Experiment set3IT060 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium perchlorate monohydrate 75 mM

200 most detrimental genes:

  gene name fitness t score description  
AO353_09250 +4.6 11.6 exodeoxyribonuclease III compare
AO353_19145 +4.5 17.3 protease HtpX compare
AO353_03795 +4.3 20.7 fumarate hydratase compare
AO353_08015 +4.1 25.1 5,10-methylenetetrahydrofolate reductase compare
AO353_19360 +4.1 7.4 peroxiredoxin compare
AO353_12500 +4.0 11.6 shikimate kinase compare
AO353_21625 +3.9 10.0 Fe/S biogenesis protein NfuA compare
AO353_04190 +3.8 9.7 glycerol-3-phosphate dehydrogenase compare
AO353_11730 +3.7 26.2 glutamate--cysteine ligase compare
AO353_14495 +3.6 26.2 acetolactate synthase 3 catalytic subunit compare
AO353_11185 +3.4 23.1 channel protein TolC compare
AO353_02735 +3.4 28.1 chemotaxis protein CheY compare
AO353_21830 +3.3 24.4 chemotaxis protein CheY compare
AO353_08110 +3.2 18.4 glutathione synthetase compare
AO353_13200 +3.1 23.5 exoribonuclease R compare
AO353_00495 +3.1 6.4 DNA topoisomerase I compare
AO353_14500 +3.0 13.3 acetolactate synthase 3 regulatory subunit compare
AO353_02070 +3.0 14.7 prephenate dehydratase compare
AO353_03420 +3.0 11.8 phosphogluconate dehydratase compare
AO353_08765 +2.8 7.5 hypothetical protein compare
AO353_00835 +2.8 14.3 transporter compare
AO353_13685 +2.7 11.7 3-dehydroquinate dehydratase compare
AO353_09260 +2.7 18.7 ribonuclease PH compare
AO353_13925 +2.7 8.7 XRE family transcriptional regulator compare
AO353_12420 +2.7 11.8 predicted FeS cluster maintenance protein (from data) compare
AO353_19060 +2.7 13.4 CysB family transcriptional regulator compare
AO353_12470 +2.6 22.4 peptidase compare
AO353_09840 +2.4 6.7 chorismate--pyruvate lyase compare
AO353_05230 +2.4 16.1 ribonuclease G compare
AO353_07355 +2.4 14.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08880 +2.3 9.1 exopolyphosphatase compare
AO353_04105 +2.1 13.9 argininosuccinate synthase compare
AO353_03710 +2.1 4.8 formyltetrahydrofolate deformylase compare
AO353_12950 +2.0 11.1 polymerase compare
AO353_15185 +2.0 9.1 ATPase compare
AO353_21425 +1.9 8.5 hypothetical protein compare
AO353_19015 +1.9 16.9 hypothetical protein compare
AO353_12130 +1.9 3.2 preprotein translocase subunit SecB compare
AO353_06495 +1.9 9.2 gamma-glutamyl phosphate reductase compare
AO353_17635 +1.9 7.4 RNA polymerase subunit sigma compare
AO353_12125 +1.9 7.7 glutaredoxin compare
AO353_12045 +1.8 8.1 iron transporter compare
AO353_08685 +1.8 12.8 N-acetylglutamate synthase compare
AO353_20925 +1.8 1.9 hypothetical protein compare
AO353_20170 +1.8 7.7 trigger factor compare
AO353_17855 +1.8 7.5 ribonuclease D compare
AO353_10670 +1.8 10.4 shikimate dehydrogenase compare
AO353_00515 +1.8 6.6 hypothetical protein compare
AO353_10710 +1.7 9.1 tryptophan synthase subunit beta compare
AO353_03670 +1.7 8.3 ornithine acetyltransferase compare
AO353_08760 +1.7 10.5 Xaa-Pro aminopeptidase compare
AO353_05125 +1.7 6.7 BolA family transcriptional regulator compare
AO353_08165 +1.7 4.5 pyrroline-5-carboxylate reductase compare
AO353_09040 +1.6 3.4 diaminopimelate epimerase compare
AO353_02040 +1.6 4.7 integration host factor subunit beta compare
AO353_20340 +1.6 4.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_12345 +1.6 3.2 twin-arginine protein translocation system subunit TatC compare
AO353_20565 +1.5 4.1 tRNA-Ala compare
AO353_00695 +1.5 10.1 diguanylate cyclase compare
AO353_09000 +1.5 7.5 argininosuccinate lyase compare
AO353_14395 +1.5 5.6 poly(A) polymerase compare
AO353_02075 +1.5 7.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_05340 +1.5 5.0 histidine kinase compare
AO353_12940 +1.4 9.0 glycosyl transferase compare
AO353_12930 +1.4 5.4 GlcNAc-PI de-N-acetylase compare
AO353_12460 +1.4 9.5 malate dehydrogenase compare
AO353_09155 +1.4 9.8 amino acid dehydrogenase compare
AO353_10705 +1.4 5.9 tryptophan synthase subunit alpha compare
AO353_05685 +1.4 9.4 symporter compare
AO353_14115 +1.4 7.3 gamma-glutamyl kinase compare
AO353_14400 +1.4 6.2 Fis family transcriptional regulator compare
AO353_10925 +1.4 5.6 hypothetical protein compare
AO353_12315 +1.4 10.6 glucosyltransferase MdoH compare
AO353_04355 +1.3 3.9 homoserine dehydrogenase compare
AO353_27860 +1.3 8.5 hypothetical protein compare
AO353_22780 +1.3 3.5 phosphoglycerate mutase compare
AO353_08365 +1.3 7.6 L-cystine transporter tcyP conserved
AO353_12310 +1.3 10.5 glucan biosynthesis protein G compare
AO353_13420 +1.3 3.0 hypothetical protein compare
AO353_27865 +1.3 9.4 hypothetical protein compare
AO353_15470 +1.3 10.8 protoheme IX farnesyltransferase compare
AO353_06850 +1.3 5.1 MFS transporter compare
AO353_15465 +1.3 6.4 cytochrome C oxidase compare
AO353_19020 +1.3 3.4 hypothetical protein compare
AO353_21400 +1.2 4.0 conjugal transfer protein TraR compare
AO353_15785 +1.2 8.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_02250 +1.2 4.1 chorismate synthase compare
AO353_14150 +1.2 2.7 peptidylprolyl isomerase compare
AO353_16940 +1.2 6.6 deoxycytidine triphosphate deaminase compare
AO353_19025 +1.2 9.0 acetyltransferase compare
AO353_09895 +1.2 5.4 phosphate ABC transporter permease compare
AO353_23920 +1.2 4.4 chemotaxis protein CheR compare
AO353_17180 +1.2 4.8 hypothetical protein compare
AO353_06345 +1.2 10.9 histidine kinase compare
AO353_27130 +1.2 2.5 hypothetical protein compare
AO353_12915 +1.2 6.9 carbamoyltransferase compare
AO353_00105 +1.1 2.3 hypothetical protein compare
AO353_24600 +1.1 4.1 hypothetical protein compare
AO353_09560 +1.1 1.7 type VI secretion protein compare
AO353_13140 +1.1 4.9 tRNA dimethylallyltransferase compare
AO353_09060 +1.1 3.0 hypothetical protein compare
AO353_17175 +1.1 3.9 beta-ketoadipyl CoA thiolase compare
AO353_07325 +1.1 3.0 diadenosine tetraphosphatase compare
AO353_05390 +1.1 6.8 peptide ABC transporter substrate-binding protein compare
AO353_00855 +1.1 4.8 Rieske iron-sulfur protein compare
AO353_00610 +1.1 3.0 cytochrome C oxidase Cbb3 compare
AO353_27695 +1.1 6.6 isocitrate dehydrogenase compare
AO353_19340 +1.1 8.6 amino acid ABC transporter substrate-binding protein compare
AO353_12090 +1.1 3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_09135 +1.0 3.0 cytochrome C compare
AO353_00865 +1.0 7.9 phosphoenolpyruvate synthase compare
AO353_00845 +1.0 6.6 CmaX protein compare
AO353_00750 +1.0 3.7 GntR family transcriptional regulator compare
AO353_18225 +1.0 7.0 ATP-dependent RNA helicase HrpA compare
AO353_27550 +1.0 1.5 hypothetical protein compare
AO353_17410 +1.0 2.9 arylsulfate sulfotransferase compare
AO353_09785 +1.0 2.6 hypothetical protein compare
AO353_00430 +1.0 2.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_14740 +1.0 3.6 GTP-binding protein compare
AO353_24915 +1.0 2.2 hypothetical protein compare
AO353_02715 +1.0 2.4 23S rRNA methyltransferase compare
AO353_03630 +1.0 7.7 porin compare
AO353_00660 +1.0 2.4 transcriptional regulator compare
AO353_25550 +0.9 3.7 4-amino-4-deoxy-L-arabinose transferase compare
AO353_07155 +0.9 5.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_18170 +0.9 5.9 aspartyl beta-hydroxylase compare
AO353_19030 +0.9 6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_02060 +0.9 2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_02335 +0.9 2.1 ureidoglycolate hydrolase compare
AO353_02090 +0.9 5.8 N-ethylammeline chlorohydrolase compare
AO353_13225 +0.9 3.8 50S ribosomal protein L9 compare
AO353_15450 +0.9 5.4 ubiquinol oxidase subunit II compare
AO353_27680 +0.9 3.6 ATP-dependent Clp protease adaptor ClpS compare
AO353_09860 +0.9 6.9 histidine kinase compare
AO353_27235 +0.9 2.7 hypothetical protein compare
AO353_04500 +0.9 2.5 DNA repair protein RecO compare
AO353_24340 +0.9 2.0 TetR family transcriptional regulator compare
AO353_05415 +0.9 2.1 hypothetical protein compare
AO353_00650 +0.9 2.4 cytochrome biogenesis protein compare
AO353_15820 +0.9 5.4 RNA methyltransferase compare
AO353_15830 +0.9 2.9 transcriptional regulator compare
AO353_00860 +0.9 3.0 EstX protein compare
AO353_23730 +0.9 2.8 hypothetical protein compare
AO353_00590 +0.9 2.2 cytochrome C oxidase Cbb3 compare
AO353_12895 +0.9 2.4 lipopolysaccharide kinase compare
AO353_15285 +0.8 6.3 hypothetical protein compare
AO353_05625 +0.8 1.7 transcription elongation factor GreA compare
AO353_06775 +0.8 5.5 dTDP-4-dehydrorhamnose reductase compare
AO353_25450 +0.8 2.1 cyanate hydratase compare
AO353_19005 +0.8 4.9 esterase compare
AO353_19365 +0.8 3.4 thiol:disulfide interchange protein compare
AO353_10895 +0.8 4.1 hypothetical protein compare
AO353_10510 +0.8 1.5 benzoate transporter compare
AO353_00435 +0.8 6.9 transcription-repair coupling factor compare
AO353_18590 +0.8 4.2 AAA family ATPase compare
AO353_23735 +0.8 4.8 AAA family ATPase compare
AO353_26090 +0.8 2.1 hypothetical protein compare
AO353_04015 +0.8 5.1 histidine kinase compare
AO353_25505 +0.8 5.6 4-amino-4-deoxy-L-arabinose transferase compare
AO353_21430 +0.8 2.6 hypothetical protein compare
AO353_28495 +0.8 2.5 hypothetical protein compare
AO353_04625 +0.8 6.1 ATP-dependent RNA helicase RhlB compare
AO353_07460 +0.8 1.8 DNA-binding protein compare
AO353_21175 +0.8 2.0 hypothetical protein compare
AO353_17620 +0.8 5.7 L-aspartate oxidase compare
AO353_22735 +0.8 2.6 hypothetical protein compare
AO353_17850 +0.8 2.4 SAM-dependent methyltransferase compare
AO353_09565 +0.8 4.4 type VI secretion protein compare
AO353_19035 +0.8 4.9 pilus assembly protein PilZ compare
AO353_08695 +0.8 4.7 adenylate cyclase compare
AO353_17250 +0.8 2.4 nitrile hydratase compare
AO353_10945 +0.8 3.0 cytochrome C compare
AO353_23710 +0.8 3.5 protein BatD compare
AO353_15480 +0.8 1.9 hypothetical protein compare
AO353_00620 +0.8 2.1 cytochrome C oxidase Cbb3 compare
AO353_28295 +0.8 1.5 GNAT family acetyltransferase compare
AO353_27665 +0.8 4.3 arginyl-tRNA-protein transferase compare
AO353_13300 +0.7 1.6 LOG family protein compare
AO353_09545 +0.7 6.5 type VI secretion protein IcmF compare
AO353_24120 +0.7 1.4 hypothetical protein compare
AO353_08100 +0.7 2.3 chemotaxis protein CheY compare
AO353_17475 +0.7 2.8 hypothetical protein compare
AO353_23780 +0.7 2.2 hydroxyacid dehydrogenase compare
AO353_15460 +0.7 4.4 cytochrome o ubiquinol oxidase subunit III compare
AO353_26280 +0.7 1.9 peptidase M48, Ste24p compare
AO353_12720 +0.7 1.6 hypothetical protein compare
AO353_14940 +0.7 2.7 malate:quinone oxidoreductase compare
AO353_00820 +0.7 3.7 uroporphyrin-III methyltransferase compare
AO353_12365 +0.7 3.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_17985 +0.7 1.9 LysR family transcriptional regulator compare
AO353_02815 +0.7 3.2 transcriptional regulator compare
AO353_06430 +0.7 5.3 murein transglycosylase compare
AO353_24415 +0.7 1.9 glutamine ABC transporter ATP-binding protein compare
AO353_17375 +0.7 5.7 beta-D-glucoside glucohydrolase compare
AO353_25585 +0.7 1.3 argininosuccinate lyase compare
AO353_09555 +0.7 5.3 type VI secretion protein compare
AO353_08130 +0.7 1.6 uracil phosphoribosyltransferase compare
AO353_09045 +0.7 1.7 hypothetical protein compare
AO353_19140 +0.7 3.7 thiopurine S-methyltransferase compare
AO353_08210 +0.7 3.0 tRNA (guanine-N7)-methyltransferase compare


Specific Phenotypes

For 16 genes in this experiment

For stress Sodium perchlorate monohydrate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium perchlorate monohydrate across organisms