3812 +0.5 1.9 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2579 +0.5 3.4 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4120 +0.5 3.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_4272 +0.5 1.6 putative membrane protein compare
Pf6N2E2_689 +0.5 1.4 FIG00956189: hypothetical protein compare
Pf6N2E2_3620 +0.4 3.4 Epoxyqueuosine (oQ) reductase QueG compare
Pf6N2E2_1182 +0.4 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_3055 +0.4 1.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2634 +0.4 3.5 Potassium uptake protein TrkH compare
Pf6N2E2_4418 +0.4 0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_775 +0.4 2.2 FIG00955061: hypothetical protein compare
Pf6N2E2_2514 +0.4 1.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2624 +0.4 3.3 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_3429 +0.4 1.3 hypothetical protein compare
Pf6N2E2_3830 +0.4 1.9 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2013 +0.4 0.9 hypothetical protein compare
Pf6N2E2_5232 +0.4 3.1 Cell division inhibitor compare
Pf6N2E2_2589 +0.4 2.0 Flagellar protein FliJ compare
Pf6N2E2_2734 +0.4 2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_5480 +0.4 3.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_3687 +0.4 1.8 FIG00959437: hypothetical protein compare
Pf6N2E2_238 +0.4 1.3 hypothetical protein compare
Pf6N2E2_2583 +0.4 2.3 Flagellar motor switch protein FliM compare
Pf6N2E2_361 +0.4 1.5 Peptide ABC transporter, permease protein compare
Pf6N2E2_5024 +0.4 2.1 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_2375 +0.4 1.9 Response regulator NasT compare
Pf6N2E2_3899 +0.4 3.0 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_3509 +0.4 2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3179 +0.4 1.8 FIG021952: putative membrane protein compare
Pf6N2E2_571 +0.4 2.2 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3720 +0.4 1.3 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3326 +0.4 0.8 hypothetical protein compare
Pf6N2E2_619 +0.4 1.7 Exonuclease SbcD compare
Pf6N2E2_1774 +0.4 1.4 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4635 +0.4 2.9 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_2156 +0.4 1.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_229 +0.4 1.3 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_2605 +0.4 2.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4173 +0.4 1.5 Methionine ABC transporter permease protein compare
Pf6N2E2_5342 +0.4 1.4 21 kDa hemolysin precursor compare
Pf6N2E2_4838 +0.4 3.6 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_766 +0.4 2.2 Fap protein with C39 domain compare
Pf6N2E2_4427 +0.4 1.1 FIG00954215: hypothetical protein compare
Pf6N2E2_2288 +0.4 1.3 FIG00953423: hypothetical protein compare
Pf6N2E2_1836 +0.4 2.3 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_4673 +0.4 1.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_2858 +0.4 2.5 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_5168 +0.4 1.9 Regulator of competence-specific genes compare
Pf6N2E2_3248 +0.4 1.5 Probable transmembrane protein compare
Pf6N2E2_98 +0.4 0.9 putative transmembrane protein compare
Pf6N2E2_669 +0.4 1.5 Nuclease inhibitor compare
Pf6N2E2_3443 +0.4 2.6 Sulfate permease compare
Pf6N2E2_2148 +0.4 2.0 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2861 +0.4 1.5 hypothetical protein compare
Pf6N2E2_1674 +0.4 2.7 Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) compare
Pf6N2E2_5499 +0.4 0.7 hypothetical protein compare
Pf6N2E2_1757 +0.4 2.5 glutamine ABC transporter ATP-binding component compare
Pf6N2E2_3794 +0.4 2.3 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_1761 +0.4 1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_5906 +0.4 1.6 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_3826 +0.4 1.9 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4895 +0.4 2.2 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_926 +0.4 2.5 NADH dehydrogenase (EC 1.6.99.3) compare
Pf6N2E2_4889 +0.4 2.1 Putative transport protein compare
Pf6N2E2_1147 +0.4 0.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_1346 +0.4 2.4 FIG002994: Putative transcriptional regulator compare
Pf6N2E2_3829 +0.4 2.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_127 +0.4 0.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_638 +0.4 1.6 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5734 +0.4 2.6 NLP/P60 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Chloramphenicol in Pseudomonas fluorescens FW300-N2E2

For stress Chloramphenicol across organisms