Experiment set3IT061 for Paraburkholderia bryophila 376MFSha3.1
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Group: supernatantMedia: LB (0.5x) + supernatant from Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted (0.5 x)
Culturing: Burk376_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Trenton on 5/2/18
Media components: 5 g/L Tryptone, 2.5 g/L Yeast Extract, 2.5 g/L Sodium Chloride (final concentrations)
Growth plate: Plate4a C1
Specific Phenotypes
For 3 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 2 | 1 |
| cardiolipin biosynthesis III | 3 | 2 | 1 |
| phosphatidylglycerol biosynthesis II | 6 | 6 | 1 |
| phosphatidylglycerol biosynthesis I | 6 | 6 | 1 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 10 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 9 | 1 |
| type I lipoteichoic acid biosynthesis (S. aureus) | 17 | 5 | 1 |
| superpathway of phospholipid biosynthesis II (plants) | 28 | 10 | 1 |