Experiment set3IT059 for Burkholderia phytofirmans PsJN

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS13705 -7.4 -4.2 chorismate synthase compare
BPHYT_RS09500 -7.3 -4.7 glucose-6-phosphate isomerase compare
BPHYT_RS17675 -6.9 -1.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16735 -6.7 -4.6 phosphogluconate dehydratase compare
BPHYT_RS17670 -6.7 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33915 -6.6 -7.5 isopropylmalate isomerase compare
BPHYT_RS14895 -6.6 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06555 -6.4 -8.4 ketol-acid reductoisomerase compare
BPHYT_RS05225 -6.2 -10.4 phosphoenolpyruvate carboxylase compare
BPHYT_RS05960 -5.9 -6.9 endoribonuclease L-PSP compare
BPHYT_RS06545 -5.8 -10.5 acetolactate synthase compare
BPHYT_RS12985 -5.8 -2.9 amino acid acetyltransferase compare
BPHYT_RS08955 -5.8 -4.0 homoserine dehydrogenase compare
BPHYT_RS17855 -5.7 -16.5 glutamate synthase compare
BPHYT_RS14190 -5.7 -7.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12935 -5.6 -6.1 chemotaxis protein CheY compare
BPHYT_RS17885 -5.6 -8.3 3-dehydroquinate synthase compare
BPHYT_RS33865 -5.5 -8.3 tryptophan synthase alpha chain compare
BPHYT_RS08960 -5.5 -2.4 threonine synthase compare
BPHYT_RS17715 -5.5 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17690 -5.5 -11.6 imidazole glycerol phosphate synthase compare
BPHYT_RS17680 -5.4 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS12530 -5.4 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33900 -5.3 -10.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS15915 -5.3 -12.8 ornithine carbamoyltransferase compare
BPHYT_RS09515 -5.3 -5.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17685 -5.3 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS02610 -5.3 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS03640 -5.2 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06610 -5.2 -1.9 triosephosphate isomerase compare
BPHYT_RS08850 -5.1 -2.6 transcriptional regulator compare
BPHYT_RS33840 -5.1 -7.4 amidophosphoribosyltransferase compare
BPHYT_RS17405 -5.0 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS33645 -4.9 -4.3 homoserine kinase compare
BPHYT_RS16835 -4.9 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16675 -4.9 -2.8 dihydroorotase compare
BPHYT_RS16840 -4.8 -3.3 transketolase compare
BPHYT_RS02590 -4.8 -8.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33880 -4.8 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS18320 -4.7 -12.2 orotate phosphoribosyltransferase compare
BPHYT_RS16245 -4.7 -4.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06405 -4.6 -7.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS29015 -4.6 -1.7 RND transporter compare
BPHYT_RS33835 -4.5 -5.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15920 -4.5 -9.9 argininosuccinate synthase compare
BPHYT_RS14910 -4.5 -7.5 chorismate mutase compare
BPHYT_RS33920 -4.4 -8.5 type II citrate synthase compare
BPHYT_RS16255 -4.4 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS13470 -4.3 -1.1 arylsulfate sulfotransferase compare
BPHYT_RS04955 -4.3 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS12840 -4.2 -5.7 pyruvate dehydrogenase compare
BPHYT_RS06900 -4.2 -7.2 aspartate aminotransferase compare
BPHYT_RS02905 -4.2 -15.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS16250 -4.1 -1.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS03725 -4.1 -1.8 serine hydroxymethyltransferase compare
BPHYT_RS19340 -4.1 -9.6 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS06045 -3.9 -6.1 transaldolase compare
BPHYT_RS01455 -3.9 -1.0 peptide deformylase compare
BPHYT_RS04720 -3.9 -8.9 transcriptional regulator compare
BPHYT_RS06685 -3.9 -3.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS18705 -3.7 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16905 -3.5 -3.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS18340 -3.5 -2.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS22940 -3.4 -2.0 pilus assembly protein TadE compare
BPHYT_RS17700 -3.4 -4.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17890 -3.4 -2.0 shikimate kinase compare
BPHYT_RS12150 -3.4 -11.7 PII uridylyl-transferase compare
BPHYT_RS23230 -3.3 -1.5 histidine kinase compare
BPHYT_RS01595 -3.2 -6.9 homoserine O-acetyltransferase compare
BPHYT_RS06975 -3.2 -2.9 glutamate racemase compare
BPHYT_RS33875 -3.1 -3.5 tryptophan synthase subunit alpha compare
BPHYT_RS17400 -3.1 -3.7 anthranilate phosphoribosyltransferase compare
BPHYT_RS33805 -3.1 -1.1 hypothetical protein compare
BPHYT_RS12940 -3.0 -5.1 signal transduction histidine kinase compare
BPHYT_RS17390 -3.0 -11.4 anthranilate synthase subunit I compare
BPHYT_RS05905 -2.9 -1.5 hypothetical protein compare
BPHYT_RS08565 -2.9 -1.0 dihydroorotate dehydrogenase compare
BPHYT_RS04730 -2.8 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03535 -2.8 -4.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS04740 -2.8 -4.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14195 -2.6 -3.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS35310 -2.6 -2.0 GCN5 family N-acetyltransferase compare
BPHYT_RS16270 -2.6 -4.8 phosphoglycerate kinase compare
BPHYT_RS05620 -2.5 -1.4 CsbD family protein compare
BPHYT_RS05320 -2.4 -1.2 beta-lactamase compare
BPHYT_RS22860 -2.4 -1.0 chemotaxis protein CheY compare
BPHYT_RS17920 -2.4 -1.3 protein CyaY compare
BPHYT_RS13645 -2.4 -12.1 threonine--tRNA ligase compare
BPHYT_RS12845 -2.4 -10.6 ATPase compare
BPHYT_RS20505 -2.4 -1.3 carboxymethylenebutenolidase compare
BPHYT_RS10100 -2.4 -2.6 dihydroxy-acid dehydratase compare
BPHYT_RS07540 -2.3 -1.4 hypothetical protein compare
BPHYT_RS04725 -2.3 -4.8 sulfite reductase compare
BPHYT_RS16880 -2.3 -1.9 malic enzyme compare
BPHYT_RS34295 -2.3 -1.0 fimbrial protein compare
BPHYT_RS34100 -2.3 -1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS05650 -2.2 -1.4 hypothetical protein compare
BPHYT_RS04745 -2.2 -4.1 sulfate adenylyltransferase compare
BPHYT_RS03655 -2.2 -1.4 membrane protein compare
BPHYT_RS33690 -2.1 -1.7 molybdate ABC transporter permease compare
BPHYT_RS32860 -2.1 -1.0 hypothetical protein compare
BPHYT_RS13220 -2.1 -5.8 phosphomethylpyrimidine synthase compare
BPHYT_RS30610 -2.1 -1.8 major facilitator transporter compare
BPHYT_RS04095 -2.0 -1.2 SAM-dependent methyltransferase PhcB compare
BPHYT_RS14845 -2.0 -2.3 cysteine synthase compare
BPHYT_RS04965 -2.0 -5.2 ATP-binding protein compare
BPHYT_RS11310 -2.0 -1.2 LysR family transcriptional regulator compare
BPHYT_RS02010 -1.9 -1.0 copper homeostasis protein CutC compare
BPHYT_RS10345 -1.9 -0.8 flagellar motor protein MotB compare
BPHYT_RS05010 -1.9 -3.7 RpiR family transcriptional regulator compare
BPHYT_RS02880 -1.9 -1.0 ATP-dependent protease compare
BPHYT_RS13605 -1.9 -1.0 tRNA-Pro compare
BPHYT_RS15620 -1.9 -2.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS28365 -1.9 -1.4 Germin subfamily 1 member 15 compare
BPHYT_RS21470 -1.8 -1.6 6-hydroxynicotinate reductase compare
BPHYT_RS07130 -1.8 -1.5 biopolymer transporter ExbD compare
BPHYT_RS17395 -1.8 -1.6 anthranilate synthase subunit II compare
BPHYT_RS05020 -1.8 -3.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS08340 -1.8 -0.4 chemotaxis protein CheY compare
BPHYT_RS13320 -1.8 -1.1 allantoate amidohydrolase compare
BPHYT_RS02955 -1.7 -5.3 formyltetrahydrofolate deformylase compare
BPHYT_RS04010 -1.7 -1.0 glycosyl transferase compare
BPHYT_RS02865 -1.7 -3.7 hypothetical protein compare
BPHYT_RS11825 -1.7 -1.0 cytosine deaminase compare
BPHYT_RS01590 -1.7 -4.9 methionine biosynthesis protein MetW compare
BPHYT_RS18990 -1.7 -2.8 chemotaxis protein compare
BPHYT_RS26525 -1.7 -1.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS05030 -1.7 -1.3 sugar ABC transporter permease compare
BPHYT_RS28535 -1.6 -0.8 response regulator receiver compare
BPHYT_RS21995 -1.5 -3.4 (2Fe-2S)-binding protein compare
BPHYT_RS11970 -1.5 -1.1 cupin compare
BPHYT_RS17380 -1.5 -4.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS03570 -1.5 -6.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS27175 -1.5 -0.8 DNA-binding protein compare
BPHYT_RS14400 -1.5 -2.5 anti-sigma factor compare
BPHYT_RS33765 -1.5 -0.9 membrane protein compare
BPHYT_RS02135 -1.5 -1.7 glyoxylate reductase compare
BPHYT_RS10270 -1.5 -2.2 D-amino acid dehydrogenase compare
BPHYT_RS31525 -1.5 -2.2 hypothetical protein compare
BPHYT_RS09000 -1.5 -0.9 competence protein ComE compare
BPHYT_RS17100 -1.5 -4.3 RNA pyrophosphohydrolase compare
BPHYT_RS10540 -1.4 -1.1 secretion protein compare
BPHYT_RS24350 -1.4 -1.7 hypothetical protein compare
BPHYT_RS20070 -1.4 -2.1 hypothetical protein compare
BPHYT_RS28830 -1.4 -1.0 LysR family transcriptional regulator compare
BPHYT_RS03400 -1.4 -1.3 ATP-dependent DNA helicase RecG compare
BPHYT_RS03875 -1.4 -1.4 dehydrogenase compare
BPHYT_RS33360 -1.4 -1.8 formyl-CoA transferase compare
BPHYT_RS09145 -1.4 -4.8 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS36275 -1.4 -2.0 hypothetical protein compare
BPHYT_RS09435 -1.4 -1.7 MarR family transcriptional regulator compare
BPHYT_RS09155 -1.4 -5.0 3-ketoacyl-ACP reductase compare
BPHYT_RS18760 -1.4 -1.5 flagellar biosynthesis protein FliT compare
BPHYT_RS16815 -1.3 -1.2 ureidoglycolate hydrolase compare
BPHYT_RS27495 -1.3 -0.9 hypothetical protein compare
BPHYT_RS34240 -1.3 -1.9 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS05965 -1.3 -3.0 2-aminoadipate aminotransferase compare
BPHYT_RS04875 -1.3 -1.5 alpha-ribazole phosphatase compare
BPHYT_RS15710 -1.3 -1.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS25585 -1.3 -1.4 membrane protein compare
BPHYT_RS15190 -1.3 -1.0 acyl carrier protein compare
BPHYT_RS06550 -1.3 -1.8 acetolactate synthase compare
BPHYT_RS22580 -1.3 -1.7 transcriptional regulator compare
BPHYT_RS28905 -1.3 -1.4 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS08950 -1.3 -3.8 aminotransferase compare
BPHYT_RS02600 -1.3 -1.6 glutaredoxin compare
BPHYT_RS33850 -1.3 -1.2 sporulation protein compare
BPHYT_RS25780 -1.3 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS21385 -1.3 -1.3 short-chain dehydrogenase compare
BPHYT_RS21585 -1.3 -1.8 short-chain dehydrogenase compare
BPHYT_RS00325 -1.3 -1.2 hypothetical protein compare
BPHYT_RS35945 -1.3 -2.2 response regulator receiver compare
BPHYT_RS11405 -1.3 -1.3 hypothetical protein compare
BPHYT_RS02570 -1.3 -3.1 phosphocarrier protein HPr compare
BPHYT_RS16135 -1.3 -2.9 ABC transporter ATP-binding protein compare
BPHYT_RS11705 -1.2 -1.2 hypothetical protein compare
BPHYT_RS06435 -1.2 -1.3 hypothetical protein compare
BPHYT_RS05880 -1.2 -1.7 hypothetical protein compare
BPHYT_RS00380 -1.2 -1.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS22145 -1.2 -1.4 phosphoesterase compare
BPHYT_RS15015 -1.2 -1.1 ArsR family transcriptional regulator compare
BPHYT_RS36150 -1.2 -1.6 hypothetical protein compare
BPHYT_RS19675 -1.2 -1.6 hypothetical protein compare
BPHYT_RS20085 -1.2 -1.2 mannosyltransferase compare
BPHYT_RS10850 -1.2 -1.2 LysR family transcriptional regulator compare
BPHYT_RS13325 -1.2 -2.2 TetR family transcriptional regulator compare
BPHYT_RS00110 -1.2 -2.3 ethanolamine ammonia-lyase small subunit compare
BPHYT_RS34235 -1.2 -1.9 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS04990 -1.2 -1.7 hypothetical protein compare
BPHYT_RS17035 -1.2 -1.8 sugar kinase compare
BPHYT_RS27810 -1.2 -2.3 nitroreductase compare
BPHYT_RS01965 -1.2 -1.1 tRNA-Ala compare
BPHYT_RS36440 -1.2 -1.6 hypothetical protein compare
BPHYT_RS03755 -1.2 -1.4 pilus assembly protein PilE compare
BPHYT_RS02285 -1.2 -3.1 cell division protein compare
BPHYT_RS08545 -1.1 -1.0 oxidoreductase compare
BPHYT_RS14900 -1.1 -1.5 prephenate dehydrogenase compare
BPHYT_RS09280 -1.1 -0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS05730 -1.1 -1.8 hypothetical protein compare
BPHYT_RS12465 -1.1 -1.9 inositol monophosphatase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nitrogen source experiments

For nitrogen source L-Serine across organisms