Experiment set3IT059 for Methanococcus maripaludis JJ

Compare to:

formate McAA p-aminobenzoic acid dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.5 15.7 hypothetical protein compare
MMJJ_RS08130 +1.3 1.6 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS03725 +1.1 2.0 sulfurtransferase TusA family protein compare
MMJJ_RS04005 +1.0 7.4 acetate--CoA ligase family protein compare
MMJJ_RS09120 +0.8 2.2 aspartate kinase compare
MMJJ_RS04965 +0.7 2.1 RNA polymerase Rpb4 family protein compare
MMJJ_RS05280 +0.7 0.8 hypothetical protein compare
MMJJ_RS04545 +0.7 2.2 PadR family transcriptional regulator compare
MMJJ_RS06680 +0.7 3.9 DUF366 family protein compare
MMJJ_RS03250 +0.7 1.5 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS06505 +0.7 2.6 prephenate dehydratase compare
MMJJ_RS05685 +0.6 4.3 class III signal peptide-containing protein compare
MMJJ_RS03835 +0.6 3.6 DUF504 domain-containing protein compare
MMJJ_RS03375 +0.6 3.7 hypothetical protein compare
MMJJ_RS07185 +0.6 3.0 DUF371 domain-containing protein compare
MMJJ_RS07240 +0.6 5.1 MBL fold metallo-hydrolase compare
MMJJ_RS07025 +0.6 2.7 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS06500 +0.6 4.2 class I SAM-dependent methyltransferase compare
MMJJ_RS07220 +0.6 4.4 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS01530 +0.5 1.0 YwbE family protein compare
MMJJ_RS07225 +0.5 3.7 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08830 +0.5 2.7 hypothetical protein compare
MMJJ_RS06540 +0.5 1.5 DUF2120 domain-containing protein compare
MMJJ_RS06090 +0.5 3.1 hypothetical protein compare
MMJJ_RS06460 +0.5 3.4 cytochrome c compare
MMJJ_RS04610 +0.5 2.2 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS07235 +0.5 4.1 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS06950 +0.5 3.2 4-demethylwyosine synthase TYW1 compare
MMJJ_RS06190 +0.5 3.8 7-cyano-7-deazaguanine synthase compare
MMJJ_RS03775 +0.5 1.9 50S ribosomal protein L15e compare
MMJJ_RS01855 +0.5 3.5 MBL fold metallo-hydrolase compare
MMJJ_RS04955 +0.5 3.1 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS06385 +0.5 1.9 hypothetical protein compare
MMJJ_RS07280 +0.5 2.4 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS07920 +0.5 3.1 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS07230 +0.5 2.7 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06515 +0.4 3.6 ribonuclease III compare
MMJJ_RS08485 +0.4 1.7 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS06440 +0.4 2.9 DUF4870 domain-containing protein compare
MMJJ_RS07210 +0.4 3.4 AmmeMemoRadiSam system protein B compare
MMJJ_RS06275 +0.4 1.7 hypothetical protein compare
MMJJ_RS06810 +0.4 3.3 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06685 +0.4 3.6 S-layer protein compare
MMJJ_RS06470 +0.4 3.3 tripartite tricarboxylate transporter permease compare
MMJJ_RS06675 +0.4 2.9 TIGR01212 family radical SAM protein compare
MMJJ_RS06210 +0.4 2.1 hypothetical protein compare
MMJJ_RS05975 +0.4 2.6 sulfurtransferase TusA family protein compare
MMJJ_RS05040 +0.4 2.7 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS06770 +0.4 3.2 hypothetical protein compare
MMJJ_RS05530 +0.4 1.7 roadblock/LC7 domain-containing protein compare
MMJJ_RS06535 +0.4 3.1 UPF0104 family protein compare
MMJJ_RS05915 +0.4 1.7 multiprotein bridging factor aMBF1 compare
MMJJ_RS06735 +0.4 2.3 cobalt ECF transporter T component CbiQ compare
MMJJ_RS04105 +0.4 2.9 prepilin peptidase compare
MMJJ_RS06800 +0.4 1.7 prefoldin subunit alpha compare
MMJJ_RS01970 +0.4 1.7 hypothetical protein compare
MMJJ_RS06790 +0.4 2.9 nucleotidyltransferase family protein compare
MMJJ_RS06445 +0.3 2.9 hypothetical protein compare
MMJJ_RS03515 +0.3 2.1 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS06710 +0.3 2.6 TldD/PmbA family protein compare
MMJJ_RS06960 +0.3 2.9 CAP domain-containing protein compare
MMJJ_RS04375 +0.3 0.8 hypothetical protein compare
MMJJ_RS06205 +0.3 2.4 EamA family transporter compare
MMJJ_RS06280 +0.3 2.4 hypothetical protein compare
MMJJ_RS08100 +0.3 1.7 hypothetical protein compare
MMJJ_RS07915 +0.3 1.6 CBS domain-containing protein compare
MMJJ_RS06640 +0.3 2.0 YfcE family phosphodiesterase compare
MMJJ_RS03805 +0.3 1.1 hypothetical protein compare
MMJJ_RS06520 +0.3 2.2 TldD/PmbA family protein compare
MMJJ_RS07270 +0.3 2.1 ribonuclease HII compare
MMJJ_RS02180 +0.3 1.6 DHH family phosphoesterase compare
MMJJ_RS07890 +0.3 2.1 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS04815 +0.3 1.7 TIM barrel protein compare
MMJJ_RS06430 +0.3 1.8 haloacid dehalogenase compare
MMJJ_RS06745 +0.3 1.7 energy-coupling factor ABC transporter permease compare
MMJJ_RS07450 +0.3 1.5 hypothetical protein compare
MMJJ_RS05390 +0.3 2.3 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS05520 +0.3 2.0 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS04345 +0.3 1.3 DUF2080 family transposase-associated protein compare
MMJJ_RS08455 +0.3 1.4 tetratricopeptide repeat protein compare
MMJJ_RS07010 +0.3 1.6 preprotein translocase subunit Sec61beta compare
MMJJ_RS07795 +0.3 1.6 cupin domain-containing protein compare
MMJJ_RS08165 +0.3 1.7 thermonuclease family protein compare
MMJJ_RS07985 +0.3 1.4 hypothetical protein compare
MMJJ_RS06580 +0.3 2.1 alanine dehydrogenase compare
MMJJ_RS05815 +0.3 1.2 hypothetical protein compare
MMJJ_RS09380 +0.3 1.1 hypothetical protein compare
MMJJ_RS03350 +0.3 0.7 hypothetical protein compare
MMJJ_RS06045 +0.3 1.6 hypothetical protein compare
MMJJ_RS07800 +0.3 2.1 AMP-binding protein compare
MMJJ_RS07215 +0.3 2.2 TIGR00341 family protein compare
MMJJ_RS07815 +0.3 1.8 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS05990 +0.3 1.7 phosphatase PAP2 family protein compare
MMJJ_RS05895 +0.3 2.2 ABC transporter permease compare
MMJJ_RS07260 +0.3 1.9 PspC domain-containing protein compare
MMJJ_RS07445 +0.3 1.8 RlmF-related methyltransferase compare
MMJJ_RS03360 +0.3 0.4 hypothetical protein compare
MMJJ_RS07765 +0.3 0.9 DMT family protein compare
MMJJ_RS06120 +0.3 1.9 DUF4013 domain-containing protein compare
MMJJ_RS09300 +0.3 0.8 hypothetical protein compare
MMJJ_RS07365 +0.3 1.9 CatB-related O-acetyltransferase compare
MMJJ_RS03450 +0.3 1.5 hypothetical protein compare
MMJJ_RS05500 +0.2 2.2 hypothetical protein compare
MMJJ_RS00145 +0.2 2.0 aquaporin family protein compare
MMJJ_RS07015 +0.2 0.4 PFL family protein compare
MMJJ_RS03575 +0.2 1.1 NUDIX hydrolase compare
MMJJ_RS05580 +0.2 1.5 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS04500 +0.2 1.5 hypothetical protein compare
MMJJ_RS02270 +0.2 1.2 HEPN domain-containing protein compare
MMJJ_RS06115 +0.2 1.7 pyruvate kinase compare
MMJJ_RS05605 +0.2 1.0 hypothetical protein compare
MMJJ_RS05970 +0.2 0.9 MJ0307 family thioredoxin compare
MMJJ_RS01955 +0.2 2.0 hypothetical protein compare
MMJJ_RS05200 +0.2 1.8 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS00745 +0.2 1.0 hypothetical protein compare
MMJJ_RS06235 +0.2 1.9 IGHMBP2 family helicase compare
MMJJ_RS04365 +0.2 1.4 helix-turn-helix transcriptional regulator compare
MMJJ_RS03290 +0.2 1.9 amidohydrolase compare
MMJJ_RS04215 +0.2 1.9 DMT family transporter compare
MMJJ_RS02665 +0.2 0.7 methyl-accepting chemotaxis protein compare
MMJJ_RS08160 +0.2 1.4 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMJJ_RS01300 +0.2 1.5 MarR family transcriptional regulator compare
MMJJ_RS07255 +0.2 1.9 hypothetical protein compare
MMJJ_RS06765 +0.2 1.9 hypothetical protein compare
MMJJ_RS06455 +0.2 1.7 YeeE/YedE family protein compare
MMJJ_RS02285 +0.2 0.6 class III signal peptide-containing protein compare
MMJJ_RS01745 +0.2 1.0 metal-dependent transcriptional regulator compare
MMJJ_RS06130 +0.2 1.2 hypothetical protein compare
MMJJ_RS03510 +0.2 1.3 acyl-CoA dehydratase activase compare
MMJJ_RS06590 +0.2 1.7 sodium:alanine symporter family protein compare
MMJJ_RS05660 +0.2 1.5 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS08525 +0.2 1.3 peptidylprolyl isomerase compare
MMJJ_RS05665 +0.2 1.5 hypothetical protein compare
MMJJ_RS09325 +0.2 1.2 hypothetical protein compare
MMJJ_RS07200 +0.2 1.6 MFS transporter compare
MMJJ_RS06585 +0.2 1.5 alanine racemase compare
MMJJ_RS05690 +0.2 1.9 hypothetical protein compare
MMJJ_RS07835 +0.2 1.3 UPF0489 family protein compare
MMJJ_RS00150 +0.2 1.0 DUF2180 family protein compare
MMJJ_RS05410 +0.2 1.3 RecB-family nuclease compare
MMJJ_RS07905 +0.2 1.3 DUF89 domain-containing protein compare
MMJJ_RS06055 +0.2 1.3 S-methyl-5-thioribose-1-phosphate isomerase compare
MMJJ_RS08515 +0.2 1.0 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS06550 +0.2 1.4 ABC transporter permease compare
MMJJ_RS02170 +0.2 1.5 2-thiouracil desulfurase family protein compare
MMJJ_RS08305 +0.2 0.9 peroxiredoxin compare
MMJJ_RS07005 +0.2 1.1 transcription factor S compare
MMJJ_RS08310 +0.2 1.2 ZIP family metal transporter compare
MMJJ_RS03220 +0.2 1.6 inosine/xanthosine triphosphatase compare
MMJJ_RS04340 +0.2 0.5 hypothetical protein compare
MMJJ_RS07740 +0.2 1.3 DUF2334 domain-containing protein compare
MMJJ_RS07175 +0.2 1.5 DEAD/DEAH box helicase compare
MMJJ_RS02160 +0.2 1.3 amino acid ABC transporter permease compare
MMJJ_RS05355 +0.2 1.4 DUF2121 domain-containing protein compare
MMJJ_RS05695 +0.2 0.6 class III signal peptide-containing protein compare
MMJJ_RS08195 +0.2 1.4 DUF4186 domain-containing protein compare
MMJJ_RS05700 +0.2 1.2 metallophosphoesterase compare
MMJJ_RS06555 +0.2 1.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS02330 +0.2 1.5 ABC transporter ATP-binding protein compare
MMJJ_RS01010 +0.2 1.7 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS02860 +0.2 0.6 site-specific integrase compare
MMJJ_RS05235 +0.2 1.6 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS06560 +0.2 1.4 site-2 protease family protein compare
MMJJ_RS01035 +0.2 0.8 hypothetical protein compare
MMJJ_RS04625 +0.2 1.3 SLC13 family permease compare
MMJJ_RS00400 +0.2 0.6 tautomerase family protein compare
MMJJ_RS07810 +0.2 1.2 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS05715 +0.2 1.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS01395 +0.2 0.8 DUF1894 domain-containing protein compare
MMJJ_RS04390 +0.2 1.5 rhomboid family intramembrane serine protease compare
MMJJ_RS05405 +0.2 1.4 DNA cytosine methyltransferase compare
MMJJ_RS08520 +0.2 0.6 peptidylprolyl isomerase compare
MMJJ_RS07480 +0.2 1.3 FAD-dependent oxidoreductase compare
MMJJ_RS07385 +0.2 1.2 ribosomal protein S18-alanine N-acetyltransferase compare
MMJJ_RS07860 +0.2 1.0 hypothetical protein compare
MMJJ_RS06100 +0.2 1.2 rubrerythrin compare
MMJJ_RS02125 +0.2 0.8 hypothetical protein compare
MMJJ_RS01790 +0.2 1.1 pyridoxamine 5'-phosphate oxidase family protein compare
MMJJ_RS08285 +0.2 1.2 class I SAM-dependent methyltransferase compare
MMJJ_RS02905 +0.2 0.6 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMJJ_RS07495 +0.2 1.0 4Fe-4S binding protein compare
MMJJ_RS04420 +0.2 1.3 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS05980 +0.2 0.9 DUF5400 domain-containing protein compare
MMJJ_RS06450 +0.2 1.2 DUF3343 domain-containing protein compare
MMJJ_RS09255 +0.2 0.7 hypothetical protein compare
MMJJ_RS06080 +0.2 1.1 serine/threonine protein kinase compare
MMJJ_RS03285 +0.2 0.8 gamma-glutamylcyclotransferase compare
MMJJ_RS07685 +0.2 1.3 glycogen/starch synthase compare
MMJJ_RS03025 +0.2 1.3 Ig-like domain-containing protein compare
MMJJ_RS08210 +0.2 1.5 hypothetical protein compare
MMJJ_RS06465 +0.2 1.0 hypothetical protein compare
MMJJ_RS00555 +0.1 1.0 hypothetical protein compare
MMJJ_RS01510 +0.1 0.9 ATP-binding protein compare
MMJJ_RS08370 +0.1 0.6 hypothetical protein compare
MMJJ_RS04510 +0.1 1.2 hypothetical protein compare
MMJJ_RS07695 +0.1 1.2 glycoside hydrolase family 15 protein compare
MMJJ_RS00890 +0.1 1.1 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS08255 +0.1 1.0 GNAT family N-acetyltransferase compare
MMJJ_RS08670 +0.1 1.0 phosphate signaling complex protein PhoU compare
MMJJ_RS01835 +0.1 1.2 tRNA pseudouridine(13) synthase TruD compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments