Experiment set3IT059 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium Chlorite 0.16 mM

200 most important genes:

  gene name fitness t score description  
AO353_22685 -3.0 -3.5 peroxidase compare
AO353_20565 -2.9 -2.8 tRNA-Ala compare
AO353_13160 -2.8 -3.3 membrane protease HflC compare
AO353_12500 -2.7 -2.6 shikimate kinase compare
AO353_16805 -2.4 -6.3 recombinase RecA compare
AO353_13925 -2.4 -3.2 XRE family transcriptional regulator compare
AO353_14150 -2.3 -2.6 peptidylprolyl isomerase compare
AO353_10320 -2.2 -3.0 hypothetical protein compare
AO353_03710 -2.2 -3.9 formyltetrahydrofolate deformylase compare
AO353_06040 -2.2 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_02250 -2.1 -3.7 chorismate synthase compare
AO353_16940 -2.1 -5.7 deoxycytidine triphosphate deaminase compare
AO353_27720 -2.0 -5.5 cupin compare
AO353_07355 -2.0 -6.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_03590 -1.8 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_09890 -1.8 -5.3 phosphate ABC transporter ATP-binding protein compare
AO353_00825 -1.8 -3.9 porin compare
AO353_03585 -1.8 -3.3 ATP-dependent DNA helicase RuvA compare
AO353_10670 -1.8 -6.9 shikimate dehydrogenase compare
AO353_07075 -1.7 -5.0 elongation factor Tu compare
AO353_11770 -1.7 -2.2 molecular chaperone Hsp33 compare
AO353_07315 -1.7 -2.6 rRNA methyltransferase compare
AO353_12105 -1.6 -5.8 peptidase S41 compare
AO353_03580 -1.6 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_18540 -1.6 -2.7 pseudouridine synthase compare
AO353_27000 -1.6 -2.1 hypothetical protein compare
AO353_02070 -1.6 -6.4 prephenate dehydratase compare
AO353_09040 -1.6 -1.9 diaminopimelate epimerase compare
AO353_06050 -1.5 -6.0 exodeoxyribonuclease V subunit gamma compare
AO353_06045 -1.5 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_03615 -1.5 -3.0 cold-shock protein compare
AO353_00430 -1.5 -3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03815 -1.4 -1.8 heme utilization protein compare
AO353_09000 -1.4 -4.7 argininosuccinate lyase compare
AO353_10455 -1.4 -2.3 tRNA modification GTPase MnmE compare
AO353_18555 -1.4 -9.3 aromatic amino acid transporter compare
AO353_07155 -1.4 -5.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14775 -1.4 -5.0 hypothetical protein compare
AO353_18585 -1.4 -7.9 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) conserved
AO353_09745 -1.4 -2.0 hypothetical protein compare
AO353_00460 -1.4 -2.9 TetR family transcriptional regulator compare
AO353_20170 -1.3 -4.2 trigger factor compare
AO353_11730 -1.3 -7.0 glutamate--cysteine ligase compare
AO353_24745 -1.3 -2.6 hypothetical protein compare
AO353_22500 -1.3 -2.0 hypothetical protein compare
AO353_08165 -1.3 -2.9 pyrroline-5-carboxylate reductase compare
AO353_09240 -1.3 -3.0 acetylglutamate kinase compare
AO353_04175 -1.2 -3.7 glycerol uptake facilitator GlpF compare
AO353_03715 -1.2 -2.3 H-NS histone compare
AO353_10930 -1.2 -5.9 DNA polymerase I compare
AO353_04500 -1.2 -2.1 DNA repair protein RecO compare
AO353_04355 -1.2 -1.7 homoserine dehydrogenase compare
AO353_05625 -1.2 -1.4 transcription elongation factor GreA compare
AO353_15470 -1.1 -7.9 protoheme IX farnesyltransferase compare
AO353_13685 -1.1 -3.8 3-dehydroquinate dehydratase compare
AO353_12790 -1.1 -2.2 hypothetical protein compare
AO353_08600 -1.1 -3.0 TetR family transcriptional regulator compare
AO353_19280 -1.1 -2.1 hypothetical protein compare
AO353_04520 -1.1 -4.3 elongation factor 4 compare
AO353_19530 -1.1 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_07325 -1.1 -2.0 diadenosine tetraphosphatase compare
AO353_26285 -1.1 -1.8 hypothetical protein compare
AO353_01795 -1.1 -2.4 hypothetical protein compare
AO353_22475 -1.1 -2.7 alkaline phosphatase compare
AO353_13100 -1.1 -1.4 GTPase RsgA compare
AO353_06325 -1.1 -2.2 hypothetical protein compare
AO353_07210 -1.1 -4.0 indole-3-glycerol-phosphate synthase compare
AO353_06495 -1.1 -3.7 gamma-glutamyl phosphate reductase compare
AO353_01410 -1.0 -2.9 ribonuclease E compare
AO353_08685 -1.0 -5.2 N-acetylglutamate synthase compare
AO353_11165 -1.0 -5.5 hypothetical protein compare
AO353_12270 -1.0 -3.0 histidine ammonia-lyase compare
AO353_12935 -1.0 -2.7 glycosyltransferase compare
AO353_09900 -1.0 -6.9 phosphate ABC transporter permease compare
AO353_09320 -1.0 -5.8 ATP-dependent DNA helicase RecG compare
AO353_04365 -1.0 -3.8 recombinase XerD compare
AO353_01975 -1.0 -4.7 glycosyl transferase compare
AO353_16495 -1.0 -3.9 zinc metallopeptidase RseP compare
AO353_09050 -1.0 -2.7 recombinase XerC compare
AO353_09905 -1.0 -5.6 phosphate-binding protein compare
AO353_22920 -1.0 -3.5 GntR family transcriptional regulator compare
AO353_19605 -1.0 -2.1 hypothetical protein compare
AO353_01190 -1.0 -1.6 hypothetical protein compare
AO353_02060 -1.0 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_25585 -1.0 -1.7 argininosuccinate lyase compare
AO353_15460 -1.0 -4.8 cytochrome o ubiquinol oxidase subunit III compare
AO353_08115 -1.0 -3.8 energy transducer TonB compare
AO353_21625 -1.0 -1.7 Fe/S biogenesis protein NfuA compare
AO353_16740 -1.0 -2.4 phage tail protein compare
AO353_19295 -0.9 -1.9 hypothetical protein compare
AO353_15455 -0.9 -7.1 cytochrome o ubiquinol oxidase subunit I compare
AO353_02000 -0.9 -2.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_15185 -0.9 -3.4 ATPase compare
AO353_27925 -0.9 -2.2 hypothetical protein compare
AO353_12930 -0.9 -2.6 GlcNAc-PI de-N-acetylase compare
AO353_02590 -0.9 -2.7 MarR family transcriptional regulator compare
AO353_13225 -0.9 -1.7 50S ribosomal protein L9 compare
AO353_00265 -0.9 -2.4 hypothetical protein compare
AO353_05535 -0.9 -2.4 tRNA-Thr compare
AO353_13580 -0.9 -2.6 copper resistance protein CopZ compare
AO353_27650 -0.9 -2.9 cell division protein FtsK compare
AO353_28425 -0.9 -2.5 TetR family transcriptional regulator compare
AO353_01275 -0.9 -2.9 hypothetical protein compare
AO353_02015 -0.9 -4.1 acetyltransferase compare
AO353_27500 -0.9 -1.9 hypothetical protein compare
AO353_03670 -0.9 -2.9 ornithine acetyltransferase compare
AO353_07895 -0.9 -2.1 fructose-bisphosphate aldolase compare
AO353_26810 -0.9 -2.7 (2Fe-2S)-binding protein compare
AO353_00185 -0.9 -1.8 phage tail protein compare
AO353_10055 -0.8 -5.8 DNA helicase II compare
AO353_14495 -0.8 -5.5 acetolactate synthase 3 catalytic subunit compare
AO353_09315 -0.8 -4.6 LysR family transcriptional regulator compare
AO353_09250 -0.8 -2.1 exodeoxyribonuclease III compare
AO353_05690 -0.8 -2.1 SsrA-binding protein compare
AO353_02005 -0.8 -1.1 hypothetical protein compare
AO353_12395 -0.8 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_06720 -0.8 -1.6 NrdR family transcriptional regulator compare
AO353_20185 -0.8 -3.2 DNA-binding protein compare
AO353_08110 -0.8 -3.6 glutathione synthetase compare
AO353_08875 -0.8 -1.0 amino acid ABC transporter ATP-binding protein compare
AO353_15900 -0.8 -1.7 GTP-binding protein compare
AO353_09720 -0.8 -1.0 hypothetical protein compare
AO353_14940 -0.8 -2.3 malate:quinone oxidoreductase compare
AO353_12420 -0.8 -2.2 predicted FeS cluster maintenance protein (from data) compare
AO353_28555 -0.8 -1.0 LysR family transcriptional regulator compare
AO353_05880 -0.8 -1.4 plasmid stabilization protein compare
AO353_14420 -0.8 -2.0 molecular chaperone DnaK compare
AO353_09060 -0.8 -1.8 hypothetical protein compare
AO353_14740 -0.7 -2.2 GTP-binding protein compare
AO353_09235 -0.7 -3.5 phosphoglucomutase compare
AO353_18560 -0.7 -1.0 class I peptide chain release factor compare
AO353_19195 -0.7 -2.3 response regulator compare
AO353_19000 -0.7 -1.1 ABC transporter compare
AO353_12915 -0.7 -3.4 carbamoyltransferase compare
AO353_14395 -0.7 -2.2 poly(A) polymerase compare
AO353_22800 -0.7 -1.9 sulfite reductase compare
AO353_10435 -0.7 -3.8 chromosome partitioning protein compare
AO353_26440 -0.7 -2.3 hypothetical protein compare
AO353_28930 -0.7 -1.7 hypothetical protein compare
AO353_27300 -0.7 -3.9 phage tail protein compare
AO353_18425 -0.7 -2.5 hypothetical protein compare
AO353_23495 -0.7 -1.3 SAM-dependent methyltransferase compare
AO353_20115 -0.7 -2.4 LysR family transcriptional regulator compare
AO353_07900 -0.7 -2.1 hypothetical protein compare
AO353_12115 -0.7 -1.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_23715 -0.7 -3.6 hypothetical protein compare
AO353_21290 -0.7 -1.8 hypothetical protein compare
AO353_24760 -0.7 -1.5 glutamine amidotransferase compare
AO353_27685 -0.7 -2.5 cold-shock protein compare
AO353_01520 -0.7 -2.0 hypothetical protein compare
AO353_09895 -0.7 -3.6 phosphate ABC transporter permease compare
AO353_27090 -0.7 -1.1 hypothetical protein compare
AO353_01995 -0.7 -4.8 hypothetical protein compare
AO353_15050 -0.7 -2.0 nitrate transport permease nrtB compare
AO353_15490 -0.7 -0.9 hypothetical protein compare
AO353_03130 -0.7 -1.9 hypothetical protein compare
AO353_06850 -0.7 -2.3 MFS transporter compare
AO353_03515 -0.6 -0.9 cold-shock protein compare
AO353_08880 -0.6 -1.5 exopolyphosphatase compare
AO353_18590 -0.6 -4.0 AAA family ATPase compare
AO353_16885 -0.6 -2.9 hypothetical protein compare
AO353_28700 -0.6 -1.6 hypothetical protein compare
AO353_14935 -0.6 -2.2 aminopeptidase compare
AO353_23285 -0.6 -1.2 hypothetical protein compare
AO353_13150 -0.6 -3.9 GTPase HflX compare
AO353_11920 -0.6 -1.7 hypothetical protein compare
AO353_02775 -0.6 -2.5 3-methyladenine DNA glycosylase compare
AO353_24610 -0.6 -2.5 hypothetical protein compare
AO353_12895 -0.6 -2.3 lipopolysaccharide kinase compare
AO353_21830 -0.6 -4.4 chemotaxis protein CheY compare
AO353_12940 -0.6 -3.5 glycosyl transferase compare
AO353_20495 -0.6 -1.1 NUDIX hydrolase compare
AO353_12140 -0.6 -2.8 hypothetical protein compare
AO353_03100 -0.6 -1.3 XRE family transcriptional regulator compare
AO353_25160 -0.6 -2.0 ABC transporter substrate-binding protein compare
AO353_28055 -0.6 -1.1 hypothetical protein compare
AO353_25335 -0.6 -0.8 malonate decarboxylase acyl carrier protein compare
AO353_05420 -0.6 -1.2 peptide chain release factor 3 compare
AO353_21640 -0.6 -1.5 cobalt transporter compare
AO353_23315 -0.6 -1.8 hypothetical protein compare
AO353_08265 -0.6 -2.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_12535 -0.6 -1.9 hypothetical protein compare
AO353_19095 -0.6 -2.9 hypothetical protein compare
AO353_21645 -0.6 -1.7 cobalt transporter compare
AO353_20300 -0.6 -3.7 anti-sigma factor compare
AO353_23085 -0.6 -2.4 AraC family transcriptional regulator compare
AO353_25405 -0.6 -2.0 molybdenum cofactor biosynthesis protein B compare
AO353_17475 -0.6 -2.7 hypothetical protein compare
AO353_13120 -0.6 -2.5 carbohydrate kinase compare
AO353_15555 -0.6 -2.2 fumarylacetoacetase compare
AO353_02320 -0.6 -3.0 allantoinase compare
AO353_29020 -0.6 -2.4 amidohydrolase compare
AO353_24765 -0.6 -2.2 GCN5 family acetyltransferase compare
AO353_14440 -0.6 -2.3 ABC transporter substrate-binding protein compare
AO353_15465 -0.6 -2.5 cytochrome C oxidase compare
AO353_21030 -0.6 -1.9 hypothetical protein compare
AO353_26950 -0.6 -2.1 hypothetical protein compare
AO353_18780 -0.6 -3.0 cobyrinic acid a,c-diamide synthase compare
AO353_19840 -0.6 -1.7 hypothetical protein compare
AO353_12225 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chlorite in Pseudomonas fluorescens FW300-N2E3

For stress Sodium Chlorite across organisms