Experiment set3IT061 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Polymyxin B sulfate 4 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26835 -4.3 -4.2 transcriptional regulator compare
AO353_14990 -4.1 -4.0 hypothetical protein compare
AO353_17050 -4.0 -6.7 hypothetical protein compare
AO353_26845 -3.9 -12.2 acriflavine resistance protein B compare
AO353_05225 -3.9 -19.7 hypothetical protein compare
AO353_17645 -3.8 -11.7 peptidase M48 compare
AO353_15900 -3.7 -3.6 GTP-binding protein compare
AO353_17290 -3.4 -6.8 multidrug transporter compare
AO353_05625 -3.4 -3.2 transcription elongation factor GreA compare
AO353_12940 -3.3 -10.4 glycosyl transferase compare
AO353_25550 -3.3 -8.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_26840 -3.2 -4.8 RND transporter compare
AO353_15065 -3.2 -6.1 XRE family transcriptional regulator compare
AO353_06585 -3.0 -7.9 hypothetical protein compare
AO353_17675 -3.0 -6.0 hypothetical protein compare
AO353_03590 -2.9 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_15060 -2.8 -15.9 histidine kinase compare
AO353_04020 -2.8 -9.3 XRE family transcriptional regulator compare
AO353_06415 -2.8 -6.0 hypothetical protein compare
AO353_06040 -2.7 -4.5 exodeoxyribonuclease V subunit alpha compare
AO353_12935 -2.7 -5.1 glycosyltransferase compare
AO353_15905 -2.7 -7.8 outer membrane protein assembly factor BamB compare
AO353_17295 -2.7 -17.5 multidrug transporter compare
AO353_22685 -2.6 -3.6 peroxidase compare
AO353_15070 -2.6 -11.9 hypothetical protein compare
AO353_09240 -2.6 -3.5 acetylglutamate kinase compare
AO353_09890 -2.6 -6.7 phosphate ABC transporter ATP-binding protein compare
AO353_12950 -2.5 -10.7 polymerase compare
AO353_05840 -2.5 -14.4 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_09275 -2.5 -4.6 DNA-directed RNA polymerase subunit omega compare
AO353_00515 -2.4 -4.5 hypothetical protein compare
AO353_02660 -2.4 -5.9 peptidase P60 compare
AO353_09235 -2.4 -7.6 phosphoglucomutase compare
AO353_03585 -2.3 -3.9 ATP-dependent DNA helicase RuvA compare
AO353_02015 -2.3 -7.7 acetyltransferase compare
AO353_20200 -2.3 -5.3 peptidylprolyl isomerase compare
AO353_01995 -2.3 -11.7 hypothetical protein compare
AO353_01990 -2.3 -6.9 UDP-N-acetylglucosamine 2-epimerase compare
AO353_16495 -2.2 -7.2 zinc metallopeptidase RseP compare
AO353_10950 -2.2 -11.2 thiol:disulfide interchange protein compare
AO353_13100 -2.2 -2.5 GTPase RsgA compare
AO353_17625 -2.2 -9.9 RNA polymerase subunit sigma compare
AO353_08350 -2.2 -8.8 hypothetical protein compare
AO353_04035 -2.2 -5.1 exclusion suppressor FxsA compare
AO353_09720 -2.1 -2.4 hypothetical protein compare
AO353_03580 -2.1 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_12650 -2.0 -2.0 hypothetical protein compare
AO353_09050 -2.0 -4.4 recombinase XerC compare
AO353_25505 -2.0 -9.7 4-amino-4-deoxy-L-arabinose transferase compare
AO353_06045 -2.0 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_02010 -2.0 -6.3 glycosyl transferase family 1 compare
AO353_02025 -2.0 -9.5 mannose-1-phosphate guanyltransferase compare
AO353_02440 -1.9 -10.6 peptidase S41 compare
AO353_09250 -1.9 -3.5 exodeoxyribonuclease III compare
AO353_17300 -1.9 -7.1 antibiotic transporter compare
AO353_28110 -1.9 -4.9 TetR family transcriptional regulator compare
AO353_12930 -1.8 -4.2 GlcNAc-PI de-N-acetylase compare
AO353_02000 -1.8 -4.2 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_07355 -1.8 -6.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03545 -1.8 -7.2 hypothetical protein compare
AO353_17640 -1.8 -2.8 serine peptidase compare
AO353_01970 -1.7 -9.0 hypothetical protein compare
AO353_01975 -1.7 -6.3 glycosyl transferase compare
AO353_01985 -1.7 -8.0 hypothetical protein compare
AO353_02690 -1.7 -8.5 dehydrogenase compare
AO353_17035 -1.7 -5.0 hypothetical protein compare
AO353_06050 -1.6 -6.5 exodeoxyribonuclease V subunit gamma compare
AO353_12420 -1.6 -3.9 predicted FeS cluster maintenance protein (from data) compare
AO353_10670 -1.6 -5.9 shikimate dehydrogenase compare
AO353_02250 -1.6 -3.4 chorismate synthase compare
AO353_13395 -1.5 -2.9 protein hupE compare
AO353_27695 -1.5 -6.9 isocitrate dehydrogenase compare
AO353_00825 -1.5 -3.6 porin compare
AO353_13640 -1.5 -4.6 histidine kinase compare
AO353_09060 -1.5 -3.3 hypothetical protein compare
AO353_09915 -1.4 -6.5 long-chain acyl-CoA thioester hydrolase compare
AO353_12500 -1.4 -2.1 shikimate kinase compare
AO353_25500 -1.4 -5.1 phosphoglycerate mutase compare
AO353_01915 -1.4 -1.7 GlcG protein compare
AO353_22965 -1.4 -6.6 ATPase conserved
AO353_04190 -1.4 -2.3 glycerol-3-phosphate dehydrogenase compare
AO353_08170 -1.4 -4.2 hypothetical protein compare
AO353_14420 -1.3 -3.4 molecular chaperone DnaK compare
AO353_16940 -1.3 -4.6 deoxycytidine triphosphate deaminase compare
AO353_26100 -1.3 -2.3 lysozyme compare
AO353_08115 -1.3 -4.9 energy transducer TonB compare
AO353_04360 -1.3 -6.5 protein-disulfide isomerase compare
AO353_25530 -1.3 -3.8 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_06495 -1.3 -4.5 gamma-glutamyl phosphate reductase compare
AO353_09540 -1.3 -5.3 type VI secretion system protein ImpM compare
AO353_27500 -1.2 -2.2 hypothetical protein compare
AO353_20185 -1.2 -4.7 DNA-binding protein compare
AO353_16805 -1.2 -4.6 recombinase RecA compare
AO353_25570 -1.2 -7.2 glycosyltransferase compare
AO353_00430 -1.2 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_16825 -1.2 -4.3 hypothetical protein compare
AO353_03795 -1.2 -3.7 fumarate hydratase compare
AO353_11750 -1.2 -2.3 ATPase compare
AO353_17945 -1.2 -2.1 cyclic nucleotide-binding protein compare
AO353_02145 -1.2 -4.6 hypothetical protein compare
AO353_02070 -1.2 -5.0 prephenate dehydratase compare
AO353_22800 -1.1 -2.8 sulfite reductase compare
AO353_05465 -1.1 -8.3 flavodoxin compare
AO353_08165 -1.1 -2.6 pyrroline-5-carboxylate reductase compare
AO353_09000 -1.1 -3.9 argininosuccinate lyase compare
AO353_25320 -1.1 -2.9 phosphoribosyl-dephospho-CoA transferase compare
AO353_04565 -1.1 -4.3 nucleoid-associated protein compare
AO353_08685 -1.1 -5.6 N-acetylglutamate synthase compare
AO353_10430 -1.1 -3.0 chromosome partitioning protein ParB compare
AO353_23405 -1.1 -1.6 hypothetical protein compare
AO353_26870 -1.1 -2.8 AP endonuclease compare
AO353_07155 -1.1 -4.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_01980 -1.1 -7.0 NAD-dependent dehydratase compare
AO353_03815 -1.1 -1.6 heme utilization protein compare
AO353_10055 -1.0 -7.1 DNA helicase II compare
AO353_09905 -1.0 -5.7 phosphate-binding protein compare
AO353_02810 -1.0 -4.7 histidine kinase compare
AO353_13160 -1.0 -1.9 membrane protease HflC compare
AO353_02815 -1.0 -3.7 transcriptional regulator compare
AO353_03420 -1.0 -3.4 phosphogluconate dehydratase compare
AO353_10930 -1.0 -5.4 DNA polymerase I compare
AO353_08265 -1.0 -3.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_23400 -1.0 -2.1 hypothetical protein compare
AO353_07935 -1.0 -3.6 hypothetical protein compare
AO353_08620 -1.0 -2.0 hypothetical protein compare
AO353_00660 -1.0 -2.3 transcriptional regulator compare
AO353_24745 -1.0 -2.2 hypothetical protein compare
AO353_28555 -1.0 -2.0 LysR family transcriptional regulator compare
AO353_07925 -0.9 -5.8 beta-hydroxylase compare
AO353_05010 -0.9 -1.6 HopJ type III effector protein compare
AO353_00455 -0.9 -2.5 beta-hexosaminidase compare
AO353_24990 -0.9 -2.8 translation elongation factor compare
AO353_15170 -0.9 -2.6 cytochrome D ubiquinol oxidase subunit III compare
AO353_05135 -0.9 -5.1 toluene tolerance protein compare
AO353_02020 -0.9 -2.9 hypothetical protein compare
AO353_09900 -0.9 -5.5 phosphate ABC transporter permease compare
AO353_25465 -0.9 -5.5 histidine kinase compare
AO353_10455 -0.9 -1.6 tRNA modification GTPase MnmE compare
AO353_25990 -0.9 -3.6 aspartyl beta-hydroxylase compare
AO353_25925 -0.9 -1.5 hypothetical protein compare
AO353_20170 -0.9 -2.8 trigger factor compare
AO353_10435 -0.9 -5.3 chromosome partitioning protein compare
AO353_17475 -0.9 -3.5 hypothetical protein compare
AO353_15395 -0.9 -2.7 transcriptional regulator compare
AO353_17070 -0.9 -4.8 hypothetical protein compare
AO353_05880 -0.8 -1.9 plasmid stabilization protein compare
AO353_17885 -0.8 -1.6 hypothetical protein compare
AO353_15280 -0.8 -2.9 hypothetical protein compare
AO353_02520 -0.8 -1.7 sodium transporter compare
AO353_20270 -0.8 -1.7 spore coat protein compare
AO353_03710 -0.8 -2.1 formyltetrahydrofolate deformylase compare
AO353_12105 -0.8 -3.6 peptidase S41 compare
AO353_18715 -0.8 -1.3 histidine kinase compare
AO353_27990 -0.8 -3.0 amino acid transporter compare
AO353_13140 -0.8 -3.4 tRNA dimethylallyltransferase compare
AO353_00760 -0.8 -1.8 hypothetical protein compare
AO353_02480 -0.8 -4.4 peptidylprolyl isomerase compare
AO353_27650 -0.8 -2.6 cell division protein FtsK compare
AO353_02255 -0.8 -3.8 alpha/beta hydrolase compare
AO353_13130 -0.8 -1.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_03275 -0.8 -1.7 LysR family transcriptional regulator compare
AO353_09315 -0.8 -4.7 LysR family transcriptional regulator compare
AO353_12790 -0.8 -0.9 hypothetical protein compare
AO353_27860 -0.8 -4.1 hypothetical protein compare
AO353_27090 -0.8 -1.6 hypothetical protein compare
AO353_09320 -0.8 -4.2 ATP-dependent DNA helicase RecG compare
AO353_25260 -0.8 -2.3 hypothetical protein compare
AO353_04355 -0.8 -1.4 homoserine dehydrogenase compare
AO353_27865 -0.8 -5.1 hypothetical protein compare
AO353_13155 -0.8 -2.4 hypothetical protein compare
AO353_07140 -0.8 -6.5 peptidase M23 compare
AO353_23485 -0.8 -4.7 lytic transglycosylase compare
AO353_11730 -0.7 -4.6 glutamate--cysteine ligase compare
AO353_13020 -0.7 -5.0 hypothetical protein compare
AO353_12710 -0.7 -1.2 thioredoxin compare
AO353_07325 -0.7 -1.3 diadenosine tetraphosphatase compare
AO353_00510 -0.7 -3.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_09040 -0.7 -1.2 diaminopimelate epimerase compare
AO353_12915 -0.7 -3.6 carbamoyltransferase compare
AO353_09875 -0.7 -1.1 hypothetical protein compare
AO353_10985 -0.7 -2.1 hypothetical protein compare
AO353_17935 -0.7 -1.9 hypothetical protein compare
AO353_04015 -0.7 -4.0 histidine kinase compare
AO353_04175 -0.7 -2.4 glycerol uptake facilitator GlpF compare
AO353_22500 -0.7 -0.8 hypothetical protein compare
AO353_03100 -0.7 -1.5 XRE family transcriptional regulator compare
AO353_18500 -0.7 -1.3 chemotaxis protein CheY compare
AO353_23350 -0.7 -1.3 hypothetical protein compare
AO353_11770 -0.7 -1.2 molecular chaperone Hsp33 compare
AO353_01000 -0.7 -3.2 hypothetical protein compare
AO353_27130 -0.7 -1.0 hypothetical protein compare
AO353_03670 -0.7 -2.5 ornithine acetyltransferase compare
AO353_19530 -0.7 -0.8 quinohemoprotein amine dehydrogenase compare
AO353_08975 -0.7 -3.0 heme biosynthesis protein HemY compare
AO353_06455 -0.7 -1.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_04220 -0.7 -3.1 chemotaxis protein CheY compare
AO353_26465 -0.7 -2.3 hypothetical protein compare
AO353_25870 -0.7 -2.0 peptide ABC transporter ATP-binding protein compare
AO353_02275 -0.7 -2.6 hypothetical protein compare
AO353_20565 -0.7 -1.2 tRNA-Ala compare


Specific Phenotypes

For 9 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas fluorescens FW300-N2E3

For stress Polymyxin B sulfate across organisms