Experiment set3IT061 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Rifampicin 0.003 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -5.4 -3.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2129 -4.1 -4.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1136 -3.6 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3039 -3.5 -7.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3834 -3.4 -7.9 Lipoprotein NlpD compare
Pf6N2E2_3060 -3.4 -2.4 Outer membrane protein H precursor compare
Pf6N2E2_3835 -3.3 -5.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2574 -3.3 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_3516 -3.1 -2.2 Probable transmembrane protein compare
Pf6N2E2_5727 -3.1 -7.3 FIG00955360: hypothetical protein compare
Pf6N2E2_4362 -3.0 -3.8 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5544 -3.0 -8.6 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4414 -3.0 -4.0 FIG00953808: hypothetical protein compare
Pf6N2E2_4417 -2.9 -4.9 Protein of unknown function DUF484 compare
Pf6N2E2_4886 -2.8 -10.3 Catalase (EC 1.11.1.6) compare
Pf6N2E2_43 -2.7 -5.2 Histidine permease YuiF compare
Pf6N2E2_4584 -2.7 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3351 -2.7 -4.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3062 -2.7 -4.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5534 -2.6 -5.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4353 -2.6 -4.1 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2752 -2.6 -7.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2447 -2.6 -4.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_75 -2.6 -4.0 Colicin V production protein compare
Pf6N2E2_3753 -2.6 -12.5 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4369 -2.6 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_624 -2.6 -5.5 hypothetical protein PA3071 compare
Pf6N2E2_622 -2.5 -3.3 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5986 -2.5 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5527 -2.4 -2.4 Cold shock protein CspC compare
Pf6N2E2_4352 -2.4 -3.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3040 -2.4 -6.6 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3074 -2.3 -2.1 FIG00960973: hypothetical protein compare
Pf6N2E2_5340 -2.3 -3.6 Stringent starvation protein A compare
Pf6N2E2_4075 -2.3 -5.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5219 -2.3 -7.3 FIG140336: TPR domain protein compare
Pf6N2E2_2474 -2.3 -8.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_4072 -2.3 -4.6 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2181 -2.3 -2.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4585 -2.3 -10.0 Cell division protein FtsX compare
Pf6N2E2_4453 -2.3 -12.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5430 -2.2 -7.9 Transglycosylase, Slt family compare
Pf6N2E2_2973 -2.2 -4.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4416 -2.2 -3.0 Tyrosine recombinase XerC compare
Pf6N2E2_6164 -2.2 -1.4 tRNA-Val-TAC compare
Pf6N2E2_2572 -2.2 -3.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3617 -2.2 -4.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4999 -2.1 -6.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3666 -2.1 -3.3 InaA protein compare
Pf6N2E2_248 -2.1 -6.6 hypothetical protein compare
Pf6N2E2_5633 -2.1 -11.4 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2753 -2.0 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_3515 -2.0 -5.6 Probable transmembrane protein compare
Pf6N2E2_4074 -2.0 -10.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_620 -1.9 -6.5 BatD compare
Pf6N2E2_621 -1.9 -4.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_813 -1.9 -3.5 Response regulator compare
Pf6N2E2_2219 -1.9 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4155 -1.8 -7.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5780 -1.8 -6.9 Periplasmic protease compare
Pf6N2E2_3833 -1.8 -3.7 hypothetical protein compare
Pf6N2E2_5419 -1.8 -2.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_1656 -1.8 -1.8 hypothetical protein compare
Pf6N2E2_2938 -1.8 -4.3 Outer membrane lipoprotein compare
Pf6N2E2_3637 -1.7 -8.4 yqiA-like hydrolase, affects the cell envelope (from data) conserved
Pf6N2E2_3667 -1.7 -1.7 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5714 -1.7 -1.7 Flavoprotein WrbA compare
Pf6N2E2_2746 -1.7 -4.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5987 -1.7 -3.9 OmpA family protein compare
Pf6N2E2_1848 -1.7 -3.2 hypothetical protein compare
Pf6N2E2_4187 -1.7 -3.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5342 -1.6 -2.9 21 kDa hemolysin precursor compare
Pf6N2E2_2217 -1.6 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2279 -1.6 -2.3 FIG00954981: hypothetical protein compare
Pf6N2E2_623 -1.6 -1.2 FIG00954674: hypothetical protein compare
Pf6N2E2_2605 -1.6 -4.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_144 -1.6 -9.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4169 -1.5 -5.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) conserved
Pf6N2E2_2642 -1.5 -6.5 putative patatin-like phospholipase compare
Pf6N2E2_1774 -1.5 -1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2218 -1.5 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_145 -1.5 -7.3 putative exported protein compare
Pf6N2E2_3373 -1.5 -3.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5499 -1.5 -1.2 hypothetical protein compare
Pf6N2E2_5245 -1.5 -5.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3460 -1.4 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_463 -1.4 -4.4 Transcriptional regulatory protein RstA compare
Pf6N2E2_4611 -1.4 -2.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4591 -1.4 -3.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_1694 -1.4 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_3875 -1.4 -1.5 FIG00953324: hypothetical protein compare
Pf6N2E2_2225 -1.4 -2.5 FIG00953489: hypothetical protein compare
Pf6N2E2_4206 -1.4 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2845 -1.4 -5.8 RNA polymerase associated protein RapA (EC 3.6.1.-) conserved
Pf6N2E2_5846 -1.4 -7.4 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_2258 -1.4 -5.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3258 -1.3 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3466 -1.3 -2.2 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_2967 -1.3 -1.6 Cold shock protein CspA compare
Pf6N2E2_3642 -1.3 -3.4 lipoprotein, putative compare
Pf6N2E2_3568 -1.3 -1.5 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_625 -1.3 -3.8 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4150 -1.3 -2.4 probable exported protein YPO0432 compare
Pf6N2E2_2469 -1.2 -3.3 hypothetical protein compare
Pf6N2E2_1391 -1.2 -2.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3856 -1.2 -3.8 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_4147 -1.2 -5.8 Fused spore maturation proteins A and B compare
Pf6N2E2_6100 -1.2 -1.6 tRNA-Val-TAC compare
Pf6N2E2_3514 -1.2 -1.9 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1860 -1.2 -2.5 Ferredoxin, 2Fe-2S compare
Pf6N2E2_3271 -1.2 -1.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1603 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_5006 -1.2 -2.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5841 -1.2 -1.1 GlcG protein compare
Pf6N2E2_1405 -1.2 -2.3 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf6N2E2_2940 -1.2 -2.6 OmpA family protein compare
Pf6N2E2_451 -1.1 -2.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_474 -1.1 -2.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_2693 -1.1 -0.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2261 -1.1 -3.9 VacJ-like lipoprotein precursor compare
Pf6N2E2_234 -1.1 -1.8 FIG00454312: hypothetical protein compare
Pf6N2E2_1182 -1.1 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_2025 -1.1 -4.6 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2756 -1.1 -3.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_1776 -1.1 -0.8 Chemotaxis protein CheD compare
Pf6N2E2_3504 -1.1 -5.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_737 -1.1 -1.3 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_5961 -1.1 -4.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3206 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_2381 -1.0 -2.7 Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5748 -1.0 -2.2 Transcriptional activator protein LuxR compare
Pf6N2E2_5845 -1.0 -3.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_3027 -1.0 -1.2 Baseplate assembly protein V compare
Pf6N2E2_3665 -1.0 -0.8 serine/threonine protein kinase compare
Pf6N2E2_4145 -1.0 -2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_4160 -1.0 -1.0 Cytochrome c5 compare
Pf6N2E2_478 -1.0 -2.0 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_440 -1.0 -1.6 FIG00954920: hypothetical protein compare
Pf6N2E2_98 -1.0 -1.4 putative transmembrane protein compare
Pf6N2E2_5133 -1.0 -1.3 FIG00953980: hypothetical protein compare
Pf6N2E2_2438 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_5862 -1.0 -1.2 Lipoprotein, putative compare
Pf6N2E2_3870 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_962 -1.0 -1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5555 -1.0 -0.8 Cold shock protein CspA compare
Pf6N2E2_799 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_2128 -1.0 -3.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1113 -1.0 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_5974 -1.0 -2.7 Uncharacterized glutathione S-transferase-like protein compare
Pf6N2E2_5733 -1.0 -2.6 NLP/P60 family protein compare
Pf6N2E2_5510 -1.0 -1.6 FIG00955324: hypothetical protein compare
Pf6N2E2_754 -1.0 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_1293 -0.9 -1.6 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_237 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_5130 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3638 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_5084 -0.9 -5.4 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2699 -0.9 -3.8 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_1279 -0.9 -1.8 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_4969 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_5605 -0.9 -2.2 FxsA protein compare
Pf6N2E2_1636 -0.9 -4.0 Ferrichrome-iron receptor compare
Pf6N2E2_494 -0.9 -1.9 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_2835 -0.9 -1.8 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2284 -0.9 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_3226 -0.9 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_896 -0.9 -2.4 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_2493 -0.9 -3.1 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf6N2E2_5049 -0.9 -1.4 acetyltransferase, GNAT family compare
Pf6N2E2_1705 -0.9 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4263 -0.9 -2.3 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2471 -0.9 -3.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4548 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_1596 -0.9 -1.0 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_55 -0.9 -1.8 Probable hydrolase compare
Pf6N2E2_4764 -0.9 -2.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4365 -0.9 -3.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_5632 -0.9 -1.6 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2041 -0.9 -2.6 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_6085 -0.9 -1.5 Aha1 domain superfamily compare
Pf6N2E2_4647 -0.9 -5.1 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_3546 -0.9 -1.7 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_1916 -0.9 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_2325 -0.9 -2.3 Recombination protein RecR compare
Pf6N2E2_529 -0.9 -2.6 FIG00954439: hypothetical protein compare
Pf6N2E2_2788 -0.8 -1.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_2934 -0.8 -1.9 lipoprotein, putative compare
Pf6N2E2_3003 -0.8 -1.8 Bacteriophage protein GP46 compare
Pf6N2E2_3901 -0.8 -2.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_3260 -0.8 -2.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_1859 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_5625 -0.8 -3.1 COG0613, Predicted metal-dependent phosphoesterases (PHP family) compare
Pf6N2E2_1281 -0.8 -1.6 ATPase involved in DNA repair compare
Pf6N2E2_384 -0.8 -1.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_1545 -0.8 -2.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5261 -0.8 -0.8 FIG00956983: hypothetical protein compare
Pf6N2E2_649 -0.8 -1.1 General secretion pathway protein L compare
Pf6N2E2_5255 -0.8 -4.1 Outer membrane stress sensor protease DegS compare
Pf6N2E2_6044 -0.8 -3.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_1758 -0.8 -0.9 Transcriptional regulator, MarR family compare


Specific Phenotypes

For 14 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N2E2

For stress Rifampicin across organisms