Experiment set3IT060 for Methanococcus maripaludis JJ

Compare to:

formate McAA p-aminobenzoic acid dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.6 -20.8 hypothetical protein compare
MMJJ_RS09375 -5.2 -2.9 hypothetical protein compare
MMJJ_RS06625 -5.2 -3.4 pyruvate synthase subunit PorB compare
MMJJ_RS04200 -5.1 -7.8 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05445 -5.0 -3.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03760 -4.6 -4.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06040 -4.6 -5.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS05450 -4.5 -15.6 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS01810 -4.5 -3.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06695 -4.5 -4.3 amidohydrolase compare
MMJJ_RS06875 -4.5 -4.0 hypothetical protein compare
MMJJ_RS01935 -4.4 -5.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06910 -4.2 -4.0 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS08625 -4.2 -6.9 magnesium/cobalt transporter CorA compare
MMJJ_RS03580 -4.1 -4.8 TIGR00303 family protein compare
MMJJ_RS01600 -4.1 -3.9 radical SAM protein compare
MMJJ_RS06240 -4.1 -4.6 dihydropteroate synthase-like protein compare
MMJJ_RS05575 -4.1 -5.6 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS02045 -4.0 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07665 -4.0 -24.0 formate dehydrogenase subunit alpha compare
MMJJ_RS08320 -4.0 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03820 -3.9 -5.3 hydrogenase formation protein HypD compare
MMJJ_RS05590 -3.9 -3.4 homoserine dehydrogenase compare
MMJJ_RS05260 -3.9 -8.2 ATP-grasp domain-containing protein compare
MMJJ_RS03895 -3.9 -5.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS05650 -3.9 -4.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS07670 -3.8 -17.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06490 -3.8 -4.5 methanogenesis marker 2 protein compare
MMJJ_RS04155 -3.8 -9.7 hypothetical protein compare
MMJJ_RS00570 -3.8 -2.6 ribonuclease P compare
MMJJ_RS04730 -3.8 -3.6 tyrosine decarboxylase MfnA compare
MMJJ_RS02275 -3.8 -6.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07360 -3.7 -2.6 TIGR00269 family protein compare
MMJJ_RS05930 -3.7 -3.3 cell division protein SepF compare
MMJJ_RS06855 -3.6 -2.9 DUF2104 domain-containing protein compare
MMJJ_RS08005 -3.6 -18.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07655 -3.6 -15.0 hypothetical protein compare
MMJJ_RS08660 -3.6 -4.2 acetylornithine transaminase compare
MMJJ_RS05535 -3.6 -16.6 hypothetical protein compare
MMJJ_RS00450 -3.6 -2.8 DUF126 domain-containing protein compare
MMJJ_RS00275 -3.6 -3.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03270 -3.5 -3.3 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06860 -3.5 -5.6 hypothetical protein compare
MMJJ_RS06725 -3.5 -14.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05620 -3.5 -5.2 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03095 -3.4 -3.3 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05610 -3.4 -5.6 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS00600 -3.4 -4.4 hydroxymethylbilane synthase compare
MMJJ_RS06255 -3.4 -8.1 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01360 -3.3 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06805 -3.3 -4.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06215 -3.3 -6.9 agmatinase compare
MMJJ_RS06225 -3.3 -3.1 adenosylmethionine decarboxylase compare
MMJJ_RS03840 -3.3 -5.3 DHH family phosphoesterase compare
MMJJ_RS03110 -3.2 -5.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00560 -3.2 -4.5 homoisocitrate dehydrogenase compare
MMJJ_RS04790 -3.2 -4.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06915 -3.2 -13.7 helix-turn-helix domain-containing protein compare
MMJJ_RS08020 -3.2 -8.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00215 -3.1 -3.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03200 -3.1 -3.6 uroporphyrinogen-III synthase compare
MMJJ_RS06250 -3.1 -3.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08000 -3.1 -11.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS04995 -3.1 -7.8 Tfx family DNA-binding protein compare
MMJJ_RS04050 -3.1 -2.2 dihydroneopterin aldolase family protein compare
MMJJ_RS01415 -3.1 -4.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06180 -3.0 -4.1 tryptophan--tRNA ligase compare
MMJJ_RS01880 -3.0 -3.9 RlmE family RNA methyltransferase compare
MMJJ_RS03065 -3.0 -12.9 CBS domain-containing protein compare
MMJJ_RS06905 -3.0 -3.3 hypothetical protein compare
MMJJ_RS03615 -3.0 -3.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS04675 -3.0 -7.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS02090 -3.0 -5.3 tyramine--L-glutamate ligase compare
MMJJ_RS08055 -3.0 -8.3 methanogenesis marker 14 protein compare
MMJJ_RS04685 -2.9 -11.2 carbamoyltransferase HypF compare
MMJJ_RS03150 -2.9 -6.8 2-phospho-L-lactate transferase compare
MMJJ_RS08250 -2.9 -8.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS05330 -2.9 -3.4 DNA polymerase II large subunit compare
MMJJ_RS00210 -2.9 -3.3 DUF530 family protein compare
MMJJ_RS05490 -2.9 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS01475 -2.9 -2.6 signal recognition particle-docking protein FtsY compare
MMJJ_RS06220 -2.9 -6.9 polyamine aminopropyltransferase compare
MMJJ_RS08080 -2.9 -9.0 TIGR00300 family protein compare
MMJJ_RS05070 -2.8 -2.5 DNA primase catalytic subunit PriS compare
MMJJ_RS02920 -2.8 -2.7 30S ribosomal protein S27ae compare
MMJJ_RS03785 -2.8 -3.6 hypothetical protein compare
MMJJ_RS01755 -2.8 -3.4 ferrous iron transport protein B compare
MMJJ_RS03620 -2.8 -7.0 DUF2097 domain-containing protein compare
MMJJ_RS04520 -2.8 -6.0 coenzyme F430 synthase compare
MMJJ_RS03875 -2.8 -6.0 CBS domain-containing protein compare
MMJJ_RS08855 -2.8 -5.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS06785 -2.8 -8.0 RNA ligase partner protein compare
MMJJ_RS03190 -2.7 -3.7 phosphopyruvate hydratase compare
MMJJ_RS03005 -2.7 -5.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03660 -2.7 -3.9 DUF447 family protein compare
MMJJ_RS07995 -2.7 -10.2 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS06155 -2.7 -6.9 phosphatidylglycerophosphatase A compare
MMJJ_RS03295 -2.7 -14.3 PHP domain-containing protein compare
MMJJ_RS05655 -2.7 -7.1 HisA/HisF family protein compare
MMJJ_RS03055 -2.6 -3.7 hypothetical protein compare
MMJJ_RS07705 -2.6 -4.2 GTP-binding protein EngB compare
MMJJ_RS07660 -2.6 -9.4 carbonic anhydrase compare
MMJJ_RS06110 -2.6 -3.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS03830 -2.6 -10.4 CBS domain-containing protein compare
MMJJ_RS04650 -2.6 -7.6 nitrogenase iron protein compare
MMJJ_RS03670 -2.6 -4.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06840 -2.6 -4.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS08095 -2.6 -5.6 cobyric acid synthase CobQ compare
MMJJ_RS06485 -2.6 -4.2 phosphoglycerate kinase compare
MMJJ_RS05995 -2.6 -3.7 ATP-binding cassette domain-containing protein compare
MMJJ_RS04485 -2.6 -11.3 riboflavin synthase compare
MMJJ_RS03800 -2.6 -10.8 aldolase compare
MMJJ_RS07380 -2.6 -8.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06390 -2.5 -3.0 NADPH-dependent F420 reductase compare
MMJJ_RS04800 -2.5 -6.1 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS04655 -2.5 -5.8 FAD-dependent oxidoreductase compare
MMJJ_RS00050 -2.5 -10.1 AAA family ATPase compare
MMJJ_RS00355 -2.5 -4.3 ribonuclease P protein component 4 compare
MMJJ_RS07635 -2.5 -14.0 response regulator transcription factor compare
MMJJ_RS07350 -2.5 -4.2 4Fe-4S binding protein compare
MMJJ_RS07950 -2.5 -3.1 4Fe-4S binding protein compare
MMJJ_RS01870 -2.5 -3.0 methanogenesis marker 15 protein compare
MMJJ_RS05190 -2.5 -7.8 gamma carbonic anhydrase family protein compare
MMJJ_RS03115 -2.5 -5.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06705 -2.5 -5.5 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07430 -2.5 -5.1 ribonuclease VapC compare
MMJJ_RS07155 -2.5 -9.3 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05935 -2.5 -3.3 Era-like GTP-binding protein compare
MMJJ_RS07640 -2.4 -19.6 cache domain-containing protein compare
MMJJ_RS03630 -2.4 -12.1 AMP phosphorylase compare
MMJJ_RS00580 -2.4 -2.1 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08340 -2.4 -4.4 archaeoflavoprotein AfpA compare
MMJJ_RS07355 -2.4 -5.8 MoaD/ThiS family protein compare
MMJJ_RS07190 -2.4 -4.6 RtcB family protein compare
MMJJ_RS05065 -2.4 -5.6 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01345 -2.4 -4.6 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00520 -2.4 -6.4 PDGLE domain-containing protein compare
MMJJ_RS06510 -2.3 -3.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS01565 -2.3 -7.6 TIGR00267 family protein compare
MMJJ_RS06375 -2.3 -4.3 UbiX family flavin prenyltransferase compare
MMJJ_RS07410 -2.3 -5.0 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS01405 -2.3 -1.4 proline--tRNA ligase compare
MMJJ_RS07245 -2.3 -6.0 amidohydrolase family protein compare
MMJJ_RS07725 -2.3 -6.3 DNA primase DnaG compare
MMJJ_RS06760 -2.2 -5.6 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS09190 -2.2 -2.9 tryptophan synthase subunit beta compare
MMJJ_RS06835 -2.2 -10.3 4Fe-4S binding protein compare
MMJJ_RS03815 -2.2 -3.0 nascent polypeptide-associated complex protein compare
MMJJ_RS08330 -2.2 -2.4 SufD family Fe-S cluster assembly protein compare
MMJJ_RS02055 -2.2 -11.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS07650 -2.2 -14.8 formate/nitrite transporter family protein compare
MMJJ_RS05375 -2.2 -14.2 radical SAM protein compare
MMJJ_RS00195 -2.2 -3.9 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS04975 -2.2 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS05950 -2.2 -3.7 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS07000 -2.1 -1.5 TrkH family potassium uptake protein compare
MMJJ_RS07275 -2.1 -3.6 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS03060 -2.1 -2.9 methanogenesis marker 7 protein compare
MMJJ_RS00475 -2.1 -2.3 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS00530 -2.1 -12.0 cobalt ECF transporter T component CbiQ compare
MMJJ_RS01865 -2.0 -6.6 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS00065 -2.0 -11.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06930 -2.0 -2.2 type II methionyl aminopeptidase compare
MMJJ_RS05720 -2.0 -2.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00045 -2.0 -12.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS00040 -1.9 -7.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00060 -1.9 -13.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00035 -1.9 -12.9 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS08870 -1.9 -1.6 2-isopropylmalate synthase compare
MMJJ_RS08535 -1.9 -3.4 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS07345 -1.9 -5.6 homocysteine biosynthesis protein compare
MMJJ_RS04615 -1.9 -3.6 methanogenesis marker 3 protein compare
MMJJ_RS04985 -1.9 -4.1 glutamyl-tRNA reductase compare
MMJJ_RS06050 -1.9 -8.2 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06865 -1.9 -2.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08065 -1.9 -2.6 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS05810 -1.9 -5.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00070 -1.9 -4.5 CooT family nickel-binding protein compare
MMJJ_RS07720 -1.9 -2.5 UPF0058 family protein compare
MMJJ_RS06380 -1.9 -3.6 signal recognition particle protein Srp54 compare
MMJJ_RS05295 -1.9 -8.2 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS04875 -1.9 -2.0 tRNA-Lys compare
MMJJ_RS00055 -1.9 -8.1 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00080 -1.9 -10.5 DUF166 domain-containing protein compare
MMJJ_RS08840 -1.9 -4.3 calcium/sodium antiporter compare
MMJJ_RS05225 -1.9 -2.1 Gar1/Naf1 family protein compare
MMJJ_RS03125 -1.8 -3.1 GMC oxidoreductase compare
MMJJ_RS00270 -1.8 -3.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04970 -1.8 -2.0 DUF655 domain-containing protein compare
MMJJ_RS04110 -1.8 -4.5 hypothetical protein compare
MMJJ_RS02935 -1.8 -3.6 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05155 -1.8 -6.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05540 -1.8 -13.3 LysR family transcriptional regulator compare
MMJJ_RS03500 -1.8 -11.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS08620 -1.8 -3.4 DUF373 family protein compare
MMJJ_RS06185 -1.8 -5.2 cobalamin biosynthesis protein compare
MMJJ_RS00075 -1.8 -9.0 AAA family ATPase compare
MMJJ_RS03160 -1.8 -11.7 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS00125 -1.8 -1.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS07785 -1.7 -2.4 fumarate reductase subunit A compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments