Experiment set3IT061 for Methanococcus maripaludis JJ

Compare to:

formate McAA lipolic acid dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00580 -6.1 -3.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS04475 -5.9 -4.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS00235 -5.8 -19.0 hypothetical protein compare
MMJJ_RS00275 -5.4 -3.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS04485 -5.1 -12.6 riboflavin synthase compare
MMJJ_RS04200 -5.0 -9.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00210 -5.0 -3.4 DUF530 family protein compare
MMJJ_RS07720 -5.0 -3.0 UPF0058 family protein compare
MMJJ_RS01600 -4.9 -3.4 radical SAM protein compare
MMJJ_RS00450 -4.6 -2.9 DUF126 domain-containing protein compare
MMJJ_RS06855 -4.5 -2.3 DUF2104 domain-containing protein compare
MMJJ_RS00600 -4.5 -5.1 hydroxymethylbilane synthase compare
MMJJ_RS05450 -4.5 -18.8 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06910 -4.4 -4.2 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06695 -4.3 -4.9 amidohydrolase compare
MMJJ_RS05445 -4.3 -3.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS02045 -4.2 -4.8 molybdenum cofactor guanylyltransferase compare
MMJJ_RS05070 -4.2 -3.8 DNA primase catalytic subunit PriS compare
MMJJ_RS09175 -4.1 -1.8 anthranilate synthase component I compare
MMJJ_RS02040 -4.1 -3.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03785 -4.1 -2.8 hypothetical protein compare
MMJJ_RS06390 -4.1 -3.0 NADPH-dependent F420 reductase compare
MMJJ_RS07950 -4.1 -4.7 4Fe-4S binding protein compare
MMJJ_RS06860 -4.0 -4.3 hypothetical protein compare
MMJJ_RS08320 -4.0 -4.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03270 -3.9 -3.4 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07360 -3.9 -2.7 TIGR00269 family protein compare
MMJJ_RS00270 -3.9 -5.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05950 -3.9 -4.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01750 -3.9 -4.2 ferrous iron transport protein A compare
MMJJ_RS08625 -3.9 -8.2 magnesium/cobalt transporter CorA compare
MMJJ_RS03055 -3.8 -4.3 hypothetical protein compare
MMJJ_RS06625 -3.8 -3.1 pyruvate synthase subunit PorB compare
MMJJ_RS03820 -3.8 -5.7 hydrogenase formation protein HypD compare
MMJJ_RS08250 -3.8 -8.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS01870 -3.7 -3.5 methanogenesis marker 15 protein compare
MMJJ_RS06255 -3.7 -8.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01935 -3.7 -6.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07670 -3.7 -18.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07665 -3.7 -22.8 formate dehydrogenase subunit alpha compare
MMJJ_RS08020 -3.7 -10.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06240 -3.6 -3.9 dihydropteroate synthase-like protein compare
MMJJ_RS00570 -3.6 -3.1 ribonuclease P compare
MMJJ_RS07705 -3.6 -4.9 GTP-binding protein EngB compare
MMJJ_RS04790 -3.6 -6.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS03670 -3.6 -7.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05330 -3.6 -3.5 DNA polymerase II large subunit compare
MMJJ_RS05575 -3.6 -6.7 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS00520 -3.6 -7.4 PDGLE domain-containing protein compare
MMJJ_RS03615 -3.6 -4.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS05535 -3.5 -15.8 hypothetical protein compare
MMJJ_RS09190 -3.5 -2.2 tryptophan synthase subunit beta compare
MMJJ_RS01200 -3.5 -3.4 PRC-barrel domain-containing protein compare
MMJJ_RS06725 -3.5 -13.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06875 -3.5 -4.2 hypothetical protein compare
MMJJ_RS07380 -3.5 -10.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06225 -3.5 -3.2 adenosylmethionine decarboxylase compare
MMJJ_RS03190 -3.5 -3.3 phosphopyruvate hydratase compare
MMJJ_RS04685 -3.5 -11.2 carbamoyltransferase HypF compare
MMJJ_RS03840 -3.5 -6.1 DHH family phosphoesterase compare
MMJJ_RS03580 -3.4 -5.2 TIGR00303 family protein compare
MMJJ_RS05260 -3.4 -8.2 ATP-grasp domain-containing protein compare
MMJJ_RS07655 -3.4 -15.5 hypothetical protein compare
MMJJ_RS06175 -3.4 -3.4 DUF1743 domain-containing protein compare
MMJJ_RS04970 -3.4 -3.1 DUF655 domain-containing protein compare
MMJJ_RS08080 -3.3 -10.1 TIGR00300 family protein compare
MMJJ_RS07275 -3.3 -3.9 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS06490 -3.3 -4.7 methanogenesis marker 2 protein compare
MMJJ_RS03110 -3.3 -5.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07000 -3.3 -2.4 TrkH family potassium uptake protein compare
MMJJ_RS08850 -3.3 -3.6 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06040 -3.2 -6.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08000 -3.1 -9.5 HesA/MoeB/ThiF family protein compare
MMJJ_RS06805 -3.1 -3.6 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06915 -3.1 -14.0 helix-turn-helix domain-containing protein compare
MMJJ_RS03125 -3.1 -4.9 GMC oxidoreductase compare
MMJJ_RS06930 -3.1 -4.0 type II methionyl aminopeptidase compare
MMJJ_RS02090 -3.1 -7.3 tyramine--L-glutamate ligase compare
MMJJ_RS05490 -3.1 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS01755 -3.1 -3.6 ferrous iron transport protein B compare
MMJJ_RS05810 -3.0 -9.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS08055 -3.0 -7.9 methanogenesis marker 14 protein compare
MMJJ_RS05610 -3.0 -6.4 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03660 -2.9 -5.5 DUF447 family protein compare
MMJJ_RS04975 -2.9 -2.8 glycosyltransferase family 4 protein compare
MMJJ_RS05650 -2.9 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07785 -2.9 -4.4 fumarate reductase subunit A compare
MMJJ_RS05620 -2.9 -6.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS04730 -2.8 -3.6 tyrosine decarboxylase MfnA compare
MMJJ_RS04995 -2.8 -8.3 Tfx family DNA-binding protein compare
MMJJ_RS04155 -2.8 -9.4 hypothetical protein compare
MMJJ_RS05935 -2.8 -3.7 Era-like GTP-binding protein compare
MMJJ_RS04800 -2.8 -6.3 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS06750 -2.8 -4.0 homoaconitase large subunit compare
MMJJ_RS03065 -2.8 -11.9 CBS domain-containing protein compare
MMJJ_RS00050 -2.8 -10.7 AAA family ATPase compare
MMJJ_RS03295 -2.8 -15.1 PHP domain-containing protein compare
MMJJ_RS08005 -2.8 -15.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS03060 -2.7 -4.0 methanogenesis marker 7 protein compare
MMJJ_RS03150 -2.7 -8.8 2-phospho-L-lactate transferase compare
MMJJ_RS04675 -2.7 -6.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS03875 -2.7 -5.6 CBS domain-containing protein compare
MMJJ_RS09375 -2.7 -2.7 hypothetical protein compare
MMJJ_RS03200 -2.7 -3.6 uroporphyrinogen-III synthase compare
MMJJ_RS07245 -2.7 -6.3 amidohydrolase family protein compare
MMJJ_RS07350 -2.6 -3.5 4Fe-4S binding protein compare
MMJJ_RS07430 -2.6 -5.1 ribonuclease VapC compare
MMJJ_RS04985 -2.6 -5.2 glutamyl-tRNA reductase compare
MMJJ_RS00125 -2.6 -2.8 KEOPS complex subunit Cgi121 compare
MMJJ_RS00530 -2.6 -12.3 cobalt ECF transporter T component CbiQ compare
MMJJ_RS04615 -2.6 -4.7 methanogenesis marker 3 protein compare
MMJJ_RS00560 -2.6 -4.3 homoisocitrate dehydrogenase compare
MMJJ_RS04875 -2.6 -2.3 tRNA-Lys compare
MMJJ_RS08840 -2.6 -5.3 calcium/sodium antiporter compare
MMJJ_RS03815 -2.6 -2.7 nascent polypeptide-associated complex protein compare
MMJJ_RS03800 -2.5 -11.5 aldolase compare
MMJJ_RS06030 -2.5 -7.6 4Fe-4S binding protein compare
MMJJ_RS07660 -2.5 -11.1 carbonic anhydrase compare
MMJJ_RS06785 -2.5 -7.7 RNA ligase partner protein compare
MMJJ_RS01360 -2.5 -3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS08855 -2.5 -5.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS05225 -2.5 -2.4 Gar1/Naf1 family protein compare
MMJJ_RS06375 -2.5 -5.4 UbiX family flavin prenyltransferase compare
MMJJ_RS06180 -2.5 -3.3 tryptophan--tRNA ligase compare
MMJJ_RS01415 -2.5 -3.0 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00475 -2.5 -3.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03620 -2.5 -6.1 DUF2097 domain-containing protein compare
MMJJ_RS02935 -2.5 -4.2 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS08095 -2.5 -4.9 cobyric acid synthase CobQ compare
MMJJ_RS04520 -2.5 -5.2 coenzyme F430 synthase compare
MMJJ_RS05065 -2.5 -5.2 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS05720 -2.5 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00045 -2.4 -14.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS08340 -2.4 -5.3 archaeoflavoprotein AfpA compare
MMJJ_RS00070 -2.4 -6.5 CooT family nickel-binding protein compare
MMJJ_RS07155 -2.4 -9.8 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03115 -2.4 -7.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06220 -2.4 -6.1 polyamine aminopropyltransferase compare
MMJJ_RS00040 -2.4 -7.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS01565 -2.4 -8.5 TIGR00267 family protein compare
MMJJ_RS00055 -2.4 -10.3 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS06840 -2.4 -4.5 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01865 -2.4 -6.1 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS08155 -2.4 -4.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03830 -2.4 -10.7 CBS domain-containing protein compare
MMJJ_RS06185 -2.4 -5.7 cobalamin biosynthesis protein compare
MMJJ_RS00060 -2.3 -16.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS02920 -2.3 -2.2 30S ribosomal protein S27ae compare
MMJJ_RS00075 -2.3 -11.4 AAA family ATPase compare
MMJJ_RS00035 -2.3 -15.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS04655 -2.3 -7.2 FAD-dependent oxidoreductase compare
MMJJ_RS00370 -2.3 -2.5 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS05360 -2.3 -6.2 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06835 -2.3 -10.8 4Fe-4S binding protein compare
MMJJ_RS03005 -2.3 -5.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS05655 -2.3 -6.5 HisA/HisF family protein compare
MMJJ_RS05295 -2.3 -9.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06250 -2.3 -3.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS01690 -2.3 -4.0 methanogenesis marker 12 protein compare
MMJJ_RS00065 -2.2 -9.7 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS04595 -2.2 -4.0 hypothetical protein compare
MMJJ_RS05190 -2.2 -9.5 gamma carbonic anhydrase family protein compare
MMJJ_RS00080 -2.2 -13.1 DUF166 domain-containing protein compare
MMJJ_RS03630 -2.2 -12.4 AMP phosphorylase compare
MMJJ_RS07410 -2.2 -3.7 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07945 -2.2 -2.6 4Fe-4S binding protein compare
MMJJ_RS00215 -2.2 -3.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS05375 -2.2 -13.1 radical SAM protein compare
MMJJ_RS01355 -2.1 -4.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS08330 -2.1 -2.8 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07190 -2.1 -4.8 RtcB family protein compare
MMJJ_RS06865 -2.1 -2.8 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08620 -2.1 -3.5 DUF373 family protein compare
MMJJ_RS02275 -2.1 -3.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08190 -2.1 -2.8 hypothetical protein compare
MMJJ_RS07345 -2.1 -6.9 homocysteine biosynthesis protein compare
MMJJ_RS06155 -2.1 -5.9 phosphatidylglycerophosphatase A compare
MMJJ_RS04110 -2.0 -4.4 hypothetical protein compare
MMJJ_RS03895 -2.0 -3.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS00205 -2.0 -5.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05155 -2.0 -6.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00645 -2.0 -11.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS07640 -2.0 -16.3 cache domain-containing protein compare
MMJJ_RS07980 -2.0 -10.9 biotin synthase BioB compare
MMJJ_RS05995 -2.0 -2.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS04565 -2.0 -2.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS03865 -2.0 -2.4 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS01345 -2.0 -4.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS02055 -2.0 -9.8 GTP 3',8-cyclase MoaA compare
MMJJ_RS08535 -2.0 -3.9 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07995 -2.0 -7.0 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00515 -2.0 -9.6 cobalt transporter CbiM compare
MMJJ_RS04980 -1.9 -3.3 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS00265 -1.9 -7.0 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS06270 -1.9 -8.5 dethiobiotin synthase compare
MMJJ_RS01880 -1.9 -2.5 RlmE family RNA methyltransferase compare
MMJJ_RS06485 -1.9 -3.2 phosphoglycerate kinase compare
MMJJ_RS04010 -1.9 -7.7 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06730 -1.9 -6.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS03095 -1.9 -2.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments