Experiment set3IT061 for Burkholderia phytofirmans PsJN

Compare to:

L-Asparagine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02570 +2.2 13.5 phosphocarrier protein HPr compare
BPHYT_RS16335 +1.8 1.8 membrane protein compare
BPHYT_RS26775 +1.8 1.9 chemotaxis protein CheB compare
BPHYT_RS08000 +1.6 3.9 antibiotic biosynthesis monooxygenase compare
BPHYT_RS00770 +1.4 1.6 conjugal transfer protein TraC compare
BPHYT_RS18665 +1.4 9.5 GumN family protein compare
BPHYT_RS28350 +1.4 3.1 fatty acid desaturase compare
BPHYT_RS16180 +1.3 1.3 TetR family transcriptional regulator compare
BPHYT_RS33990 +1.3 1.4 ATPase compare
BPHYT_RS04215 +1.2 3.0 hypothetical protein compare
BPHYT_RS17805 +1.2 2.3 hypothetical protein compare
BPHYT_RS31125 +1.2 3.3 hypothetical protein compare
BPHYT_RS02575 +1.2 6.4 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS26975 +1.2 1.6 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS35730 +1.1 2.7 hypothetical protein compare
BPHYT_RS11635 +1.1 1.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS26300 +1.1 1.6 ATP-dependent DNA ligase compare
BPHYT_RS22265 +1.1 1.2 hypothetical protein compare
BPHYT_RS21905 +1.1 1.2 IclR family transcriptional regulator compare
BPHYT_RS29855 +1.0 1.4 protein-tyrosine-phosphatase compare
BPHYT_RS25770 +1.0 1.0 hypothetical protein compare
BPHYT_RS01795 +1.0 4.8 histidine kinase compare
BPHYT_RS27570 +1.0 1.9 universal stress protein UspA compare
BPHYT_RS25970 +1.0 1.0 urea amidolyase compare
BPHYT_RS29475 +1.0 1.9 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS32150 +1.0 1.8 hypothetical protein compare
BPHYT_RS35165 +0.9 1.3 peptidase compare
BPHYT_RS18860 +0.9 4.7 flagellar P-ring protein FlgI compare
BPHYT_RS27445 +0.9 1.5 hypothetical protein compare
BPHYT_RS18935 +0.9 3.5 flagellar biosynthesis regulator FlhF compare
BPHYT_RS24255 +0.9 1.3 hypothetical protein compare
BPHYT_RS08595 +0.9 1.9 multidrug transporter compare
BPHYT_RS06335 +0.9 1.3 CopG family transcriptional regulator compare
BPHYT_RS17905 +0.9 1.4 fimbrial assembly family protein compare
BPHYT_RS23090 +0.9 1.4 histidine kinase compare
BPHYT_RS13430 +0.9 2.7 radical SAM protein compare
BPHYT_RS35750 +0.9 1.2 hypothetical protein compare
BPHYT_RS23975 +0.9 1.5 peroxidase compare
BPHYT_RS12825 +0.9 2.0 phasin family protein compare
BPHYT_RS18895 +0.9 2.3 flagellar basal body rod protein FlgB compare
BPHYT_RS02180 +0.9 1.4 hypothetical protein compare
BPHYT_RS26560 +0.9 1.2 murein hydrolase transporter LrgA compare
BPHYT_RS12635 +0.9 3.5 translation factor Sua5 compare
BPHYT_RS18635 +0.8 1.9 LamB/YcsF family protein compare
BPHYT_RS09930 +0.8 1.8 LysR family transcriptional regulator compare
BPHYT_RS34500 +0.8 2.2 hypothetical protein compare
BPHYT_RS28965 +0.8 1.7 hypothetical protein compare
BPHYT_RS01790 +0.8 4.7 LuxR family transcriptional regulator compare
BPHYT_RS05395 +0.8 1.1 hypothetical protein compare
BPHYT_RS23445 +0.8 1.3 hexuronate transporter compare
BPHYT_RS04010 +0.8 1.1 glycosyl transferase compare
BPHYT_RS10315 +0.8 1.7 MFS transporter compare
BPHYT_RS34260 +0.8 1.7 hypothetical protein compare
BPHYT_RS32605 +0.8 2.0 hypothetical protein compare
BPHYT_RS33045 +0.8 1.3 response regulator receiver protein compare
BPHYT_RS24580 +0.8 0.9 hypothetical protein compare
BPHYT_RS27030 +0.8 1.2 transcriptional regulator compare
BPHYT_RS10720 +0.8 1.2 hypothetical protein compare
BPHYT_RS18945 +0.8 5.6 flagellar biosynthesis protein FlhB compare
BPHYT_RS23225 +0.8 1.6 hypothetical protein compare
BPHYT_RS18640 +0.8 2.6 membrane protein compare
BPHYT_RS36540 +0.8 1.6 hypothetical protein compare
BPHYT_RS29800 +0.8 1.7 hypothetical protein compare
BPHYT_RS23535 +0.8 1.7 ABC transporter substrate-binding protein compare
BPHYT_RS07870 +0.8 2.3 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BPHYT_RS00325 +0.8 1.5 hypothetical protein compare
BPHYT_RS29110 +0.8 1.5 DNA-directed DNA polymerase compare
BPHYT_RS01415 +0.8 2.1 phenylacetic acid degradation protein compare
BPHYT_RS25135 +0.8 1.8 hypothetical protein compare
BPHYT_RS33170 +0.8 2.0 acetyltransferase compare
BPHYT_RS15070 +0.8 1.9 amidase compare
BPHYT_RS36460 +0.8 1.5 hypothetical protein compare
BPHYT_RS29310 +0.8 1.5 oxidoreductase compare
BPHYT_RS35955 +0.8 1.1 hypothetical protein compare
BPHYT_RS25440 +0.8 1.6 alanine dehydrogenase compare
BPHYT_RS18830 +0.7 3.8 flagellar biosynthesis protein FliQ compare
BPHYT_RS26570 +0.7 0.9 5'-nucleotidase compare
BPHYT_RS32880 +0.7 1.2 alanine acetyltransferase compare
BPHYT_RS07675 +0.7 1.6 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS18775 +0.7 5.1 flagellar M-ring protein FliF compare
BPHYT_RS28065 +0.7 0.9 hypothetical protein compare
BPHYT_RS33060 +0.7 1.3 hypothetical protein compare
BPHYT_RS11215 +0.7 3.4 ribose ABC transporter ATPase compare
BPHYT_RS33030 +0.7 0.6 hypothetical protein compare
BPHYT_RS30300 +0.7 2.6 FMN reductase compare
BPHYT_RS07060 +0.7 2.5 aldo/keto reductase compare
BPHYT_RS32905 +0.7 2.1 FAD-linked oxidase compare
BPHYT_RS35300 +0.7 2.6 flavin reductase compare
BPHYT_RS06250 +0.7 1.7 pilus assembly protein PapD compare
BPHYT_RS28240 +0.7 2.3 L-rhamnonate dehydratase compare
BPHYT_RS04170 +0.7 1.4 hypothetical protein compare
BPHYT_RS09765 +0.7 1.4 G-D-S-L family lipolytic protein compare
BPHYT_RS05650 +0.7 0.8 hypothetical protein compare
BPHYT_RS25055 +0.7 1.3 MFS transporter compare
BPHYT_RS18880 +0.7 4.6 flagellar hook protein FlgE compare
BPHYT_RS33610 +0.7 1.1 DNA polymerase I compare
BPHYT_RS01095 +0.7 0.9 hypothetical protein compare
BPHYT_RS09895 +0.7 0.9 LysR family transcriptional regulator compare
BPHYT_RS31030 +0.7 2.5 tyrosine protein kinase compare
BPHYT_RS20935 +0.7 2.4 dehydrogenase compare
BPHYT_RS32415 +0.7 1.8 translation elongation factor compare
BPHYT_RS32475 +0.7 1.3 dihydroxyacetone kinase compare
BPHYT_RS26550 +0.7 0.6 Fis family transcriptional regulator compare
BPHYT_RS24390 +0.7 2.5 hypothetical protein compare
BPHYT_RS30725 +0.7 1.8 hypothetical protein compare
BPHYT_RS29085 +0.7 1.3 LysR family transcriptional regulator compare
BPHYT_RS00530 +0.7 1.6 hypothetical protein compare
BPHYT_RS36495 +0.7 1.1 peptidase compare
BPHYT_RS30120 +0.7 1.6 heavy metal transporter compare
BPHYT_RS10695 +0.7 1.1 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS26965 +0.7 0.7 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS14500 +0.7 1.3 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS05580 +0.7 1.5 hypothetical protein compare
BPHYT_RS33135 +0.7 1.1 LysR family transcriptional regulator compare
BPHYT_RS20060 +0.7 0.8 hypothetical protein compare
BPHYT_RS07255 +0.7 1.8 4-oxalocrotonate decarboxylase compare
BPHYT_RS18790 +0.7 4.2 ATP synthase compare
BPHYT_RS05895 +0.7 0.6 hypothetical protein compare
BPHYT_RS28040 +0.7 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS21620 +0.7 0.9 GCN5 family acetyltransferase compare
BPHYT_RS21770 +0.7 1.0 aldehyde dehydrogenase compare
BPHYT_RS32750 +0.7 1.0 lipoprotein compare
BPHYT_RS28860 +0.7 0.6 haloacid dehalogenase compare
BPHYT_RS20805 +0.7 2.4 LacI family transcriptional regulator compare
BPHYT_RS03090 +0.7 0.8 hypothetical protein compare
BPHYT_RS03155 +0.7 2.1 histidine triad (HIT) protein compare
BPHYT_RS27145 +0.7 1.8 TetR family transcriptional regulator compare
BPHYT_RS33825 +0.7 2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS11895 +0.7 1.5 peroxiredoxin compare
BPHYT_RS23910 +0.7 1.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS30590 +0.7 0.7 transcriptional regulator compare
BPHYT_RS25590 +0.7 1.6 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS11750 +0.6 1.1 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS31515 +0.6 1.6 agmatinase compare
BPHYT_RS14255 +0.6 4.7 ABC transporter compare
BPHYT_RS14250 +0.6 4.7 glycosyl transferase compare
BPHYT_RS16950 +0.6 2.1 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS02900 +0.6 1.3 ribosome hibernation promoting factor compare
BPHYT_RS11515 +0.6 2.7 LysR family transcriptional regulator compare
BPHYT_RS15260 +0.6 1.3 chorismate mutase compare
BPHYT_RS28780 +0.6 1.3 NADH:flavin oxidoreductase compare
BPHYT_RS22295 +0.6 0.7 LysR family transcriptional regulator compare
BPHYT_RS18940 +0.6 3.7 flagellar biosynthesis protein FlhA compare
BPHYT_RS11325 +0.6 3.5 voltage-gated chloride channel protein ClcB compare
BPHYT_RS21700 +0.6 1.4 phosphotransacetylase compare
BPHYT_RS25625 +0.6 1.7 glutathione S-transferase compare
BPHYT_RS22750 +0.6 2.0 Flagellar brake protein YcgR 2 compare
BPHYT_RS11500 +0.6 1.0 ABC transporter permease compare
BPHYT_RS35940 +0.6 2.3 hypothetical protein compare
BPHYT_RS30295 +0.6 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS07900 +0.6 0.8 hypothetical protein compare
BPHYT_RS04060 +0.6 1.4 glycosyl transferase compare
BPHYT_RS33805 +0.6 0.7 hypothetical protein compare
BPHYT_RS21625 +0.6 0.7 LysR family transcriptional regulator compare
BPHYT_RS08250 +0.6 1.1 hypothetical protein compare
BPHYT_RS12900 +0.6 1.3 transposase compare
BPHYT_RS34560 +0.6 1.3 hypothetical protein compare
BPHYT_RS00150 +0.6 1.1 DEAD/DEAH box helicase compare
BPHYT_RS11640 +0.6 1.5 hypothetical protein compare
BPHYT_RS23850 +0.6 2.5 ser/threonine protein phosphatase compare
BPHYT_RS19025 +0.6 2.5 transcriptional regulator compare
BPHYT_RS08405 +0.6 0.7 hypothetical protein compare
BPHYT_RS35675 +0.6 1.6 short-chain dehydrogenase compare
BPHYT_RS20940 +0.6 1.7 citrate synthase compare
BPHYT_RS23860 +0.6 1.6 malonic semialdehyde reductase compare
BPHYT_RS20890 +0.6 1.8 transglycosylase compare
BPHYT_RS26330 +0.6 2.0 hypothetical protein compare
BPHYT_RS26630 +0.6 1.2 AraC family transcriptional regulator compare
BPHYT_RS26705 +0.6 1.1 hypothetical protein compare
BPHYT_RS33385 +0.6 0.8 major facilitator superfamily protein compare
BPHYT_RS29840 +0.6 0.9 polysaccharide biosynthesis protein compare
BPHYT_RS09580 +0.6 1.8 2-aminoadipate aminotransferase compare
BPHYT_RS18890 +0.6 3.7 flagellar basal body rod protein FlgC compare
BPHYT_RS20660 +0.6 1.9 2-methylisocitrate lyase compare
BPHYT_RS28030 +0.6 1.6 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS05435 +0.6 1.9 ABC transporter substrate-binding protein compare
BPHYT_RS28245 +0.6 1.0 MFS transporter compare
BPHYT_RS29380 +0.6 1.7 hypothetical protein compare
BPHYT_RS13210 +0.6 2.8 hypothetical protein compare
BPHYT_RS16445 +0.6 1.0 RNA helicase compare
BPHYT_RS07300 +0.6 2.5 porin compare
BPHYT_RS31225 +0.6 1.6 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS36400 +0.6 0.6 hypothetical protein compare
BPHYT_RS04290 +0.6 0.8 glycosyl transferase family 2 compare
BPHYT_RS24725 +0.6 2.5 NmrA family transcriptional regulator compare
BPHYT_RS14150 +0.6 1.5 transposase compare
BPHYT_RS35530 +0.6 0.9 arsenate reductase compare
BPHYT_RS31900 +0.6 1.4 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS34300 +0.6 1.4 major facilitator transporter compare
BPHYT_RS33810 +0.6 2.0 membrane protein compare
BPHYT_RS26040 +0.6 0.9 cysteine hydrolase compare
BPHYT_RS29090 +0.6 1.6 oxidoreductase compare
BPHYT_RS11655 +0.6 0.9 chromosome partitioning protein ParB compare
BPHYT_RS10255 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS24115 +0.6 0.8 epimerase compare
BPHYT_RS32630 +0.6 1.4 tat pathway signal sequence compare
BPHYT_RS22200 +0.6 1.4 cardiolipin synthetase compare
BPHYT_RS31630 +0.6 1.8 hypothetical protein compare
BPHYT_RS13000 +0.6 2.0 phosphodiesterase compare
BPHYT_RS27305 +0.6 0.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-Asparagine in Burkholderia phytofirmans PsJN

For nitrogen source L-Asparagine across organisms