Experiment set3IT061 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Polymyxin B sulfate 4 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_26830 +1.5 7.1 histidine kinase compare
AO353_18170 +1.2 7.8 aspartyl beta-hydroxylase compare
AO353_02280 +1.1 2.6 DNA mismatch repair protein MutS compare
AO353_00495 +1.1 3.2 DNA topoisomerase I compare
AO353_01190 +0.9 2.4 hypothetical protein compare
AO353_21830 +0.9 7.3 chemotaxis protein CheY compare
AO353_21620 +0.9 7.5 peptidylprolyl isomerase compare
AO353_27155 +0.9 2.0 hypothetical protein compare
AO353_20660 +0.9 4.2 pseudouridine synthase compare
AO353_25220 +0.8 2.5 hypothetical protein compare
AO353_06345 +0.8 7.5 histidine kinase compare
AO353_02735 +0.8 7.0 chemotaxis protein CheY compare
AO353_26390 +0.8 2.4 glyoxalase compare
AO353_03840 +0.8 2.4 ABC transporter ATP-binding protein compare
AO353_08130 +0.8 2.3 uracil phosphoribosyltransferase compare
AO353_01685 +0.8 1.6 hypothetical protein compare
AO353_19310 +0.7 2.2 enoyl-CoA hydratase compare
AO353_04930 +0.7 2.2 flavodoxin compare
AO353_09530 +0.7 6.2 serine/threonine protein kinase compare
AO353_08765 +0.7 3.5 hypothetical protein compare
AO353_12015 +0.7 1.3 antitoxin compare
AO353_22025 +0.7 1.2 iron-sulfur cluster repair di-iron protein compare
AO353_25585 +0.7 1.7 argininosuccinate lyase compare
AO353_00235 +0.7 1.7 transcriptional regulator compare
AO353_20425 +0.7 1.8 ArsC family transcriptional regulator compare
AO353_26525 +0.7 1.7 hypothetical protein compare
AO353_02620 +0.7 3.9 threonine-phosphate decarboxylase compare
AO353_09615 +0.7 4.9 type VI secretion protein compare
AO353_09575 +0.7 3.8 hypothetical protein compare
AO353_15825 +0.7 2.2 serine acetyltransferase compare
AO353_22600 +0.7 1.5 hypothetical protein compare
AO353_28960 +0.7 2.0 Fis family transcriptional regulator compare
AO353_24440 +0.7 1.5 reactive intermediate/imine deaminase compare
AO353_22955 +0.7 2.2 tRNA hydroxylase compare
AO353_09510 +0.7 4.9 type VI secretion-associated lipoprotein TagQ compare
AO353_12565 +0.7 2.4 type II secretion system protein GspH compare
AO353_00540 +0.7 1.5 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_15595 +0.7 2.2 hypothetical protein compare
AO353_05415 +0.7 1.4 hypothetical protein compare
AO353_02090 +0.6 4.1 N-ethylammeline chlorohydrolase compare
AO353_23450 +0.6 2.2 LysR family transcriptional regulator compare
AO353_17635 +0.6 3.9 RNA polymerase subunit sigma compare
AO353_02595 +0.6 2.3 cobalamin synthase compare
AO353_23220 +0.6 1.7 hypothetical protein compare
AO353_08775 +0.6 1.6 cell division protein ZapA compare
AO353_09585 +0.6 4.2 Hcp1 family type VI secretion system effector compare
AO353_24260 +0.6 1.6 hypothetical protein compare
AO353_09610 +0.6 4.7 type VI secretion system protein ImpG compare
AO353_28015 +0.6 2.1 hypothetical protein compare
AO353_20860 +0.6 1.4 hypothetical protein compare
AO353_22220 +0.6 2.4 copper resistance protein CopC compare
AO353_14485 +0.6 1.3 pseudouridine synthase compare
AO353_09440 +0.6 1.6 type VI secretion protein compare
AO353_03510 +0.6 1.8 glycine cleavage system protein T compare
AO353_22810 +0.6 1.1 hypothetical protein compare
AO353_24225 +0.6 3.1 hypothetical protein compare
AO353_27950 +0.6 1.1 hypothetical protein compare
AO353_26115 +0.6 1.3 hypothetical protein compare
AO353_12315 +0.6 4.9 glucosyltransferase MdoH compare
AO353_24165 +0.6 2.8 hypothetical protein compare
AO353_27720 +0.6 2.5 cupin compare
AO353_27725 +0.6 2.0 GNAT family acetyltransferase compare
AO353_08440 +0.6 2.4 hypothetical protein compare
AO353_28055 +0.6 2.0 hypothetical protein compare
AO353_19435 +0.6 1.6 TetR family transcriptional regulator compare
AO353_22920 +0.6 2.7 GntR family transcriptional regulator compare
AO353_14555 +0.6 4.9 paraquat-inducible protein A compare
AO353_23510 +0.6 2.3 transcriptional regulator compare
AO353_09515 +0.6 4.1 type VI secretion protein compare
AO353_08100 +0.6 1.9 chemotaxis protein CheY compare
AO353_27710 +0.6 1.4 DNA repair protein compare
AO353_09545 +0.6 5.1 type VI secretion protein IcmF compare
AO353_09555 +0.6 4.3 type VI secretion protein compare
AO353_21095 +0.5 2.7 glutamine cyclotransferase compare
AO353_09560 +0.5 1.3 type VI secretion protein compare
AO353_00975 +0.5 2.0 hypothetical protein compare
AO353_09580 +0.5 4.1 EvpB family type VI secretion protein compare
AO353_12690 +0.5 0.7 acyl carrier protein compare
AO353_23280 +0.5 2.2 hypothetical protein compare
AO353_09045 +0.5 0.9 hypothetical protein compare
AO353_09550 +0.5 3.9 hypothetical protein compare
AO353_18840 +0.5 2.0 flagellar biosynthesis protein FlhB compare
AO353_19295 +0.5 1.0 hypothetical protein compare
AO353_23370 +0.5 2.4 cytochrome C compare
AO353_09600 +0.5 2.4 hypothetical protein compare
AO353_21940 +0.5 1.9 protein nirG compare
AO353_00635 +0.5 1.3 hypothetical protein compare
AO353_17930 +0.5 2.4 restriction endonuclease compare
AO353_03015 +0.5 1.9 arginine N-succinyltransferase compare
AO353_22970 +0.5 3.3 structural protein MipA compare
AO353_14590 +0.5 1.3 serine kinase/phosphatase compare
AO353_13920 +0.5 1.8 dihydroxyacetone kinase compare
AO353_26280 +0.5 1.5 peptidase M48, Ste24p compare
AO353_14930 +0.5 1.2 GntR family transcriptional regulator compare
AO353_04055 +0.5 1.2 methionine--tRNA ligase compare
AO353_09570 +0.5 3.3 type VI secretion protein ImpA compare
AO353_04480 +0.5 2.0 NGG1p interacting factor NIF3 compare
AO353_14915 +0.5 1.1 (2Fe-2S)-binding protein compare
AO353_15410 +0.5 1.2 hypothetical protein compare
AO353_12540 +0.5 1.4 hypothetical protein compare
AO353_04090 +0.5 1.2 leucyl-tRNA synthetase compare
AO353_25845 +0.5 1.3 GNAT family acetyltransferase compare
AO353_21935 +0.5 1.3 nitrite reductase compare
AO353_20925 +0.5 1.3 hypothetical protein compare
AO353_26805 +0.5 2.5 (2Fe-2S)-binding protein compare
AO353_26795 +0.5 1.6 NAD-dependent deacetylase compare
AO353_16675 +0.5 2.1 phage tail protein compare
AO353_19750 +0.5 0.8 diaminopimelate epimerase compare
AO353_18765 +0.5 1.6 hypothetical protein compare
AO353_23835 +0.5 1.5 hypothetical protein compare
AO353_08435 +0.5 1.3 phosphatidylglycerophosphatase compare
AO353_16210 +0.5 3.6 XRE family transcriptional regulator compare
AO353_14560 +0.5 4.1 mammalian cell entry protein compare
AO353_22835 +0.5 1.8 antibiotic biosynthesis monooxygenase compare
AO353_12310 +0.5 3.5 glucan biosynthesis protein G compare
AO353_06125 +0.5 2.0 ArsR family transcriptional regulator compare
AO353_19340 +0.5 3.6 amino acid ABC transporter substrate-binding protein compare
AO353_13585 +0.5 2.0 predicted copper homeostasis protein (from data) compare
AO353_12730 +0.5 2.4 hypothetical protein compare
AO353_02220 +0.4 0.9 hypothetical protein compare
AO353_02150 +0.4 1.3 fumarate hydratase compare
AO353_04890 +0.4 2.2 biopolymer transporter ExbB compare
AO353_16415 +0.4 3.4 beta-(1-3)-glucosyl transferase compare
AO353_09565 +0.4 3.0 type VI secretion protein compare
AO353_02720 +0.4 2.1 cysteine synthase compare
AO353_12535 +0.4 1.3 hypothetical protein compare
AO353_16895 +0.4 3.7 hypothetical protein compare
AO353_12345 +0.4 1.0 twin-arginine protein translocation system subunit TatC compare
AO353_26815 +0.4 1.8 transcriptional regulator compare
AO353_27415 +0.4 1.3 hypothetical protein compare
AO353_22520 +0.4 1.2 hypothetical protein compare
AO353_04420 +0.4 1.4 Fe-S protein compare
AO353_10150 +0.4 2.7 dihydroorotase compare
AO353_02590 +0.4 1.5 MarR family transcriptional regulator compare
AO353_00105 +0.4 0.8 hypothetical protein compare
AO353_18560 +0.4 0.9 class I peptide chain release factor compare
AO353_06540 +0.4 1.2 hypothetical protein compare
AO353_17565 +0.4 2.2 hypothetical protein compare
AO353_21775 +0.4 1.6 transporter compare
AO353_03305 +0.4 1.9 hypothetical protein compare
AO353_28000 +0.4 1.9 branched-chain amino acid ABC transporter compare
AO353_03405 +0.4 2.6 histidine kinase compare
AO353_09775 +0.4 1.6 hypothetical protein compare
AO353_18980 +0.4 1.8 DoxX family protein compare
AO353_02205 +0.4 2.4 hypothetical protein compare
AO353_00360 +0.4 1.8 ATPase compare
AO353_14665 +0.4 2.2 alpha/beta hydrolase compare
AO353_20815 +0.4 1.4 LacI family transcriptional regulator compare
AO353_00090 +0.4 1.3 hypothetical protein compare
AO353_00325 +0.4 1.7 pilus assembly protein compare
AO353_28475 +0.4 2.0 NmrA family transcriptional regulator compare
AO353_09345 +0.4 1.2 hypothetical protein compare
AO353_01220 +0.4 1.2 hypothetical protein compare
AO353_27925 +0.4 1.0 hypothetical protein compare
AO353_17025 +0.4 3.2 beta-agarase compare
AO353_05280 +0.4 1.2 4-carboxymuconolactone decarboxylase compare
AO353_06240 +0.4 2.5 HAD family hydrolase compare
AO353_29085 +0.4 2.2 methyltransferase compare
AO353_14550 +0.4 3.2 paraquat-inducible protein A compare
AO353_21360 +0.4 2.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) compare
AO353_20370 +0.4 1.2 MerR family transcriptional regulator compare
AO353_07790 +0.4 2.0 ABC transporter for Carnitine, ATPase component (from data) compare
AO353_25385 +0.4 1.5 molybdenum cofactor biosynthesis protein MoaC compare
AO353_28165 +0.4 1.5 ABC transporter substrate-binding protein compare
AO353_11780 +0.4 1.3 hypothetical protein compare
AO353_06775 +0.4 2.0 dTDP-4-dehydrorhamnose reductase compare
AO353_22980 +0.4 1.4 hypothetical protein compare
AO353_22330 +0.4 1.3 AraC family transcriptional regulator compare
AO353_27535 +0.4 1.3 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_05210 +0.4 1.6 hypothetical protein compare
AO353_13635 +0.4 1.7 hypothetical protein compare
AO353_02885 +0.4 0.8 flagellar biosynthesis protein FlgN compare
AO353_00620 +0.4 0.8 cytochrome C oxidase Cbb3 compare
AO353_21510 +0.4 2.2 hypothetical protein compare
AO353_00955 +0.4 0.8 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_13840 +0.4 1.9 histidine kinase compare
AO353_07465 +0.4 0.9 addiction module toxin RelE compare
AO353_05810 +0.4 1.2 dehydrogenase compare
AO353_13465 +0.4 2.1 hypothetical protein compare
AO353_03715 +0.4 0.9 H-NS histone compare
AO353_26285 +0.4 1.0 hypothetical protein compare
AO353_23385 +0.4 2.2 trans-2-enoyl-CoA reductase compare
AO353_28300 +0.4 1.3 cupin compare
AO353_17375 +0.4 3.1 beta-D-glucoside glucohydrolase compare
AO353_13845 +0.4 2.1 hypothetical protein compare
AO353_15210 +0.4 1.5 Zn-dependent hydrolase compare
AO353_22375 +0.4 1.4 cytochrome c-550 PedF compare
AO353_11655 +0.4 1.9 SfnB family sulfur acquisition oxidoreductase compare
AO353_18325 +0.4 1.1 hypothetical protein compare
AO353_06665 +0.4 1.9 iron-hydroxamate ABC transporter substrate-binding protein compare
AO353_26310 +0.4 1.5 hypothetical protein compare
AO353_13820 +0.4 2.2 ATPase compare
AO353_09215 +0.3 3.0 peptide ABC transporter substrate-binding protein compare
AO353_00885 +0.3 1.2 3-methylitaconate isomerase compare
AO353_20535 +0.3 1.0 hypothetical protein compare
AO353_08295 +0.3 1.6 twin-arginine translocation pathway signal protein compare
AO353_13590 +0.3 1.9 cobalt-precorrin-6X reductase compare
AO353_21890 +0.3 1.9 molybdenum cofactor biosynthesis protein MoaC compare
AO353_05530 +0.3 1.2 hypothetical protein compare
AO353_10615 +0.3 1.8 pilus assembly protein PilZ compare


Specific Phenotypes

For 9 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas fluorescens FW300-N2E3

For stress Polymyxin B sulfate across organisms