Experiment set3IT059 for Caulobacter crescentus NA1000

Compare to:

PYE with Vancomycin Hydrochloride Hydrate 0.007 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03108 +7.4 37.7 TonB-dependent outer membrane receptor compare
CCNA_03281 +7.3 56.7 AsnC-family transcriptional regulator compare
CCNA_01751 +6.0 17.4 aminodeoxychorismate lyase compare
CCNA_00043 +5.9 15.0 N utilization substance protein A NusA compare
CCNA_02243 +5.8 31.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_00324 +5.6 7.8 ExbD-family protein compare
CCNA_02419 +5.5 12.5 TonB1 protein compare
CCNA_00224 +5.4 35.6 TonB-dependent receptor protein compare
CCNA_03256 +4.8 8.2 chorismate synthase compare
CCNA_03052 +4.5 12.7 acyltransferase compare
CCNA_02242 +4.4 10.8 PHB granule-associated protein, phasin2 compare
CCNA_02842 +4.4 18.8 two-component sensor histidine kinase compare
CCNA_02957 +4.1 8.9 ArsR-family transcriptional regulator compare
CCNA_02287 +3.9 16.6 TetR-family transcriptional regulator compare
CCNA_01248 +3.9 12.9 TetR-family transcriptional regulator compare
CCNA_01324 +3.9 18.6 LSU ribosomal protein L30P compare
CCNA_02845 +3.8 13.7 two-component response regulator compare
CCNA_03824 +3.7 25.0 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01534 +3.6 12.8 hypothetical protein compare
CCNA_01361 +3.5 9.1 PepSY superfamily protein compare
CCNA_02030 +3.4 7.7 hypothetical protein compare
CCNA_00398 +3.4 20.2 hypothetical protein compare
CCNA_02028 +3.4 5.5 NTF2 superfamily protein compare
CCNA_03557 +3.4 10.6 hypothetical protein compare
CCNA_01954 +3.2 5.6 ribonuclease E compare
CCNA_03030 +3.1 15.3 cytochrome c2 compare
CCNA_02328 +3.1 2.7 cell cycle regulatory protein GcrA compare
CCNA_02026 +3.0 12.1 hypothetical protein compare
CCNA_R0048 +2.9 4.7 tRNA-Leu compare
CCNA_00044 +2.9 9.3 ribosome maturation protein RimP compare
CCNA_02103 +2.9 7.5 hypothetical protein compare
CCNA_01199 +2.9 16.1 glucose-1-phosphate thymidylyltransferase compare
CCNA_03072 +2.7 11.3 TetR-family transcriptional regulator compare
CCNA_03401 +2.7 9.8 conserved hypothetical cytosolic protein compare
CCNA_01193 +2.7 19.3 amylosucrase compare
CCNA_00846 +2.6 22.6 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00497 +2.6 15.1 putative rhamnosyl transferase compare
CCNA_02646 +2.6 3.1 cell division protein MraZ compare
CCNA_01712 +2.5 21.1 CopY/TcrY family transcriptional repressor compare
CCNA_01739 +2.5 13.0 LSU ribosomal protein L9P compare
CCNA_02021 +2.5 7.5 hypothetical protein compare
CCNA_00684 +2.5 17.1 anti-sigma factor, ChrR-family compare
CCNA_02732 +2.5 4.0 hypothetical protein compare
CCNA_02133 +2.5 9.5 glucokinase compare
CCNA_01433 +2.4 5.6 integration host factor alpha-subunit compare
CCNA_03064 +2.4 14.4 PadR-family transcriptional regulator compare
CCNA_03612 +2.4 10.3 HTH XRE-family transcriptional regulator compare
CCNA_00389 +2.3 2.4 aminomethyltransferase family protein compare
CCNA_00699 +2.3 14.1 LSU ribosomal protein L28P compare
CCNA_01959 +2.3 6.4 3-dehydroquinate dehydratase compare
CCNA_03287 +2.3 8.7 PadR-family transcriptional regulator compare
CCNA_01553 +2.3 12.3 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_01086 +2.3 15.5 GTP-binding protein lepA compare
CCNA_03453 +2.3 12.5 AcrR-family transcriptional regulator compare
CCNA_02151 +2.3 5.2 exodeoxyribonuclease VII small subunit compare
CCNA_02575 +2.3 6.3 hypothetical protein compare
CCNA_01295 +2.2 10.7 integral membrane protein compare
CCNA_02066 +2.2 9.9 phytoene/squalene synthase family protein compare
CCNA_03043 +2.2 12.6 type IV pilin protein pilA compare
CCNA_00493 +2.2 12.1 putative polyketide cyclase-dehydrase/lipid transport protein compare
CCNA_00322 +2.2 15.1 hypothetical protein compare
CCNA_02077 +2.2 3.6 5'(3')-nucleotidase/polyphosphatase SurE compare
CCNA_01443 +2.1 7.9 hypothetical protein compare
CCNA_03352 +2.1 11.0 YebC/PmpR transcriptional regulator compare
CCNA_02980 +2.1 15.0 tryptophan 2,3-dioxygenase compare
CCNA_03643 +2.1 3.8 succinate dehydrogenase membrane anchor subunit compare
CCNA_03961 +2.1 8.3 hypothetical protein compare
CCNA_01252 +2.1 15.4 soluble lytic murein transglycosylase compare
CCNA_00027 +2.1 4.4 2OG-Fe(II) oxygenase compare
CCNA_02135 +2.1 10.2 6-phosphogluconolactonase compare
CCNA_R0037 +2.1 5.8 tRNA-Glu compare
CCNA_03012 +2.1 12.1 peroxiredoxin compare
CCNA_02546 +2.1 14.8 GGDEF/response regulator protein PleD compare
CCNA_02448 +2.1 12.0 hypothetical protein compare
CCNA_02225 +2.0 10.1 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02339 +2.0 14.0 methyltransferase compare
CCNA_03252 +2.0 15.7 CopY/TcrY-family transcriptional regulator compare
CCNA_02025 +2.0 7.7 hypothetical protein compare
CCNA_00742 +2.0 11.4 HAD superfamily sugar phosphatase compare
CCNA_00543 +2.0 7.6 methyl-accepting chemotaxis protein compare
CCNA_03129 +2.0 13.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02180 +2.0 4.0 iron-sulfur cluster assembly/repair protein ApbC compare
CCNA_03325 +2.0 6.8 hypothetical protein compare
CCNA_01801 +2.0 6.4 hypothetical protein compare
CCNA_02134 +2.0 13.8 phosphogluconate dehydratase compare
CCNA_03289 +2.0 14.6 HicB-family RNA-binding protein compare
CCNA_01573 +2.0 9.2 ArsR-family transcriptional regulator compare
CCNA_02447 +1.9 11.4 PspA/IM30 family regulatory protein compare
CCNA_03479 +1.9 11.6 MarR-family transcriptional regulator compare
CCNA_00521 +1.9 3.8 antitoxin protein compare
CCNA_00939 +1.9 9.5 MarR-family transcriptional regulator compare
CCNA_01775 +1.9 8.7 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_03811 +1.9 11.4 LysR-family transcriptional regulator compare
CCNA_03271 +1.9 15.1 methionine gamma-lyase compare
CCNA_00447 +1.9 7.4 chemotaxis protein cheD compare
CCNA_03514 +1.9 10.6 cytochrome c oxidase assembly protein ctaG compare
CCNA_01684 +1.9 12.1 phenylalanine-4-hydroxylase compare
CCNA_01851 +1.9 13.2 quinol cytochrome oxidase polypeptide II compare
CCNA_01931 +1.9 10.1 TetR-family transcriptional regulator compare
CCNA_01526 +1.9 9.5 flagellar biosynthesis regulatory protein flaF compare
CCNA_01011 +1.9 9.2 imidazolonepropionase compare
CCNA_03689 +1.9 14.4 alanine dehydrogenase compare
CCNA_00505 +1.9 9.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03104 +1.9 9.9 3-dehydroquinate synthase compare
CCNA_03105 +1.9 7.8 DnaJ domain protein compare
CCNA_01923 +1.8 11.2 ATP-dependent RNA helicase compare
CCNA_00392 +1.8 12.2 dihydroorotase compare
CCNA_01453 +1.8 7.5 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00756 +1.8 5.3 hypothetical protein compare
CCNA_00920 +1.8 8.2 hypothetical protein compare
CCNA_03989 +1.8 13.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01942 +1.8 9.9 Rrf2 family protein compare
CCNA_01008 +1.8 13.5 urocanate hydratase compare
CCNA_01094 +1.8 5.5 hypothetical protein compare
CCNA_01059 +1.8 13.3 S-layer protein rsaA compare
CCNA_01393 +1.8 12.8 soluble lytic murein transglycosylase compare
CCNA_03964 +1.8 4.5 hypothetical protein compare
CCNA_03132 +1.8 7.2 transcriptional regulator, antitoxin protein higA compare
CCNA_01840 +1.8 11.3 MerR-family transcriptional regulator compare
CCNA_03513 +1.8 10.3 cytochrome c oxidase subunit III coxC compare
CCNA_00518 +1.8 8.4 LSU ribosomal protein L25P compare
CCNA_02379 +1.7 11.1 hypothetical protein compare
CCNA_02073 +1.7 6.5 cupin domain transcriptional regulator compare
CCNA_01848 +1.7 10.4 quinol cytochrome oxidase polypeptide IV compare
CCNA_00028 +1.7 8.4 TonB-dependent receptor compare
CCNA_02663 +1.7 3.9 DnaK suppressor protein DksA compare
CCNA_02617 +1.7 13.5 histidinol-phosphate aminotransferase compare
CCNA_00527 +1.7 9.1 hypothetical protein compare
CCNA_03316 +1.7 11.9 UDP-N-acetylglucosamine 4,6-dehydratase/UDP-D-quinovosamine 4-dehydrogenase compare
CCNA_01690 +1.7 5.6 MAPEG family membrane protein compare
CCNA_00299 +1.7 10.1 phosphoribosylamine--glycine ligase compare
CCNA_00255 +1.7 4.3 esterase compare
CCNA_03123 +1.7 9.4 ArsR-family transcriptional regulator compare
CCNA_02125 +1.7 11.8 polar development protein podJ compare
CCNA_02324 +1.7 9.9 heat shock protein 33 hsp33 compare
CCNA_03805 +1.7 11.9 PadR-family transcriptional regulator compare
CCNA_02591 +1.7 7.7 glutaredoxin compare
CCNA_02760 +1.7 4.4 hypothetical protein compare
CCNA_02616 +1.6 12.0 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02941 +1.6 3.9 transcription elongation factor greA compare
CCNA_02586 +1.6 9.5 phosphoribosylformylglycinamidine synthase II compare
CCNA_01525 +1.6 9.5 flagellar biosynthesis repressor flbT compare
CCNA_00031 +1.6 7.1 toxin protein VapC compare
CCNA_01580 +1.6 5.5 M15 superfamily membrane peptidase compare
CCNA_02000 +1.6 3.2 SSU ribosomal protein S2P compare
CCNA_00675 +1.6 7.5 VapC-like PIN domain ribonuclease compare
CCNA_01730 +1.6 10.0 amidophosphoribosyltransferase compare
CCNA_02199 +1.6 12.8 methyltransferase compare
CCNA_02132 +1.6 4.5 LacI-family transcriptional regulator compare
CCNA_00872 +1.6 3.3 glutaredoxin compare
CCNA_02387 +1.6 12.0 glutathione reductase compare
CCNA_00945 +1.6 8.6 chemotaxis protein MotD compare
CCNA_00264 +1.6 10.3 C4-dicarboxylate transport protein compare
CCNA_01186 +1.6 9.5 hypothetical protein compare
CCNA_03464 +1.6 9.3 glycine cleavage system H protein compare
CCNA_00011 +1.6 12.9 chaperone protein DnaJ compare
CCNA_03688 +1.6 8.1 AsnC-family transcriptional regulator compare
CCNA_01405 +1.6 3.2 GIY-YIG domain protein compare
CCNA_01721 +1.6 5.2 RNA polymerase ECF sigma factor compare
CCNA_01913 +1.6 9.1 MarR-family transcriptional regulator compare
CCNA_00852 +1.6 8.3 TetR family transcriptional regulator compare
CCNA_01406 +1.6 6.7 metal-dependent hydrolase compare
CCNA_03807 +1.5 7.7 organic solvent resistance transport system Ttg2D protein compare
CCNA_03041 +1.5 9.6 pilus assembly protein CpaB compare
CCNA_02414 +1.5 8.4 DadA-related amino acid oxidase compare
CCNA_00562 +1.5 10.5 dihydroorotate dehydrogenase compare
CCNA_00354 +1.5 9.8 NlpC/P60 CHAP domain amidase protein compare
CCNA_03062 +1.5 8.4 cell wall hydrolase family protein compare
CCNA_03808 +1.5 11.1 organic solvent resistance transport system Ttg2C protein compare
CCNA_03949 +1.5 7.2 hypothetical protein compare
CCNA_01009 +1.5 9.5 N-formylglutamate deformylase compare
CCNA_00032 +1.5 4.7 antitoxin protein VapB compare
CCNA_03951 +1.5 5.0 hypothetical protein compare
CCNA_01742 +1.5 8.7 hypothetical protein compare
CCNA_02576 +1.5 11.1 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_02341 +1.5 5.2 small heat shock protein compare
CCNA_01444 +1.5 7.7 poly(3-hydroxyalkanoate) polymerase compare
CCNA_03215 +1.5 9.1 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02426 +1.5 7.6 ribonuclease, CafA family compare
CCNA_03806 +1.5 9.9 outer membrane lipoprotein compare
CCNA_01624 +1.5 4.9 orotate phosphoribosyltransferase compare
CCNA_01629 +1.5 8.8 signal peptidase I compare
CCNA_03040 +1.5 9.9 outer membrane pilus secretion channel CpaC compare
CCNA_R0054 +1.5 3.1 tRNA-Gly compare
CCNA_01528 +1.5 7.9 flagellin fljK compare
CCNA_00442 +1.5 11.8 chemotaxis histidine kinase protein cheAI compare
CCNA_01679 +1.5 8.2 succinylglutamic semialdehyde dehydrogenase compare
CCNA_03089 +1.4 8.0 hypothetical protein compare
CCNA_03858 +1.4 8.4 protein translocase subunit secB compare
CCNA_02619 +1.4 10.5 stomatin/prohibitin-related protein compare
CCNA_00803 +1.4 5.3 chemotaxis protein cheW compare
CCNA_02330 +1.4 6.6 hypothetical protein compare
CCNA_00362 +1.4 5.7 zinc uptake regulation protein compare
CCNA_01678 +1.4 8.0 arginine N-succinyltransferase, beta chain compare
CCNA_03038 +1.4 10.2 pilus assembly ATPase CpaE compare
CCNA_01020 +1.4 8.9 LacI-family transcriptional regulator compare
CCNA_00947 +1.4 10.3 flagellar hook protein FlgE compare
CCNA_00446 +1.4 6.9 chemotaxis receiver domain protein cheYII compare
CCNA_00400 +1.4 7.6 MarR/EmrR-family transcriptional regulator compare
CCNA_03744 +1.4 9.2 dTDP-glucose 4,6-dehydratase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Caulobacter crescentus NA1000

For stress Vancomycin Hydrochloride Hydrate across organisms