Experiment set3IT062 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium Chloride 500 mM

200 most important genes:

  gene name fitness t score description  
AO353_06455 -4.3 -3.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_03360 -3.8 -8.8 glucose-6-phosphate dehydrogenase compare
AO353_10930 -3.6 -7.3 DNA polymerase I compare
AO353_00310 -3.0 -9.7 transaldolase compare
AO353_22685 -3.0 -3.5 peroxidase compare
AO353_05425 -3.0 -6.8 glycine/betaine ABC transporter permease conserved
AO353_13100 -2.7 -2.6 GTPase RsgA compare
AO353_07810 -2.7 -15.0 choline dehydrogenase conserved
AO353_05430 -2.7 -12.9 glycine/betaine ABC transporter substrate-binding protein conserved
AO353_14370 -2.7 -8.8 glucose-6-phosphate isomerase compare
AO353_07805 -2.6 -10.8 betaine-aldehyde dehydrogenase compare
AO353_01410 -2.6 -4.9 ribonuclease E compare
AO353_07140 -2.6 -17.4 peptidase M23 compare
AO353_05240 -2.5 -3.2 rod shape-determining protein MreD compare
AO353_06415 -2.5 -5.8 hypothetical protein compare
AO353_12930 -2.3 -4.5 GlcNAc-PI de-N-acetylase compare
AO353_02000 -2.3 -4.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_11730 -2.3 -9.2 glutamate--cysteine ligase compare
AO353_05440 -2.2 -10.1 glycine/betaine ABC transporter ATP-binding protein conserved
AO353_06040 -2.2 -4.3 exodeoxyribonuclease V subunit alpha compare
AO353_00825 -2.2 -3.7 porin compare
AO353_07515 -2.2 -3.2 transporter compare
AO353_10455 -2.1 -2.8 tRNA modification GTPase MnmE compare
AO353_03710 -2.1 -3.7 formyltetrahydrofolate deformylase compare
AO353_18540 -2.1 -2.8 pseudouridine synthase compare
AO353_13140 -2.1 -6.6 tRNA dimethylallyltransferase compare
AO353_05435 -2.1 -8.4 choline ABC transporter permease conserved
AO353_08005 -2.0 -5.4 thioesterase compare
AO353_09320 -2.0 -9.6 ATP-dependent DNA helicase RecG compare
AO353_03590 -2.0 -4.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_13155 -2.0 -4.8 hypothetical protein compare
AO353_13200 -2.0 -11.6 exoribonuclease R compare
AO353_10430 -2.0 -4.6 chromosome partitioning protein ParB compare
AO353_02945 -1.9 -7.7 magnesium transporter compare
AO353_14400 -1.9 -4.8 Fis family transcriptional regulator compare
AO353_03580 -1.9 -4.2 ATP-dependent DNA helicase RuvB compare
AO353_09240 -1.9 -3.9 acetylglutamate kinase compare
AO353_01975 -1.9 -6.9 glycosyl transferase compare
AO353_09720 -1.8 -2.7 hypothetical protein compare
AO353_19360 -1.8 -3.1 peroxiredoxin compare
AO353_00750 -1.8 -3.5 GntR family transcriptional regulator compare
AO353_08880 -1.8 -3.5 exopolyphosphatase compare
AO353_09915 -1.8 -8.5 long-chain acyl-CoA thioester hydrolase compare
AO353_01990 -1.8 -7.0 UDP-N-acetylglucosamine 2-epimerase compare
AO353_12500 -1.7 -2.3 shikimate kinase compare
AO353_16805 -1.7 -6.1 recombinase RecA compare
AO353_00460 -1.7 -3.2 TetR family transcriptional regulator compare
AO353_09315 -1.7 -8.8 LysR family transcriptional regulator compare
AO353_16495 -1.7 -6.2 zinc metallopeptidase RseP compare
AO353_13160 -1.7 -2.9 membrane protease HflC compare
AO353_28425 -1.7 -4.1 TetR family transcriptional regulator compare
AO353_09135 -1.7 -2.1 cytochrome C compare
AO353_10055 -1.6 -10.2 DNA helicase II compare
AO353_04190 -1.6 -2.7 glycerol-3-phosphate dehydrogenase compare
AO353_07325 -1.6 -2.3 diadenosine tetraphosphatase compare
AO353_08110 -1.6 -6.5 glutathione synthetase compare
AO353_07315 -1.6 -2.1 rRNA methyltransferase compare
AO353_12935 -1.6 -4.5 glycosyltransferase compare
AO353_05690 -1.5 -3.8 SsrA-binding protein compare
AO353_06045 -1.5 -6.7 exodeoxyribonuclease V subunit beta compare
AO353_06050 -1.5 -6.3 exodeoxyribonuclease V subunit gamma compare
AO353_26830 -1.5 -4.2 histidine kinase compare
AO353_12915 -1.5 -7.2 carbamoyltransferase compare
AO353_08980 -1.5 -3.0 heme biosynthesis operon protein HemX compare
AO353_12940 -1.5 -7.2 glycosyl transferase compare
AO353_16940 -1.4 -5.2 deoxycytidine triphosphate deaminase compare
AO353_12950 -1.4 -8.0 polymerase compare
AO353_24130 -1.4 -2.9 hypothetical protein compare
AO353_04520 -1.4 -5.0 elongation factor 4 compare
AO353_20170 -1.4 -4.5 trigger factor compare
AO353_00515 -1.4 -2.4 hypothetical protein compare
AO353_14740 -1.4 -3.5 GTP-binding protein compare
AO353_22800 -1.4 -3.4 sulfite reductase compare
AO353_19145 -1.4 -3.9 protease HtpX compare
AO353_15905 -1.4 -5.9 outer membrane protein assembly factor BamB compare
AO353_08245 -1.4 -2.9 cell division ATP-binding protein FtsE compare
AO353_17885 -1.3 -2.2 hypothetical protein compare
AO353_09250 -1.3 -2.7 exodeoxyribonuclease III compare
AO353_09000 -1.3 -4.8 argininosuccinate lyase compare
AO353_20565 -1.3 -1.9 tRNA-Ala compare
AO353_17435 -1.3 -4.4 hypothetical protein compare
AO353_14940 -1.3 -3.7 malate:quinone oxidoreductase compare
AO353_13130 -1.3 -2.5 N-acetylmuramoyl-L-alanine amidase compare
AO353_08470 -1.3 -3.9 RNA pyrophosphohydrolase compare
AO353_02020 -1.3 -4.1 hypothetical protein compare
AO353_07155 -1.2 -5.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04365 -1.2 -4.0 recombinase XerD compare
AO353_02690 -1.2 -6.7 dehydrogenase compare
AO353_04490 -1.2 -7.2 murein transglycosylase compare
AO353_00835 -1.2 -5.3 transporter compare
AO353_03615 -1.2 -2.6 cold-shock protein compare
AO353_11690 -1.2 -8.2 choline transporter conserved
AO353_17445 -1.2 -3.0 hypothetical protein compare
AO353_02250 -1.2 -2.8 chorismate synthase compare
AO353_08350 -1.2 -5.4 hypothetical protein compare
AO353_01995 -1.2 -8.0 hypothetical protein compare
AO353_13640 -1.2 -3.5 histidine kinase compare
AO353_14395 -1.1 -3.8 poly(A) polymerase compare
AO353_28320 -1.1 -2.9 aminopeptidase compare
AO353_21640 -1.1 -2.4 cobalt transporter compare
AO353_01985 -1.1 -6.2 hypothetical protein compare
AO353_21625 -1.1 -2.0 Fe/S biogenesis protein NfuA compare
AO353_20175 -1.1 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_20095 -1.1 -4.3 histidine kinase compare
AO353_08015 -1.1 -5.4 5,10-methylenetetrahydrofolate reductase compare
AO353_20510 -1.1 -1.4 amidase compare
AO353_02010 -1.1 -3.6 glycosyl transferase family 1 compare
AO353_06325 -1.0 -3.2 hypothetical protein compare
AO353_15170 -1.0 -3.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_20185 -1.0 -4.3 DNA-binding protein compare
AO353_09030 -1.0 -1.0 iron donor protein CyaY compare
AO353_11485 -1.0 -3.2 hypothetical protein compare
AO353_27650 -1.0 -3.2 cell division protein FtsK compare
AO353_17675 -1.0 -3.1 hypothetical protein compare
AO353_04355 -1.0 -2.0 homoserine dehydrogenase compare
AO353_08685 -1.0 -4.9 N-acetylglutamate synthase compare
AO353_03420 -1.0 -3.5 phosphogluconate dehydratase compare
AO353_09950 -1.0 -4.0 aspartate ammonia-lyase compare
AO353_15250 -1.0 -2.7 cytochrome B compare
AO353_17625 -1.0 -5.5 RNA polymerase subunit sigma compare
AO353_27720 -1.0 -2.6 cupin compare
AO353_09945 -1.0 -3.5 LysR family transcriptional regulator compare
AO353_11770 -1.0 -2.0 molecular chaperone Hsp33 compare
AO353_15385 -1.0 -2.5 hypothetical protein compare
AO353_12690 -1.0 -0.9 acyl carrier protein compare
AO353_02025 -1.0 -6.0 mannose-1-phosphate guanyltransferase compare
AO353_14475 -0.9 -7.8 penicillin-binding protein 1B compare
AO353_09890 -0.9 -3.5 phosphate ABC transporter ATP-binding protein compare
AO353_01345 -0.9 -6.6 aminodeoxychorismate lyase compare
AO353_15465 -0.9 -4.0 cytochrome C oxidase compare
AO353_13205 -0.9 -4.1 23S rRNA methyltransferase compare
AO353_06335 -0.9 -7.7 AMP nucleosidase compare
AO353_09275 -0.9 -2.6 DNA-directed RNA polymerase subunit omega compare
AO353_06720 -0.9 -1.8 NrdR family transcriptional regulator compare
AO353_15830 -0.9 -1.4 transcriptional regulator compare
AO353_21290 -0.9 -2.3 hypothetical protein compare
AO353_29145 -0.9 -3.3 HxlR family transcriptional regulator compare
AO353_13980 -0.9 -3.6 DNA repair protein RadA compare
AO353_00170 -0.9 -2.1 lysozyme compare
AO353_08875 -0.9 -1.9 amino acid ABC transporter ATP-binding protein compare
AO353_10440 -0.9 -3.7 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08115 -0.9 -3.8 energy transducer TonB compare
AO353_11850 -0.9 -3.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_26180 -0.9 -2.9 phage tail protein compare
AO353_18480 -0.9 -6.7 potassium transporter TrkH compare
AO353_23720 -0.9 -2.6 BatB protein compare
AO353_26965 -0.9 -4.7 alkyl hydroperoxide reductase compare
AO353_04500 -0.9 -1.7 DNA repair protein RecO compare
AO353_02015 -0.9 -4.2 acetyltransferase compare
AO353_08265 -0.9 -3.4 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_13720 -0.9 -6.4 arginine decarboxylase compare
AO353_01220 -0.9 -1.7 hypothetical protein compare
AO353_18285 -0.9 -1.5 3-phosphoglycerate kinase compare
AO353_14150 -0.9 -1.3 peptidylprolyl isomerase compare
AO353_05625 -0.9 -1.4 transcription elongation factor GreA compare
AO353_07355 -0.9 -3.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03585 -0.8 -1.8 ATP-dependent DNA helicase RuvA compare
AO353_03045 -0.8 -5.8 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) compare
AO353_10990 -0.8 -4.5 glutamate:protein symporter compare
AO353_10445 -0.8 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_03520 -0.8 -2.1 hypothetical protein compare
AO353_10945 -0.8 -2.2 cytochrome C compare
AO353_17305 -0.8 -3.9 TetR family transcriptional regulator compare
AO353_07900 -0.8 -2.0 hypothetical protein compare
AO353_06465 -0.8 -3.7 lytic transglycosylase compare
AO353_09235 -0.8 -3.9 phosphoglucomutase compare
AO353_27855 -0.8 -1.8 MarR family transcriptional regulator compare
AO353_19435 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_03715 -0.8 -1.4 H-NS histone compare
AO353_15460 -0.8 -4.2 cytochrome o ubiquinol oxidase subunit III compare
AO353_08240 -0.8 -6.3 cell division protein FtsX compare
AO353_19310 -0.8 -1.6 enoyl-CoA hydratase compare
AO353_29340 -0.8 -1.4 transporter compare
AO353_09260 -0.8 -3.6 ribonuclease PH compare
AO353_00105 -0.8 -1.3 hypothetical protein compare
AO353_03815 -0.8 -1.1 heme utilization protein compare
AO353_15470 -0.8 -5.9 protoheme IX farnesyltransferase compare
AO353_10985 -0.8 -1.4 hypothetical protein compare
AO353_10625 -0.8 -5.7 potassium transporter peripheral membrane component compare
AO353_11480 -0.8 -2.8 hypothetical protein compare
AO353_26045 -0.8 -1.6 hypothetical protein compare
AO353_10670 -0.8 -3.5 shikimate dehydrogenase compare
AO353_17785 -0.8 -2.2 hypothetical protein compare
AO353_20785 -0.8 -2.9 carbon storage regulator CsrA compare
AO353_12420 -0.8 -2.0 predicted FeS cluster maintenance protein (from data) compare
AO353_25815 -0.8 -2.5 hypothetical protein compare
AO353_05150 -0.8 -2.7 ABC transporter ATP-binding protein compare
AO353_19565 -0.7 -1.9 vanillate O-demethylase oxidoreductase VanB compare
AO353_20700 -0.7 -3.0 oxidoreductase compare
AO353_07795 -0.7 -5.0 beta-aspartyl peptidase compare
AO353_11165 -0.7 -4.5 hypothetical protein compare
AO353_04220 -0.7 -3.1 chemotaxis protein CheY compare
AO353_12115 -0.7 -1.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08170 -0.7 -2.5 hypothetical protein compare
AO353_02810 -0.7 -4.0 histidine kinase compare
AO353_02195 -0.7 -2.6 spermidine synthase compare
AO353_09460 -0.7 -2.8 hypothetical protein compare
AO353_28725 -0.7 -1.9 hypothetical protein compare
AO353_01980 -0.7 -4.9 NAD-dependent dehydratase compare
AO353_09895 -0.7 -4.2 phosphate ABC transporter permease compare


Specific Phenotypes

For 7 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E3

For stress Sodium Chloride across organisms