Experiment set3IT059 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Growth with no stress

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.8 -5.7 S41 family peptidase compare
PFLU_RS03645 -5.5 -12.8 tetratricopeptide repeat protein compare
PFLU_RS28695 -4.6 -6.3 phosphoglycerate dehydrogenase compare
PFLU_RS26545 -4.2 -13.8 sel1 repeat family protein compare
PFLU_RS02490 -4.1 -11.7 phosphoserine phosphatase SerB compare
PFLU_RS29885 -3.9 -12.2 LysR family transcriptional regulator compare
PFLU_RS24125 -3.9 -4.6 cold-shock protein compare
PFLU_RS23590 -3.9 -2.9 gluconokinase compare
PFLU_RS25760 -3.8 -12.6 glucose-6-phosphate isomerase compare
PFLU_RS29875 -3.6 -16.1 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS12975 -3.6 -5.4 DUF934 domain-containing protein compare
PFLU_RS29095 -3.5 -24.5 polyphosphate kinase 1 compare
PFLU_RS22595 -3.5 -2.4 OmpA family protein compare
PFLU_RS23585 -3.5 -9.2 GntP family permease compare
PFLU_RS22105 -3.5 -5.2 cysteine synthase CysM compare
PFLU_RS01625 -3.4 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22095 -3.4 -20.2 GTP diphosphokinase compare
PFLU_RS22070 -3.4 -5.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS25755 -3.3 -3.2 pantoate--beta-alanine ligase compare
PFLU_RS29880 -3.3 -14.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS18505 -3.2 -10.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23070 -3.2 -1.9 50S ribosomal protein L32 compare
PFLU_RS22740 -3.1 -5.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS09055 -3.1 -2.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25750 -3.1 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS20690 -3.0 -5.5 hypothetical protein compare
PFLU_RS24485 -3.0 -14.3 hypothetical protein compare
PFLU_RS04070 -2.9 -5.8 peptide chain release factor 3 compare
PFLU_RS23065 -2.9 -10.5 phosphate acyltransferase PlsX compare
PFLU_RS25735 -2.9 -8.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS14550 -2.9 -9.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS00175 -2.8 -8.5 tryptophan synthase subunit alpha compare
PFLU_RS26640 -2.7 -10.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS25815 -2.7 -2.6 transcription termination/antitermination protein NusA compare
PFLU_RS12980 -2.7 -10.2 nitrite/sulfite reductase compare
PFLU_RS28195 -2.7 -15.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS23725 -2.7 -13.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS21300 -2.7 -6.3 cysteine hydrolase compare
PFLU_RS04415 -2.6 -4.7 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS23310 -2.6 -9.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03970 -2.6 -10.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27365 -2.6 -10.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28535 -2.6 -15.2 dihydroxy-acid dehydratase compare
PFLU_RS01620 -2.6 -9.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28165 -2.6 -12.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27640 -2.6 -3.0 alpha/beta fold hydrolase compare
PFLU_RS01605 -2.6 -9.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS06055 -2.5 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS00180 -2.5 -8.4 tryptophan synthase subunit beta compare
PFLU_RS25640 -2.5 -12.1 ketol-acid reductoisomerase compare
PFLU_RS24330 -2.5 -7.1 phosphogluconate dehydratase compare
PFLU_RS28655 -2.5 -13.5 HAD family hydrolase compare
PFLU_RS17950 -2.5 -2.0 hypothetical protein compare
PFLU_RS20540 -2.4 -11.5 phosphoribosylanthranilate isomerase compare
PFLU_RS04660 -2.4 -6.1 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS23305 -2.4 -10.8 arginine N-succinyltransferase compare
PFLU_RS31290 -2.4 -2.3 EamA family transporter compare
PFLU_RS20515 -2.4 -3.6 amidophosphoribosyltransferase compare
PFLU_RS13540 -2.4 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS02365 -2.4 -12.4 glycosyltransferase compare
PFLU_RS27645 -2.3 -13.5 8-amino-7-oxononanoate synthase compare
PFLU_RS29065 -2.3 -1.4 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29515 -2.3 -10.5 RidA family protein compare
PFLU_RS18530 -2.3 -4.8 DNA translocase FtsK compare
PFLU_RS27635 -2.3 -8.9 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS08505 -2.3 -7.8 protease HtpX compare
PFLU_RS27370 -2.3 -11.7 anthranilate phosphoribosyltransferase compare
PFLU_RS27650 -2.2 -13.2 biotin synthase BioB compare
PFLU_RS20520 -2.2 -9.7 colicin V production protein CvpA compare
PFLU_RS21495 -2.2 -3.8 TlpA family protein disulfide reductase compare
PFLU_RS03770 -2.2 -11.7 sulfate adenylyltransferase subunit CysN compare
PFLU_RS08155 -2.2 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04445 -2.1 -6.8 ABC transporter substrate-binding protein compare
PFLU_RS00415 -2.1 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25920 -2.1 -3.9 outer membrane protein assembly factor BamE compare
PFLU_RS31800 -2.1 -2.2 hypothetical protein compare
PFLU_RS23920 -2.0 -2.5 septation protein A compare
PFLU_RS01960 -2.0 -1.4 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS24095 -2.0 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS01895 -2.0 -4.9 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01485 -2.0 -10.8 cellulase compare
PFLU_RS04465 -1.9 -8.6 ATP phosphoribosyltransferase compare
PFLU_RS07695 -1.9 -3.7 beta-N-acetylhexosaminidase compare
PFLU_RS04470 -1.9 -9.0 histidinol dehydrogenase compare
PFLU_RS20580 -1.9 -9.5 3-isopropylmalate dehydratase large subunit compare
PFLU_RS07785 -1.9 -10.3 VacJ family lipoprotein compare
PFLU_RS04430 -1.9 -7.6 ATP-binding cassette domain-containing protein compare
PFLU_RS24090 -1.8 -2.7 Holliday junction branch migration protein RuvA compare
PFLU_RS26770 -1.8 -10.4 DedA family protein compare
PFLU_RS08160 -1.8 -7.8 sugar transferase compare
PFLU_RS24025 -1.8 -8.9 quinolinate synthase NadA compare
PFLU_RS24335 -1.8 -10.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS02590 -1.8 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS05250 -1.8 -4.4 elongation factor 4 compare
PFLU_RS09980 -1.7 -12.4 peptidase S41 compare
PFLU_RS04385 -1.7 -9.5 RNase adapter RapZ compare
PFLU_RS04440 -1.7 -8.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS27630 -1.7 -5.4 dethiobiotin synthase compare
PFLU_RS24085 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS25585 -1.7 -1.2 exodeoxyribonuclease V subunit alpha compare
PFLU_RS18725 -1.7 -2.1 alpha/beta hydrolase compare
PFLU_RS30160 -1.7 -3.4 ParB/RepB/Spo0J family partition protein compare
PFLU_RS29275 -1.7 -5.6 DUF484 family protein compare
PFLU_RS14820 -1.7 -4.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS01900 -1.7 -7.2 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS25225 -1.7 -8.9 disulfide bond formation protein B compare
PFLU_RS20575 -1.7 -4.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25730 -1.6 -11.4 PAS domain S-box protein compare
PFLU_RS27440 -1.6 -5.8 nucleotidyltransferase family protein compare
PFLU_RS03765 -1.6 -7.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS30165 -1.6 -7.4 ParA family protein compare
PFLU_RS20565 -1.6 -10.1 3-isopropylmalate dehydrogenase compare
PFLU_RS05385 -1.6 -10.6 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS06555 -1.6 -8.2 OmpA family protein compare
PFLU_RS20015 -1.5 -2.9 transporter compare
PFLU_RS23185 -1.5 -9.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS07805 -1.5 -11.1 transaldolase compare
PFLU_RS08065 -1.5 -6.5 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS24765 -1.5 -11.3 2-isopropylmalate synthase compare
PFLU_RS07225 -1.5 -10.6 L-aspartate oxidase compare
PFLU_RS03250 -1.5 -2.4 heavy-metal-associated domain-containing protein compare
PFLU_RS25715 -1.5 -8.2 RNA polymerase-binding protein DksA compare
PFLU_RS15410 -1.5 -2.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28650 -1.5 -4.8 RNA pyrophosphohydrolase compare
PFLU_RS21060 -1.5 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS13350 -1.5 -1.9 ParD-like family protein compare
PFLU_RS04325 -1.5 -10.6 ribonuclease G compare
PFLU_RS26735 -1.5 -6.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS19170 -1.5 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS28385 -1.5 -8.4 homoserine O-acetyltransferase compare
PFLU_RS26905 -1.4 -7.6 transcriptional regulator NrdR compare
PFLU_RS04435 -1.4 -5.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS21645 -1.4 -7.0 chemotaxis protein CheA compare
PFLU_RS04715 -1.4 -4.4 D-alanine--D-alanine ligase compare
PFLU_RS01610 -1.4 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS05690 -1.4 -0.9 Grx4 family monothiol glutaredoxin compare
PFLU_RS27265 -1.4 -2.5 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS20510 -1.4 -8.3 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28645 -1.4 -8.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS05885 -1.4 -4.4 recombinase RecA compare
PFLU_RS08350 -1.4 -2.0 ABC transporter ATP-binding protein compare
PFLU_RS13715 -1.3 -1.4 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS26595 -1.3 -1.5 lipoprotein compare
PFLU_RS15910 -1.3 -1.7 homoprotocatechuate degradation operon regulator HpaR compare
PFLU_RS01315 -1.3 -1.9 Hsp33 family molecular chaperone HslO compare
PFLU_RS31100 -1.3 -3.5 preprotein translocase subunit SecG compare
PFLU_RS29280 -1.3 -5.7 tyrosine recombinase XerC compare
PFLU_RS00190 -1.3 -2.1 DUF883 domain-containing protein compare
PFLU_RS04650 -1.3 -9.6 ABC transporter substrate-binding protein compare
PFLU_RS25595 -1.3 -1.4 exodeoxyribonuclease V subunit gamma compare
PFLU_RS26290 -1.3 -0.9 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS28325 -1.2 -5.6 energy transducer TonB compare
PFLU_RS31065 -1.2 -2.4 helix-turn-helix domain-containing protein compare
PFLU_RS14805 -1.2 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS06320 -1.2 -2.1 OmpH family outer membrane protein compare
PFLU_RS19175 -1.2 -5.9 trigger factor compare
PFLU_RS11980 -1.2 -4.7 precorrin-6A synthase (deacetylating) compare
PFLU_RS07665 -1.2 -1.4 type I DNA topoisomerase compare
PFLU_RS24255 -1.2 -6.8 pyruvate kinase compare
PFLU_RS04220 -1.2 -5.4 FadR family transcriptional regulator compare
PFLU_RS22010 -1.2 -5.1 threonine-phosphate decarboxylase compare
PFLU_RS22390 -1.2 -2.8 hypothetical protein compare
PFLU_RS28390 -1.2 -5.0 methionine biosynthesis protein MetW compare
PFLU_RS01320 -1.2 -6.1 phosphoenolpyruvate carboxykinase compare
PFLU_RS02975 -1.2 -5.8 precorrin-3B synthase compare
PFLU_RS28320 -1.2 -1.7 glutathione synthase compare
PFLU_RS29490 -1.2 -6.1 ribonuclease PH compare
PFLU_RS27620 -1.2 -9.1 acyl-CoA dehydrogenase compare
PFLU_RS18005 -1.2 -2.9 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS30790 -1.2 -2.2 hypothetical protein compare
PFLU_RS16390 -1.2 -0.8 DUF411 domain-containing protein compare
PFLU_RS15610 -1.2 -3.9 helix-turn-helix transcriptional regulator compare
PFLU_RS13365 -1.1 -1.6 hypothetical protein compare
PFLU_RS24790 -1.1 -3.7 tetratricopeptide repeat protein compare
PFLU_RS24560 -1.1 -5.7 site-specific tyrosine recombinase XerD compare
PFLU_RS02370 -1.1 -6.0 glycosyltransferase compare
PFLU_RS25360 -1.1 -4.6 glutamate 5-kinase compare
PFLU_RS01965 -1.1 -1.4 ATP-dependent protease subunit HslV compare
PFLU_RS02460 -1.1 -7.2 alpha/beta fold hydrolase compare
PFLU_RS09720 -1.1 -1.6 single-stranded DNA-binding protein compare
PFLU_RS14335 -1.1 -1.8 ABC transporter permease compare
PFLU_RS28965 -1.1 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS18655 -1.1 -2.0 NADH-quinone oxidoreductase subunit J compare
PFLU_RS18615 -1.1 -1.7 NADH-quinone oxidoreductase subunit A compare
PFLU_RS21575 -1.1 -2.2 pyrimidine/purine nucleoside phosphorylase compare
PFLU_RS31215 -1.1 -1.8 hypothetical protein compare
PFLU_RS18675 -1.1 -2.1 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS27910 -1.1 -0.9 helix-turn-helix transcriptional regulator compare
PFLU_RS15165 -1.1 -1.9 RidA family protein compare
PFLU_RS18420 -1.1 -1.4 hypothetical protein compare
PFLU_RS25645 -1.1 -1.2 acetolactate synthase small subunit compare
PFLU_RS07650 -1.1 -6.9 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS18015 -1.1 -2.6 energy transducer TonB compare
PFLU_RS25740 -1.1 -3.8 polynucleotide adenylyltransferase PcnB compare
PFLU_RS10430 -1.1 -2.4 peptidase compare
PFLU_RS05780 -1.0 -6.3 helix-turn-helix transcriptional regulator compare
PFLU_RS24785 -1.0 -6.0 outer membrane protein assembly factor BamB compare
PFLU_RS28725 -1.0 -6.1 DUF2059 domain-containing protein compare
PFLU_RS17005 -1.0 -3.2 tRNA hydroxylase compare
PFLU_RS07810 -1.0 -7.2 tRNA dihydrouridine(20/20a) synthase DusA compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in no stress control experiments

For no stress control D-Glucose across organisms