Experiment set3IT059 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05500 -10.0 -6.9 2-isopropylmalate synthase compare
MMP_RS07845 -10.0 -4.1 LL-diaminopimelate aminotransferase compare
MMP_RS01455 -9.8 -8.2 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS03450 -9.2 -3.8 glycine synthesis protein GlyXS (from data) compare
MMP_RS06375 -8.5 -7.2 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS04215 -8.1 -10.5 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS03390 -7.9 -7.7 malate dehydrogenase compare
MMP_RS06120 -7.4 -3.4 UPF0147 family protein compare
MMP_RS04615 -7.4 -4.5 PDGLE domain-containing protein compare
MMP_RS07345 -7.4 -5.1 glycine synthesis protein GlyXL (from data) compare
MMP_RS06270 -7.0 -8.3 TIGR00300 family protein compare
MMP_RS04710 -6.9 -2.8 hypothetical protein compare
MMP_RS03435 -6.7 -3.1 ketol-acid reductoisomerase compare
MMP_RS08715 -6.6 -3.1 formylmethanofuran dehydrogenase subunit B compare
MMP_RS04605 -6.6 -5.2 cobalt ECF transporter T component CbiQ compare
MMP_RS04620 -6.4 -13.5 cobalt transporter CbiM compare
MMP_RS01955 -6.4 -3.3 hypothetical protein compare
MMP_RS06625 -6.4 -3.7 DNA primase compare
MMP_RS02135 -6.3 -6.8 DUF5612 domain-containing protein compare
MMP_RS07185 -6.2 -16.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00750 -6.2 -4.0 fumarate hydratase compare
MMP_RS05930 -6.1 -4.1 3-isopropylmalate dehydratase large subunit compare
MMP_RS03035 -6.1 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08650 -5.8 -5.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05265 -5.7 -3.3 2-isopropylmalate synthase compare
MMP_RS03700 -5.7 -14.2 sodium:proton antiporter compare
MMP_RS07730 -5.5 -2.9 pyruvate synthase subunit beta compare
MMP_RS00300 -5.5 -1.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS04720 -5.5 -4.9 DedA family protein compare
MMP_RS01795 -5.4 -2.9 methanogenesis marker 6 protein compare
MMP_RS01915 -5.4 -16.7 DUF354 domain-containing protein compare
MMP_RS01910 -5.4 -12.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06730 -5.3 -3.4 phosphopantothenate/pantothenate synthetase compare
MMP_RS03600 -5.3 -3.7 triose-phosphate isomerase compare
MMP_RS08720 -5.3 -2.5 4Fe-4S binding protein compare
MMP_RS01175 -5.3 -5.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS00305 -5.2 -3.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS08635 -5.2 -3.0 UbiA family prenyltransferase compare
MMP_RS08300 -5.2 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS02240 -5.1 -5.5 methanogenesis marker 7 protein compare
MMP_RS06400 -5.1 -2.6 4Fe-4S binding protein compare
MMP_RS07005 -5.0 -1.2 4Fe-4S binding protein compare
MMP_RS03475 -4.9 -1.2 hypothetical protein compare
MMP_RS07390 -4.9 -4.6 cell division protein FtsZ compare
MMP_RS03960 -4.9 -1.6 hypothetical protein compare
MMP_RS06285 -4.9 -3.3 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03580 -4.8 -4.5 signal recognition particle-docking protein FtsY compare
MMP_RS08435 -4.7 -3.9 Era-like GTP-binding protein compare
MMP_RS04090 -4.7 -4.4 hypothetical protein compare
MMP_RS01920 -4.6 -12.9 glycosyltransferase family 2 protein compare
MMP_RS03400 -4.5 -4.6 archease compare
MMP_RS01905 -4.5 -15.0 glycosyltransferase compare
MMP_RS08820 -4.5 -7.1 hypothetical protein compare
MMP_RS03025 -4.5 -8.8 molybdenum cofactor guanylyltransferase compare
MMP_RS07630 -4.4 -2.5 ATP-binding cassette domain-containing protein compare
MMP_RS03315 -4.4 -2.3 ferrous iron transport protein A compare
MMP_RS02145 -4.4 -3.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS01700 -4.4 -1.5 dihydroxy-acid dehydratase compare
MMP_RS08745 -4.4 -10.1 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01925 -4.3 -10.3 DUF1616 domain-containing protein compare
MMP_RS07380 -4.3 -3.7 transcription elongation factor Spt5 compare
MMP_RS07955 -4.2 -6.3 FumA C-terminus/TtdB family hydratase beta subunit compare
MMP_RS08440 -4.1 -5.3 cell division protein SepF compare
MMP_RS06670 -4.1 -6.4 glucose-6-phosphate isomerase compare
MMP_RS01225 -4.1 -7.9 DUF5379 domain-containing protein compare
MMP_RS01830 -4.1 -2.7 tRNA-Val compare
MMP_RS05845 -4.1 -2.7 tRNA-intron lyase compare
MMP_RS01900 -4.1 -20.8 hypothetical protein compare
MMP_RS05640 -4.0 -8.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS07750 -4.0 -6.6 DUF357 domain-containing protein compare
MMP_RS06370 -3.9 -6.6 biotin synthase BioB compare
MMP_RS01890 -3.9 -6.1 nucleotide sugar dehydrogenase compare
MMP_RS04500 -3.9 -18.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS00110 -3.9 -5.5 hypothetical protein compare
MMP_RS08460 -3.9 -3.6 proteasome-activating nucleotidase compare
MMP_RS00515 -3.9 -1.8 DUF655 domain-containing protein compare
MMP_RS02345 -3.9 -4.8 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07600 -3.8 -4.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS04780 -3.8 -4.3 ribonuclease P compare
MMP_RS01875 -3.8 -11.1 N-acetyltransferase compare
MMP_RS05345 -3.8 -9.2 hypothetical protein compare
MMP_RS01800 -3.8 -6.4 TIGR00303 family protein compare
MMP_RS02875 -3.7 -13.8 chorismate pyruvate-lyase family protein compare
MMP_RS05815 -3.7 -3.0 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08790 -3.7 -4.0 translation initiation factor IF-2 subunit alpha compare
MMP_RS01880 -3.7 -7.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS00685 -3.7 -6.2 2-phospho-L-lactate guanylyltransferase compare
MMP_RS07555 -3.6 -1.2 monovalent cation/H+ antiporter subunit E compare
MMP_RS04685 -3.6 -4.5 DUF126 domain-containing protein compare
MMP_RS01385 -3.6 -1.2 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS01970 -3.6 -8.3 TIGR04279 domain-containing protein compare
MMP_RS05920 -3.6 -1.2 50S ribosomal protein L37e compare
MMP_RS05555 -3.6 -1.9 DUF4040 domain-containing protein compare
MMP_RS06230 -3.6 -4.6 helix-turn-helix domain-containing protein compare
MMP_RS08095 -3.5 -9.4 dethiobiotin synthase compare
MMP_RS06895 -3.5 -2.8 selenocysteine-specific translation elongation factor compare
MMP_RS01975 -3.5 -12.5 hypothetical protein compare
MMP_RS03445 -3.5 -1.8 methanogenesis marker 17 protein compare
MMP_RS08105 -3.5 -10.6 6-carboxyhexanoate--CoA ligase compare
MMP_RS01885 -3.5 -8.9 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS09020 -3.4 -2.5 hypothetical protein compare
MMP_RS01895 -3.4 -11.4 flippase compare
MMP_RS07735 -3.4 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS06020 -3.3 -6.6 archaeoflavoprotein AfpA compare
MMP_RS07200 -3.3 -10.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00695 -3.3 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07075 -3.3 -4.6 phosphomannomutase/phosphoglucomutase compare
MMP_RS08210 -3.3 -2.3 phosphatidylglycerophosphatase A compare
MMP_RS01325 -3.2 -3.6 dihydroneopterin aldolase family protein compare
MMP_RS04790 -3.2 -16.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS07635 -3.1 -9.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS05250 -3.1 -3.5 NFYB/HAP3 family transcription factor subunit compare
MMP_RS00040 -3.1 -6.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS06475 -3.1 -5.1 FAD-dependent oxidoreductase compare
MMP_RS01020 -3.1 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS04890 -3.0 -1.4 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05925 -3.0 -7.4 small nuclear ribonucleoprotein compare
MMP_RS06940 -3.0 -3.4 polyprenyl diphosphate synthase compare
MMP_RS01380 -3.0 -3.3 PHP domain-containing protein compare
MMP_RS08100 -2.9 -9.3 8-amino-7-oxononanoate synthase compare
MMP_RS06340 -2.9 -11.0 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01725 -2.9 -6.0 class I SAM-dependent methyltransferase family protein compare
MMP_RS02010 -2.9 -11.5 PHP domain-containing protein compare
MMP_RS08370 -2.9 -1.2 cation:proton antiporter subunit C compare
MMP_RS04775 -2.9 -4.6 adenosylhomocysteinase compare
MMP_RS02280 -2.8 -1.3 DUF211 domain-containing protein compare
MMP_RS01005 -2.8 -2.1 riboflavin synthase compare
MMP_RS01940 -2.8 -5.5 MoxR family ATPase compare
MMP_RS01610 -2.8 -5.0 hypothetical protein compare
MMP_RS06885 -2.8 -4.0 50S ribosome-binding GTPase compare
MMP_RS06900 -2.8 -3.4 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS05425 -2.8 -4.1 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07545 -2.7 -1.5 HTH domain-containing protein compare
MMP_RS01220 -2.7 -9.5 hypothetical protein compare
MMP_RS07755 -2.7 -2.3 DUF555 domain-containing protein compare
MMP_RS02900 -2.7 -1.1 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07645 -2.7 -8.5 aldehyde dehydrogenase family protein compare
MMP_RS01960 -2.6 -0.9 hypothetical protein compare
MMP_RS06310 -2.6 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS08165 -2.6 -3.6 phosphoglycerate dehydrogenase compare
MMP_RS06295 -2.6 -8.6 methanogenesis marker 14 protein compare
MMP_RS03140 -2.6 -16.2 hypothetical protein compare
MMP_RS06725 -2.6 -14.1 hypothetical protein compare
MMP_RS07605 -2.5 -5.1 diadenylate cyclase compare
MMP_RS01755 -2.5 -2.0 DUF2097 domain-containing protein compare
MMP_RS02195 -2.5 -3.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS00895 -2.5 -5.5 hypothetical protein compare
MMP_RS01545 -2.5 -1.9 CBS domain-containing protein compare
MMP_RS01985 -2.4 -8.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07420 -2.4 -5.2 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS08195 -2.4 -9.4 hypothetical protein compare
MMP_RS05550 -2.4 -1.1 cation:proton antiporter compare
MMP_RS07710 -2.4 -7.2 cell division protein FtsZ compare
MMP_RS06630 -2.3 -2.0 UPF0058 family protein compare
MMP_RS08330 -2.3 -4.9 NADH-quinone oxidoreductase subunit H compare
MMP_RS03145 -2.3 -9.0 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08760 -2.3 -1.6 hypothetical protein compare
MMP_RS07875 -2.2 -11.8 hypothetical protein compare
MMP_RS07580 -2.2 -2.6 DUF356 domain-containing protein compare
MMP_RS00720 -2.2 -8.7 metal-dependent hydrolase compare
MMP_RS00520 -2.2 -2.8 RNA polymerase Rpb4 family protein compare
MMP_RS06105 -2.2 -8.7 hydrogenase maturation peptidase HycI compare
MMP_RS07195 -2.1 -10.4 M20 family metallo-hydrolase compare
MMP_RS02245 -2.1 -5.2 hypothetical protein compare
MMP_RS03640 -2.1 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01935 -2.0 -9.3 DUF58 domain-containing protein compare
MMP_RS06350 -1.9 -9.0 HesA/MoeB/ThiF family protein compare
MMP_RS01945 -1.9 -7.2 DUF4350 domain-containing protein compare
MMP_RS01500 -1.9 -2.7 CBS domain-containing protein compare
MMP_RS07350 -1.9 -2.8 preprotein translocase subunit Sec61beta compare
MMP_RS00810 -1.9 -9.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS05460 -1.9 -12.2 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS04585 -1.9 -11.5 AIR synthase related protein compare
MMP_RS08840 -1.9 -8.6 class I SAM-dependent methyltransferase compare
MMP_RS07090 -1.8 -10.0 tRNA (adenine-N1)-methyltransferase compare
MMP_RS08605 -1.8 -7.4 flagellar protein E compare
MMP_RS08595 -1.8 -1.6 flagellar protein C compare
MMP_RS04955 -1.8 -5.5 DNA topoisomerase I compare
MMP_RS01950 -1.8 -8.5 hypothetical protein compare
MMP_RS01930 -1.8 -11.0 hypothetical protein compare
MMP_RS06315 -1.7 -1.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05430 -1.7 -2.1 TIGR00288 family NYN domain-containing protein compare
MMP_RS01665 -1.7 -2.9 DUF2111 domain-containing protein compare
MMP_RS06925 -1.6 -3.4 ribonuclease VapC4 compare
MMP_RS07575 -1.6 -2.9 RNA ligase partner protein compare
MMP_RS03095 -1.5 -7.4 diphthine synthase compare
MMP_RS06865 -1.5 -1.3 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06570 -1.5 -4.2 DUF190 domain-containing protein compare
MMP_RS06980 -1.5 -5.6 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS05295 -1.5 -10.0 minichromosome maintenance protein MCM compare
MMP_RS05440 -1.5 -9.4 winged helix-turn-helix transcriptional regulator compare
MMP_RS02800 -1.5 -4.6 nucleotidyltransferase domain-containing protein compare
MMP_RS06355 -1.5 -3.1 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07425 -1.4 -5.4 GTP-binding protein compare
MMP_RS00900 -1.4 -3.1 50S ribosomal protein L39e compare
MMP_RS02355 -1.4 -3.8 30S ribosomal protein S27ae compare
MMP_RS01265 -1.4 -1.6 hypothetical protein compare
MMP_RS07820 -1.4 -5.3 UPF0104 family protein compare
MMP_RS04785 -1.4 -7.3 hypothetical protein compare
MMP_RS06130 -1.3 -3.4 peptidylprolyl isomerase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms