Experiment set3IT060 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
H281DRAFT_05621 -7.7 -4.8 glutamate synthase (NADH) small subunit compare
H281DRAFT_06060 -6.1 -7.3 amidophosphoribosyltransferase compare
H281DRAFT_03926 -5.5 -11.6 phosphoserine aminotransferase apoenzyme compare
H281DRAFT_04974 -5.5 -7.4 aromatic-amino-acid transaminase compare
H281DRAFT_04710 -5.5 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
H281DRAFT_04610 -5.5 -19.7 Fe-S oxidoreductase compare
H281DRAFT_00194 -5.3 -3.6 argininosuccinate lyase compare
H281DRAFT_02297 -5.1 -10.3 Cd2+/Zn2+-exporting ATPase compare
H281DRAFT_04278 -5.1 -8.7 6-phosphogluconate dehydratase compare
H281DRAFT_00909 -4.6 -5.4 phosphoribosylformylglycinamidine synthase compare
H281DRAFT_00860 -4.4 -2.1 phosphoserine phosphatase compare
H281DRAFT_05714 -4.4 -3.8 anthranilate synthase, component II compare
H281DRAFT_06067 -4.4 -14.6 tryptophan synthase, beta chain compare
H281DRAFT_05620 -4.3 -18.3 glutamate synthase (NADH) large subunit compare
H281DRAFT_00395 -4.1 -7.4 hydroxymethylpyrimidine synthase compare
H281DRAFT_04553 -4.0 -6.8 ketol-acid reductoisomerase compare
H281DRAFT_05801 -4.0 -6.6 5,10-methylenetetrahydrofolate reductase (NAD(P)) compare
H281DRAFT_06315 -3.8 -1.8 glyceraldehyde-3-phosphate dehydrogenase (NAD+) compare
H281DRAFT_06264 -3.8 -3.5 glutamate 5-kinase compare
H281DRAFT_05712 -3.7 -7.2 indole-3-glycerol phosphate synthase compare
H281DRAFT_04120 -3.5 -6.4 argininosuccinate synthase compare
H281DRAFT_00608 -3.5 -11.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
H281DRAFT_03925 -3.5 -7.2 chorismate mutase compare
H281DRAFT_00117 -3.4 -9.9 sulfate adenylyltransferase subunit 2 compare
H281DRAFT_06072 -3.4 -9.6 3-isopropylmalate dehydrogenase compare
H281DRAFT_06068 -3.3 -5.7 phosphoribosylanthranilate isomerase compare
H281DRAFT_04721 -3.3 -1.7 Cell division and transport-associated protein TolR compare
H281DRAFT_04082 -3.2 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
H281DRAFT_06059 -3.2 -8.8 O-succinylhomoserine sulfhydrylase compare
H281DRAFT_05713 -3.2 -7.0 anthranilate phosphoribosyltransferase compare
H281DRAFT_03023 -3.1 -1.9 Protein of unknown function (DUF2866) compare
H281DRAFT_02214 -3.1 -13.5 homoserine O-acetyltransferase compare
H281DRAFT_04679 -3.0 -4.4 pyrroline-5-carboxylate reductase compare
H281DRAFT_04722 -3.0 -5.0 Cell division and transport-associated protein TolQ compare
H281DRAFT_04119 -3.0 -4.8 ornithine carbamoyltransferase compare
H281DRAFT_00176 -3.0 -2.4 outer membrane lipoprotein carrier protein compare
H281DRAFT_02065 -3.0 -2.0 rfaE bifunctional protein, domain II compare
H281DRAFT_01935 -3.0 -8.4 Tetratricopeptide repeat-containing protein compare
H281DRAFT_02004 -3.0 -4.1 phosphoglycerate mutase compare
H281DRAFT_06238 -2.9 -2.0 hypothetical protein compare
H281DRAFT_00286 -2.8 -2.7 transaldolase compare
H281DRAFT_04719 -2.8 -4.1 TolB protein compare
H281DRAFT_00453 -2.7 -4.3 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL compare
H281DRAFT_00120 -2.7 -4.0 sirohydrochlorin cobaltochelatase compare
H281DRAFT_05715 -2.7 -14.7 anthranilate synthase, component I compare
H281DRAFT_06075 -2.5 -8.2 3-isopropylmalate dehydratase, large subunit compare
H281DRAFT_01927 -2.5 -13.0 RNA polymerase, sigma 54 subunit, RpoN/SigL compare
H281DRAFT_00114 -2.5 -4.5 sulfite reductase (NADPH) beta subunit compare
H281DRAFT_06266 -2.5 -4.5 putative (di)nucleoside polyphosphate hydrolase compare
H281DRAFT_00197 -2.4 -9.9 Phosphoenolpyruvate carboxylase, type 1 compare
H281DRAFT_00842 -2.4 -7.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
H281DRAFT_00118 -2.4 -4.6 sulfate adenylyltransferase subunit 1 compare
H281DRAFT_04302 -2.2 -2.2 molybdopterin adenylyltransferase compare
H281DRAFT_04337 -2.2 -4.2 molybdenum cofactor guanylyltransferase (EC 2.7.7.77) compare
H281DRAFT_00812 -2.2 -4.0 molybdopterin molybdotransferase compare
H281DRAFT_05494 -2.2 -1.6 DNA-binding transcriptional regulator, GntR family compare
H281DRAFT_00896 -2.1 -3.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
H281DRAFT_06073 -2.1 -3.3 3-isopropylmalate dehydratase, small subunit compare
H281DRAFT_00531 -2.1 -6.1 hypothetical protein compare
H281DRAFT_06322 -2.0 -2.5 LPS-assembly lipoprotein compare
H281DRAFT_04243 -2.0 -3.7 magnesium and cobalt transporter compare
H281DRAFT_00454 -2.0 -3.6 nitrogen metabolism transcriptional regulator, NtrC, Fis family compare
H281DRAFT_00116 -2.0 -1.4 phosphoadenylylsulfate reductase (thioredoxin) compare
H281DRAFT_00145 -2.0 -5.7 adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase compare
H281DRAFT_00139 -1.9 -4.2 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
H281DRAFT_04677 -1.9 -7.8 starvation-inducible DNA-binding protein compare
H281DRAFT_02201 -1.8 -3.5 hypothetical protein compare
H281DRAFT_06037 -1.8 -2.7 molybdate transport system substrate-binding protein compare
H281DRAFT_02859 -1.8 -5.9 precorrin-6A reductase (EC 1.3.1.54) compare
H281DRAFT_00664 -1.8 -5.6 assimilatory nitrate reductase (NADH) beta subunit (EC 1.7.1.1) compare
H281DRAFT_01640 -1.7 -6.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_06039 -1.7 -2.5 molybdate transport system ATP-binding protein compare
H281DRAFT_02670 -1.7 -3.2 transcriptional regulator, GntR family compare
H281DRAFT_02926 -1.7 -8.4 diguanylate cyclase/phosphodiesterase compare
H281DRAFT_05085 -1.6 -2.7 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
H281DRAFT_05087 -1.6 -1.6 exodeoxyribonuclease V alpha subunit compare
H281DRAFT_00506 -1.6 -1.4 Zn-dependent protease (includes SpoIVFB) compare
H281DRAFT_00143 -1.6 -4.3 L-threonine O-3-phosphate decarboxylase compare
H281DRAFT_04388 -1.5 -1.5 trehalose 6-phosphatase (EC 3.1.3.12) compare
H281DRAFT_02080 -1.5 -6.6 cell division protein FtsN compare
H281DRAFT_00146 -1.5 -3.9 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
H281DRAFT_03072 -1.4 -4.0 Signal transduction histidine kinase compare
H281DRAFT_02215 -1.4 -3.2 methionine biosynthesis protein MetW compare
H281DRAFT_06567 -1.4 -1.6 hypothetical protein compare
H281DRAFT_00140 -1.4 -3.4 cobalamin-5'-phosphate synthase compare
H281DRAFT_01584 -1.4 -1.4 enamidase compare
H281DRAFT_01464 -1.4 -2.9 Anti-sigma-K factor RskA compare
H281DRAFT_00141 -1.4 -3.8 alpha-ribazole phosphatase compare
H281DRAFT_06523 -1.4 -5.5 protoporphyrin IX magnesium-chelatase (EC 6.6.1.1) compare
H281DRAFT_01684 -1.4 -3.9 transcriptional regulator, TetR family compare
H281DRAFT_02860 -1.4 -5.9 cobalt-precorrin-5B (C1)-methyltransferase compare
H281DRAFT_04386 -1.4 -3.2 hypothetical protein compare
H281DRAFT_05281 -1.4 -1.6 triphosphoribosyl-dephospho-CoA synthase compare
H281DRAFT_00468 -1.4 -4.1 dihydrolipoamide dehydrogenase compare
H281DRAFT_05086 -1.3 -1.8 DNA helicase/exodeoxyribonuclease V, beta subunit compare
H281DRAFT_04970 -1.3 -1.0 high-affinity iron transporter compare
H281DRAFT_04515 -1.3 -2.0 RNAse G compare
H281DRAFT_06524 -1.3 -7.1 cobaltochelatase CobN subunit compare
H281DRAFT_00841 -1.3 -1.9 hypothetical protein compare
H281DRAFT_04635 -1.3 -2.2 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) compare
H281DRAFT_02866 -1.3 -5.3 precorrin-3 methyltransferase (EC 2.1.1.131) compare
H281DRAFT_02541 -1.3 -2.8 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33) compare
H281DRAFT_00665 -1.3 -3.9 assimilatory nitrate reductase (NADH) alpha subunit apoprotein (EC 1.7.1.1) compare
H281DRAFT_04552 -1.3 -3.4 acetolactate synthase, small subunit compare
H281DRAFT_06065 -1.3 -4.5 tryptophan synthase, alpha chain compare
H281DRAFT_01841 -1.3 -2.5 Asp/Glu/hydantoin racemase compare
H281DRAFT_00757 -1.3 -1.5 hypothetical protein compare
H281DRAFT_00165 -1.3 -3.5 glucose-6-phosphate 1-dehydrogenase compare
H281DRAFT_03519 -1.3 -2.2 hypothetical protein compare
H281DRAFT_06529 -1.2 -3.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
H281DRAFT_01914 -1.2 -4.1 Predicted PurR-regulated permease PerM compare
H281DRAFT_04064 -1.2 -2.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
H281DRAFT_06310 -1.2 -3.1 Barstar (barnase inhibitor) compare
H281DRAFT_04998 -1.2 -1.5 type III secretion protein T compare
H281DRAFT_04338 -1.2 -4.4 cyclic pyranopterin monophosphate synthase subunit MoaA compare
H281DRAFT_04968 -1.2 -1.9 Hemin uptake protein hemP compare
H281DRAFT_02612 -1.2 -4.2 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase compare
H281DRAFT_01798 -1.2 -1.7 Transmembrane transcriptional regulator (anti-sigma factor RsiW) compare
H281DRAFT_02863 -1.2 -3.0 precorrin-3B synthase compare
H281DRAFT_05116 -1.2 -4.2 cell division protein ZapE compare
H281DRAFT_06500 -1.1 -1.7 Lactate dehydrogenase compare
H281DRAFT_06521 -1.1 -1.3 magnesium chelatase subunit ChlD-like protein compare
H281DRAFT_04831 -1.1 -2.5 hypothetical protein compare
H281DRAFT_00444 -1.1 -1.5 N-acetylglutamate synthase compare
H281DRAFT_03863 -1.1 -1.2 D-alanyl-D-alanine carboxypeptidase compare
H281DRAFT_02137 -1.1 -3.0 type I restriction enzyme M protein compare
H281DRAFT_02864 -1.1 -3.9 precorrin-8X methylmutase compare
H281DRAFT_06031 -1.1 -2.5 transcriptional regulator, MarR family compare
H281DRAFT_03733 -1.1 -1.3 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_06295 -1.1 -2.7 2-keto-3-deoxy-phosphogalactonate aldolase compare
H281DRAFT_01880 -1.1 -1.8 two component transcriptional regulator, LuxR family compare
H281DRAFT_06074 -1.1 -2.7 entericidin A compare
H281DRAFT_06062 -1.1 -2.2 DedD protein compare
H281DRAFT_00465 -1.1 -3.2 PAS/PAC sensor signal transduction histidine kinase /multi-sensor signal transduction histidine kinase compare
H281DRAFT_01111 -1.1 -1.4 transcriptional regulator, DeoR family compare
H281DRAFT_03572 -1.1 -1.5 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_03981 -1.1 -3.1 Uncharacterized membrane protein compare
H281DRAFT_04788 -1.1 -1.7 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_00840 -1.1 -3.6 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase compare
H281DRAFT_01865 -1.1 -1.9 hypothetical protein compare
H281DRAFT_00115 -1.0 -1.7 Uncharacterized conserved protein, DUF934 family compare
H281DRAFT_05267 -1.0 -3.0 3-hydroxypropanoate dehydrogenase compare
H281DRAFT_00663 -1.0 -1.9 assimilatory nitrite reductase (NAD(P)H) small subunit (EC 1.7.1.4) compare
H281DRAFT_04934 -1.0 -1.4 Sensors of blue-light using FAD compare
H281DRAFT_03428 -1.0 -2.3 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
H281DRAFT_03050 -1.0 -2.9 Mannose-6-phosphate isomerase, cupin superfamily compare
H281DRAFT_05213 -1.0 -2.1 gluconate 2-dehydrogenase compare
H281DRAFT_01894 -1.0 -1.0 transcriptional regulator, MarR family compare
H281DRAFT_01229 -1.0 -1.6 Sugar phosphate permease compare
H281DRAFT_05021 -1.0 -1.5 Response regulator compare
H281DRAFT_03409 -1.0 -1.3 Protein of unknown function (DUF3072) compare
H281DRAFT_01984 -1.0 -5.0 protein SCO1/2 compare
H281DRAFT_03475 -1.0 -1.8 hypothetical protein compare
H281DRAFT_00902 -1.0 -4.1 peptidyl-prolyl cis-trans isomerase D compare
H281DRAFT_01257 -1.0 -1.7 Catechol 2,3-dioxygenase compare
H281DRAFT_04639 -1.0 -2.6 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
H281DRAFT_01837 -1.0 -1.3 hypothetical protein compare
H281DRAFT_05389 -1.0 -1.2 protein of unknown function (DUF3331) compare
H281DRAFT_00138 -1.0 -3.7 iron complex transport system ATP-binding protein compare
H281DRAFT_04922 -1.0 -2.5 iron complex transport system permease protein compare
H281DRAFT_05332 -1.0 -3.0 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_01599 -1.0 -1.4 GTP cyclohydrolase I compare
H281DRAFT_00796 -1.0 -3.1 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_02865 -1.0 -4.3 precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase compare
H281DRAFT_00175 -0.9 -2.0 DNA translocase FtsK compare
H281DRAFT_00199 -0.9 -1.3 uroporphyrinogen III methyltransferase / synthase compare
H281DRAFT_00627 -0.9 -3.2 phosphoenolpyruvate synthase compare
H281DRAFT_05534 -0.9 -2.2 Zn-dependent dipeptidase, dipeptidase homolog compare
H281DRAFT_00888 -0.9 -2.0 phytoene synthase compare
H281DRAFT_01388 -0.9 -3.3 Uncharacterized conserved protein, DUF2252 family compare
H281DRAFT_01889 -0.9 -1.7 7-cyano-7-deazaguanine reductase compare
H281DRAFT_03328 -0.9 -1.9 hypothetical protein compare
H281DRAFT_04362 -0.9 -1.4 RNAse III (EC 3.1.26.3) compare
H281DRAFT_05827 -0.9 -1.9 hypothetical protein compare
H281DRAFT_06120 -0.9 -1.0 hypothetical protein compare
H281DRAFT_04654 -0.9 -1.2 NAD(P) transhydrogenase subunit alpha compare
H281DRAFT_03118 -0.9 -1.1 NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase compare
H281DRAFT_04606 -0.9 -0.8 threonine ammonia-lyase, biosynthetic, long form compare
H281DRAFT_04342 -0.9 -1.9 Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase compare
H281DRAFT_04971 -0.9 -2.9 Predicted periplasmic lipoprotein involved in iron transport compare
H281DRAFT_00919 -0.9 -1.6 hypothetical protein compare
H281DRAFT_01821 -0.9 -1.2 Predicted lipid-binding transport protein, Tim44 family compare
H281DRAFT_04673 -0.9 -3.0 transcriptional regulator, LysR family compare
H281DRAFT_00298 -0.9 -1.4 hypothetical protein compare
H281DRAFT_04924 -0.9 -2.0 iron complex outermembrane recepter protein compare
H281DRAFT_04087 -0.9 -1.1 hypothetical protein compare
H281DRAFT_05090 -0.9 -2.2 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
H281DRAFT_01878 -0.9 -1.9 membrane fusion protein, multidrug efflux system compare
H281DRAFT_01163 -0.8 -2.7 hypothetical protein compare
H281DRAFT_02890 -0.8 -1.5 peroxiredoxin (alkyl hydroperoxide reductase subunit C) compare
H281DRAFT_06272 -0.8 -0.8 uncharacterized protein compare
H281DRAFT_01799 -0.8 -1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
H281DRAFT_00090 -0.8 -3.2 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
H281DRAFT_01244 -0.8 -1.1 Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain compare
H281DRAFT_03367 -0.8 -1.3 electron transfer flavoprotein alpha subunit apoprotein compare
H281DRAFT_01761 -0.8 -2.2 conserved domain-containing protein compare
H281DRAFT_03931 -0.8 -1.9 phosphoglycolate phosphatase compare
H281DRAFT_03610 -0.8 -1.5 squalene-hopene/tetraprenyl-beta-curcumene cyclase compare
H281DRAFT_01246 -0.8 -1.0 hypothetical protein compare
H281DRAFT_02369 -0.8 -2.2 Protein of unknown function (DUF3717) compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Paraburkholderia bryophila 376MFSha3.1

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms