Experiment set3IT062 for Acidovorax sp. GW101-3H11

Compare to:

LB with Chloramphenicol 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_4450 +7.1 17.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Ac3H11_441 +1.6 12.2 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) conserved
Ac3H11_1175 +1.5 1.8 hypothetical protein compare
Ac3H11_703 +1.3 2.2 FIG00538730: hypothetical protein compare
Ac3H11_4641 +1.2 6.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_1873 +1.1 1.6 hypothetical protein compare
Ac3H11_1649 +1.0 2.4 hypothetical protein compare
Ac3H11_4310 +1.0 1.3 FIG00458971: hypothetical protein compare
Ac3H11_3587 +1.0 1.8 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Ac3H11_1321 +0.9 2.4 isochorismatase hydrolase compare
Ac3H11_4196 +0.9 1.5 metal dependent phosphohydrolase compare
Ac3H11_3354 +0.9 1.9 Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) compare
Ac3H11_4216 +0.9 2.3 hypothetical protein compare
Ac3H11_162 +0.9 1.1 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_2393 +0.9 1.3 hypothetical protein compare
Ac3H11_4232 +0.9 1.9 Outer membrane protein romA compare
Ac3H11_4185 +0.8 0.8 hypothetical protein compare
Ac3H11_4142 +0.8 1.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Ac3H11_1000 +0.8 1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ac3H11_1771 +0.8 1.5 tRNA nucleotidyltransferase, A-adding (EC 2.7.7.25) compare
Ac3H11_3781 +0.8 1.2 hypothetical protein compare
Ac3H11_1791 +0.7 0.9 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) compare
Ac3H11_4251 +0.7 1.2 FIG00347912: hypothetical protein compare
Ac3H11_2198 +0.7 2.0 hypothetical protein compare
Ac3H11_3599 +0.7 1.8 Response regulator compare
Ac3H11_1210 +0.7 4.5 transcriptional regulator, TetR family compare
Ac3H11_3266 +0.7 1.2 3-demethylubiquinone-9 3-methyltransferase compare
Ac3H11_2934 +0.7 2.6 D-2-hydroxyglutarate dehydrogenase compare
Ac3H11_4905 +0.7 1.8 hypothetical protein compare
Ac3H11_2412 +0.7 1.8 hypothetical protein compare
Ac3H11_3238 +0.7 0.8 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Ac3H11_3538 +0.7 1.2 hypothetical protein compare
Ac3H11_4983 +0.7 1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_688 +0.7 2.2 Biopolymer transport protein ExbD/TolR compare
Ac3H11_1335 +0.6 1.9 hypothetical protein compare
Ac3H11_4718 +0.6 2.8 Methionine ABC transporter ATP-binding protein compare
Ac3H11_2899 +0.6 2.1 Probable LysR-family transcriptional regulator compare
Ac3H11_3471 +0.6 1.5 hypothetical protein compare
Ac3H11_1142 +0.6 0.8 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Ac3H11_1283 +0.6 1.7 Malic enzyme compare
Ac3H11_2121 +0.6 1.4 putative c'cytochrome compare
Ac3H11_2583 +0.6 1.1 Na(+) H(+) antiporter subunit C compare
Ac3H11_3614 +0.6 2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Ac3H11_4549 +0.6 1.0 Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) compare
Ac3H11_3420 +0.6 1.7 Glyoxalase family protein compare
Ac3H11_351 +0.6 0.8 hypothetical protein compare
Ac3H11_2194 +0.6 1.9 putative exported protein compare
Ac3H11_4965 +0.6 2.5 RNA polymerase ECF-type sigma factor compare
Ac3H11_1174 +0.6 1.0 Transcriptional regulator, GntR family compare
Ac3H11_484 +0.6 1.9 Molybdopterin biosynthesis protein MoeA compare
Ac3H11_3590 +0.6 0.9 Carbon monoxide dehydrogenase small chain (EC 1.2.99.2) compare
Ac3H11_4719 +0.6 4.1 ABC-type multidrug transport system, permease component compare
Ac3H11_1749 +0.6 1.8 hypothetical protein compare
Ac3H11_543 +0.6 1.7 hypothetical protein compare
Ac3H11_1034 +0.5 1.7 Nitrite-sensitive transcriptional repressor NsrR compare
Ac3H11_142 +0.5 1.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_4899 +0.5 2.8 ABC transporter ATP-binding protein compare
Ac3H11_3950 +0.5 1.6 Catalase (EC 1.11.1.6) compare
Ac3H11_1326 +0.5 2.5 Plasmid replication/partition related protein compare
Ac3H11_3237 +0.5 2.8 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Ac3H11_4877 +0.5 3.2 hypothetical protein compare
Ac3H11_473 +0.5 2.3 Recombination protein RecR compare
Ac3H11_242 +0.5 0.7 Mobile element protein compare
Ac3H11_1475 +0.5 1.3 Molybdenum cofactor biosynthesis protein MoaE compare
Ac3H11_2035 +0.5 0.6 General secretion pathway protein J compare
Ac3H11_1089 +0.5 1.7 hypothetical protein compare
Ac3H11_1610 +0.5 2.4 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Ac3H11_2890 +0.5 1.7 Thioredoxin-like protein clustered with PA0057 compare
Ac3H11_1784 +0.5 1.4 5-nucleotidase SurE (EC 3.1.3.5) compare
Ac3H11_3765 +0.5 0.8 Transcriptional regulator, IclR family compare
Ac3H11_152 +0.5 0.7 hypothetical protein compare
Ac3H11_3233 +0.5 0.9 hypothetical protein compare
Ac3H11_3343 +0.5 1.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Ac3H11_2904 +0.5 1.7 hypothetical protein compare
Ac3H11_4916 +0.5 1.4 Transcriptional regulator, ArsR family compare
Ac3H11_2960 +0.5 0.7 Nicotinamide-nucleotide adenylyltransferase, NadM family (EC 2.7.7.1) / ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Ac3H11_111 +0.5 1.7 hypothetical protein compare
Ac3H11_3469 +0.5 1.2 hypothetical protein compare
Ac3H11_501 +0.5 2.6 ABC-type multidrug transport system, permease component compare
Ac3H11_3760 +0.5 2.0 hypothetical protein compare
Ac3H11_2537 +0.5 2.9 Cell division protein BolA compare
Ac3H11_2383 +0.5 1.9 Ferric siderophore transport system, biopolymer transport protein ExbB compare
Ac3H11_3164 +0.5 2.8 S-formylglutathione hydrolase (EC 3.1.2.12) compare
Ac3H11_4574 +0.5 1.7 hypothetical protein compare
Ac3H11_4720 +0.5 1.8 YrbA protein compare
Ac3H11_631 +0.5 0.8 Methionine ABC transporter ATP-binding protein compare
Ac3H11_1270 +0.4 2.7 Transcriptional regulator, AraC family compare
Ac3H11_4672 +0.4 1.6 Ankyrin compare
Ac3H11_1453 +0.4 1.3 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
Ac3H11_89 +0.4 1.0 hypothetical protein compare
Ac3H11_2797 +0.4 1.1 helix-turn-helix domain protein compare
Ac3H11_410 +0.4 2.2 hypothetical protein compare
Ac3H11_4385 +0.4 1.5 hypothetical protein compare
Ac3H11_1261 +0.4 2.2 Sensory histidine kinase QseC compare
Ac3H11_1265 +0.4 1.7 FIG00931207: hypothetical protein compare
Ac3H11_727 +0.4 3.4 RNA polymerase sigma-54 factor RpoN compare
Ac3H11_4125 +0.4 1.5 FIG000605: protein co-occurring with transport systems (COG1739) compare
Ac3H11_4119 +0.4 2.2 Integral membrane protein compare
Ac3H11_926 +0.4 1.3 Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-) compare
Ac3H11_3647 +0.4 1.0 Serine acetyltransferase (EC 2.3.1.30) compare
Ac3H11_2898 +0.4 1.7 Protein of unknown function DUF1446 compare
Ac3H11_536 +0.4 1.2 Peptide deformylase (EC 3.5.1.88) compare
Ac3H11_540 +0.4 1.6 Membrane protein, putative compare
Ac3H11_3519 +0.4 0.8 hypothetical protein compare
Ac3H11_4895 +0.4 2.3 hypothetical protein compare
Ac3H11_1986 +0.4 2.3 Maleate cis-trans isomerase (EC 5.2.1.1) compare
Ac3H11_2804 +0.4 0.8 IncF plasmid conjugative transfer pilus assembly protein TraE compare
Ac3H11_4893 +0.4 1.8 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
Ac3H11_4528 +0.4 1.5 Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase compare
Ac3H11_637 +0.4 1.9 protein of unknown function DUF1566 compare
Ac3H11_2556 +0.4 1.2 Transcriptional regulator, IclR family compare
Ac3H11_4311 +0.4 1.5 ABC-type dipeptide transport system, periplasmic component compare
Ac3H11_3733 +0.4 2.4 cytidine/deoxycytidylate deaminase family protein compare
Ac3H11_1302 +0.4 1.4 Pirin, N-terminal:Pirin, C-terminal compare
Ac3H11_3782 +0.4 1.4 hypothetical protein compare
Ac3H11_4176 +0.4 1.1 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
Ac3H11_1728 +0.4 1.6 hypothetical protein compare
Ac3H11_2174 +0.4 2.6 Multimeric flavodoxin WrbA compare
Ac3H11_3141 +0.4 1.3 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Ac3H11_3276 +0.4 1.9 hypothetical protein compare
Ac3H11_3199 +0.4 1.6 Periplasmic binding protein compare
Ac3H11_4552 +0.4 1.5 HD phosphohydrolase-like protein compare
Ac3H11_4207 +0.4 1.6 Flagellar hook-basal body complex protein FliE compare
Ac3H11_3859 +0.4 2.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Ac3H11_1653 +0.4 2.1 hypothetical protein compare
Ac3H11_1278 +0.4 0.8 Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72) compare
Ac3H11_3404 +0.4 0.7 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
Ac3H11_2903 +0.4 1.9 hypothetical protein compare
Ac3H11_607 +0.4 1.5 Predicted L-arabinose ABC transport system, ATP-binding protein compare
Ac3H11_349 +0.4 0.7 hypothetical protein compare
Ac3H11_3345 +0.4 2.0 hypothetical protein compare
Ac3H11_3490 +0.4 1.6 hypothetical protein compare
Ac3H11_529 +0.4 1.9 hypothetical protein compare
Ac3H11_330 +0.4 1.0 hypothetical protein compare
Ac3H11_2268 +0.4 1.6 hypothetical protein compare
Ac3H11_2719 +0.4 1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_4864 +0.4 0.8 hypothetical protein compare
Ac3H11_3610 +0.4 1.5 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Ac3H11_2438 +0.4 1.1 hypothetical protein compare
Ac3H11_68 +0.4 1.4 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_867 +0.4 1.1 hypothetical protein compare
Ac3H11_952 +0.4 0.6 Cytochrome c551/c552 compare
Ac3H11_2285 +0.4 1.1 Transcriptional regulator, AsnC family compare
Ac3H11_3583 +0.4 0.7 hypothetical protein compare
Ac3H11_3034 +0.3 2.2 Fructokinase (EC 2.7.1.4) (from data) compare
Ac3H11_4538 +0.3 0.9 ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) compare
Ac3H11_1487 +0.3 2.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) compare
Ac3H11_774 +0.3 0.8 Transcriptional regulator, LysR family compare
Ac3H11_2821 +0.3 1.5 hypothetical protein compare
Ac3H11_3858 +0.3 2.5 Glutaredoxin 3 (Grx3) compare
Ac3H11_4198 +0.3 0.8 hypothetical protein compare
Ac3H11_1585 +0.3 1.7 Tetrapyrrole methylase family protein compare
Ac3H11_1181 +0.3 1.9 Transcriptional regulator ligR, LysR family compare
Ac3H11_3038 +0.3 1.1 L-fucose mutarotase compare
Ac3H11_2696 +0.3 1.4 hypothetical protein compare
Ac3H11_1524 +0.3 1.7 Transcriptional regulator compare
Ac3H11_777 +0.3 1.0 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Ac3H11_2389 +0.3 1.4 hypothetical protein compare
Ac3H11_1509 +0.3 2.4 membrane protein, putative compare
Ac3H11_4622 +0.3 1.7 Steroid delta-isomerase domain protein compare
Ac3H11_2189 +0.3 2.9 hypothetical protein compare
Ac3H11_1152 +0.3 1.1 hypothetical protein compare
Ac3H11_3979 +0.3 1.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Ac3H11_499 +0.3 1.9 FIG00822594: hypothetical protein compare
Ac3H11_3203 +0.3 1.7 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-) compare
Ac3H11_4506 +0.3 0.9 Transcriptional regulator, IclR family compare
Ac3H11_1304 +0.3 1.5 hypothetical protein compare
Ac3H11_1041 +0.3 1.4 hypothetical protein compare
Ac3H11_3606 +0.3 1.0 Mlr1171 protein compare
Ac3H11_4818 +0.3 1.2 Phosphoglycerate mutase (EC 5.4.2.1) compare
Ac3H11_4853 +0.3 2.0 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Ac3H11_4167 +0.3 1.2 hypothetical protein compare
Ac3H11_1317 +0.3 1.1 Permeases of the major facilitator superfamily compare
Ac3H11_1496 +0.3 2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Ac3H11_4158 +0.3 1.6 putative membrane protein compare
Ac3H11_2157 +0.3 1.2 hypothetical protein compare
Ac3H11_3907 +0.3 0.7 hypothetical protein compare
Ac3H11_699 +0.3 1.9 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein compare
Ac3H11_4579 +0.3 1.5 Chromate transport protein ChrA compare
Ac3H11_3012 +0.3 2.3 dienelactone hydrolase compare
Ac3H11_4362 +0.3 1.5 hypothetical protein compare
Ac3H11_635 +0.3 0.8 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Ac3H11_4243 +0.3 1.8 FIG003003: hypothetical protein compare
Ac3H11_2073 +0.3 1.1 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
Ac3H11_3708 +0.3 1.1 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Ac3H11_3707 +0.3 1.4 Membrane-associated phospholipid phosphatase (EC 3.1.3.27) compare
Ac3H11_3976 +0.3 1.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Ac3H11_3963 +0.3 1.1 FIG01121071: hypothetical protein compare
Ac3H11_589 +0.3 1.3 NnrS protein involved in response to NO compare
Ac3H11_3250 +0.3 1.9 Transcriptional regulator, LysR family compare
Ac3H11_4304 +0.3 0.9 Rhodanese-like domain protein compare
Ac3H11_2653 +0.3 1.1 Cys-tRNA(Pro) deacylase YbaK compare
Ac3H11_4320 +0.3 1.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Ac3H11_2786 +0.3 1.7 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Ac3H11_3939 +0.3 0.7 Inner membrane protein YqiK compare
Ac3H11_2041 +0.3 1.3 Cobalamin synthase compare
Ac3H11_3594 +0.3 1.2 carbon monoxide dehydrogenase E protein compare
Ac3H11_2211 +0.3 1.1 hypothetical protein compare
Ac3H11_3088 +0.3 1.0 hypothetical protein compare
Ac3H11_2171 +0.3 0.5 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare


Specific Phenotypes

For 5 genes in this experiment

For stress Chloramphenicol in Acidovorax sp. GW101-3H11

For stress Chloramphenicol across organisms