Experiment set3IT058 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sisomicin sulfate salt 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26620 -3.6 -3.5 ArsR family transcriptional regulator compare
AO353_09915 -3.2 -7.1 long-chain acyl-CoA thioester hydrolase compare
AO353_08170 -3.1 -3.0 hypothetical protein compare
AO353_09060 -3.1 -2.1 hypothetical protein compare
AO353_26845 -2.7 -6.0 acriflavine resistance protein B compare
AO353_23615 -2.7 -3.6 peptidase S54 compare
AO353_15900 -2.6 -1.8 GTP-binding protein compare
AO353_07610 -2.6 -1.5 hypothetical protein compare
AO353_26835 -2.6 -2.5 transcriptional regulator compare
AO353_27500 -2.5 -1.7 hypothetical protein compare
AO353_04035 -2.5 -2.4 exclusion suppressor FxsA compare
AO353_00510 -2.5 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_00505 -2.4 -1.7 3-ketoacyl-CoA thiolase compare
AO353_02765 -2.4 -2.8 NAD(P)H-quinone oxidoreductase compare
AO353_15290 -2.4 -5.6 methyltransferase compare
AO353_09315 -2.4 -7.3 LysR family transcriptional regulator compare
AO353_22800 -2.3 -2.3 sulfite reductase compare
AO353_20810 -2.3 -2.2 hypothetical protein compare
AO353_28110 -2.2 -4.0 TetR family transcriptional regulator compare
AO353_13130 -2.2 -3.0 N-acetylmuramoyl-L-alanine amidase compare
AO353_12650 -2.2 -1.3 hypothetical protein compare
AO353_19840 -2.2 -2.3 hypothetical protein compare
AO353_12145 -2.1 -2.1 nitrogen regulation protein NR(I) compare
AO353_08970 -2.1 -4.6 disulfide bond formation protein B compare
AO353_13155 -2.1 -1.5 hypothetical protein compare
AO353_22655 -2.1 -4.7 hypothetical protein compare
AO353_11945 -2.1 -1.2 4-oxalocrotonate tautomerase compare
AO353_21595 -2.1 -5.0 serine/threonine protein kinase compare
AO353_07075 -2.1 -2.8 elongation factor Tu compare
AO353_17290 -2.1 -3.1 multidrug transporter compare
AO353_17880 -2.1 -3.9 hypothetical protein compare
AO353_09720 -2.1 -2.0 hypothetical protein compare
AO353_07645 -2.0 -1.4 sarcosine oxidase subunit gamma compare
AO353_25505 -2.0 -5.5 4-amino-4-deoxy-L-arabinose transferase compare
AO353_15490 -2.0 -1.8 hypothetical protein compare
AO353_13160 -2.0 -1.4 membrane protease HflC compare
AO353_14975 -2.0 -3.7 hypothetical protein compare
AO353_09950 -2.0 -4.1 aspartate ammonia-lyase compare
AO353_06745 -1.9 -2.3 zinc-binding protein compare
AO353_07495 -1.9 -10.2 acyl-CoA dehydrogenase compare
AO353_03410 -1.9 -2.4 chemotaxis protein CheY compare
AO353_20200 -1.9 -2.9 peptidylprolyl isomerase compare
AO353_08100 -1.9 -2.6 chemotaxis protein CheY compare
AO353_00515 -1.9 -2.5 hypothetical protein compare
AO353_27695 -1.9 -4.9 isocitrate dehydrogenase compare
AO353_03590 -1.9 -1.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_06415 -1.9 -2.8 hypothetical protein compare
AO353_03775 -1.8 -5.0 pyruvate kinase compare
AO353_03540 -1.8 -3.9 7-carboxy-7-deazaguanine synthase compare
AO353_26870 -1.8 -2.7 AP endonuclease compare
AO353_23710 -1.8 -3.4 protein BatD compare
AO353_15785 -1.8 -5.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_18480 -1.8 -8.5 potassium transporter TrkH compare
AO353_05010 -1.8 -2.0 HopJ type III effector protein compare
AO353_05840 -1.7 -8.8 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_14860 -1.7 -2.9 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_08110 -1.7 -2.8 glutathione synthetase compare
AO353_10065 -1.7 -4.9 hypothetical protein compare
AO353_08095 -1.7 -5.4 protein PilI compare
AO353_25815 -1.7 -3.0 hypothetical protein compare
AO353_23715 -1.7 -4.6 hypothetical protein compare
AO353_26840 -1.7 -2.2 RND transporter compare
AO353_08245 -1.7 -2.3 cell division ATP-binding protein FtsE compare
AO353_04490 -1.6 -6.2 murein transglycosylase compare
AO353_26390 -1.6 -1.9 glyoxalase compare
AO353_17175 -1.6 -1.9 beta-ketoadipyl CoA thiolase compare
AO353_03360 -1.6 -4.9 glucose-6-phosphate dehydrogenase compare
AO353_08350 -1.6 -4.6 hypothetical protein compare
AO353_06320 -1.6 -2.7 AsnC family transcriptional regulator compare
AO353_08085 -1.6 -7.9 histidine kinase conserved
AO353_21355 -1.6 -2.2 xylose isomerase compare
AO353_15280 -1.6 -3.4 hypothetical protein compare
AO353_23005 -1.6 -2.6 hypothetical protein compare
AO353_23725 -1.6 -3.7 hypothetical protein compare
AO353_17995 -1.6 -4.3 hypothetical protein compare
AO353_13865 -1.6 -2.2 hypothetical protein compare
AO353_09275 -1.6 -2.4 DNA-directed RNA polymerase subunit omega compare
AO353_15270 -1.6 -3.5 phospholipid-binding protein compare
AO353_25550 -1.6 -3.8 4-amino-4-deoxy-L-arabinose transferase compare
AO353_29365 -1.6 -2.0 paraquat-inducible protein A compare
AO353_12790 -1.6 -1.7 hypothetical protein compare
AO353_13225 -1.6 -1.9 50S ribosomal protein L9 compare
AO353_12880 -1.6 -2.1 ADP-heptose--LPS heptosyltransferase compare
AO353_26285 -1.6 -1.4 hypothetical protein compare
AO353_24595 -1.6 -2.1 hypothetical protein compare
AO353_12015 -1.6 -2.1 antitoxin compare
AO353_02995 -1.6 -5.1 succinylglutamate desuccinylase compare
AO353_03715 -1.6 -1.8 H-NS histone compare
AO353_10625 -1.6 -7.7 potassium transporter peripheral membrane component compare
AO353_02250 -1.6 -1.1 chorismate synthase compare
AO353_17165 -1.6 -2.2 ATP-dependent helicase compare
AO353_08020 -1.5 -5.2 hypothetical protein compare
AO353_19605 -1.5 -2.0 hypothetical protein compare
AO353_07515 -1.5 -1.8 transporter compare
AO353_09030 -1.5 -1.2 iron donor protein CyaY compare
AO353_28425 -1.5 -2.0 TetR family transcriptional regulator compare
AO353_01795 -1.5 -2.0 hypothetical protein compare
AO353_06585 -1.5 -3.2 hypothetical protein compare
AO353_09890 -1.5 -3.3 phosphate ABC transporter ATP-binding protein compare
AO353_22785 -1.5 -4.1 peptidase compare
AO353_21455 -1.5 -1.7 cation:proton antiporter compare
AO353_19280 -1.5 -1.7 hypothetical protein compare
AO353_11455 -1.5 -1.7 hypothetical protein compare
AO353_10725 -1.5 -1.0 dodecin flavoprotein compare
AO353_28960 -1.5 -2.6 Fis family transcriptional regulator compare
AO353_22645 -1.5 -1.4 hypothetical protein compare
AO353_06455 -1.4 -1.7 D-alanyl-D-alanine carboxypeptidase compare
AO353_02520 -1.4 -2.3 sodium transporter compare
AO353_08080 -1.4 -4.1 chemotaxis protein compare
AO353_04440 -1.4 -3.5 hypothetical protein compare
AO353_20840 -1.4 -1.7 ribose pyranase compare
AO353_12625 -1.4 -2.2 hypothetical protein compare
AO353_02940 -1.4 -2.5 DNA-binding protein compare
AO353_22530 -1.4 -2.5 hypothetical protein compare
AO353_03815 -1.4 -1.4 heme utilization protein compare
AO353_22685 -1.4 -1.0 peroxidase compare
AO353_04365 -1.4 -3.0 recombinase XerD compare
AO353_05415 -1.4 -1.6 hypothetical protein compare
AO353_20115 -1.4 -2.5 LysR family transcriptional regulator compare
AO353_24190 -1.4 -2.4 hypothetical protein compare
AO353_09345 -1.4 -1.6 hypothetical protein compare
AO353_12085 -1.4 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_00345 -1.4 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO353_07290 -1.4 -5.4 mannose-1-phosphate guanylyltransferase compare
AO353_27130 -1.3 -1.5 hypothetical protein compare
AO353_10055 -1.3 -5.9 DNA helicase II compare
AO353_13405 -1.3 -1.7 urease accessory protein UreF compare
AO353_08345 -1.3 -4.8 dihydroxy-acid dehydratase compare
AO353_13685 -1.3 -2.9 3-dehydroquinate dehydratase compare
AO353_07920 -1.3 -3.1 hypothetical protein compare
AO353_19060 -1.3 -2.9 CysB family transcriptional regulator compare
AO353_02085 -1.3 -3.8 methylthioribose-1-phosphate isomerase compare
AO353_22520 -1.3 -1.7 hypothetical protein compare
AO353_16530 -1.3 -1.2 ribonuclease HII compare
AO353_17625 -1.3 -5.0 RNA polymerase subunit sigma compare
AO353_10930 -1.3 -4.0 DNA polymerase I compare
AO353_21425 -1.3 -2.8 hypothetical protein compare
AO353_14370 -1.3 -3.6 glucose-6-phosphate isomerase compare
AO353_18960 -1.3 -1.5 terminase compare
AO353_16025 -1.3 -2.6 hypothetical protein compare
AO353_08240 -1.3 -7.6 cell division protein FtsX compare
AO353_14505 -1.3 -6.4 ketol-acid reductoisomerase compare
AO353_20530 -1.3 -3.1 hypothetical protein compare
AO353_03420 -1.2 -2.1 phosphogluconate dehydratase compare
AO353_12460 -1.2 -3.5 malate dehydrogenase compare
AO353_21640 -1.2 -1.4 cobalt transporter compare
AO353_21350 -1.2 -2.9 methylmalonate-semialdehyde dehydrogenase compare
AO353_16495 -1.2 -3.7 zinc metallopeptidase RseP compare
AO353_29160 -1.2 -2.4 GTP pyrophosphokinase compare
AO353_12270 -1.2 -2.4 histidine ammonia-lyase compare
AO353_13220 -1.2 -3.4 hypothetical protein compare
AO353_09250 -1.2 -1.4 exodeoxyribonuclease III compare
AO353_10500 -1.2 -2.2 acetylornithine aminotransferase compare
AO353_08060 -1.2 -1.9 hypothetical protein compare
AO353_05690 -1.2 -1.4 SsrA-binding protein compare
AO353_20495 -1.2 -1.4 NUDIX hydrolase compare
AO353_11850 -1.2 -2.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_27895 -1.2 -3.3 isochorismatase compare
AO353_25165 -1.2 -2.7 ATP-NAD kinase compare
AO353_20170 -1.2 -1.6 trigger factor compare
AO353_03010 -1.2 -4.4 succinylglutamate-semialdehyde dehydrogenase compare
AO353_12765 -1.2 -2.1 transcriptional regulator compare
AO353_13085 -1.2 -2.6 histidine kinase compare
AO353_02175 -1.2 -1.8 carbon storage regulator compare
AO353_15975 -1.2 -2.9 GntR family transcriptional regulator compare
AO353_11740 -1.2 -5.4 DNA damage response protein (yhgF like) (from data) compare
AO353_06040 -1.2 -1.9 exodeoxyribonuclease V subunit alpha compare
AO353_03005 -1.2 -3.2 succinylarginine dihydrolase compare
AO353_10430 -1.2 -2.1 chromosome partitioning protein ParB compare
AO353_23155 -1.2 -2.3 IclR family transcriptional regulator compare
AO353_25570 -1.2 -5.1 glycosyltransferase compare
AO353_02480 -1.1 -4.7 peptidylprolyl isomerase compare
AO353_02220 -1.1 -0.7 hypothetical protein compare
AO353_01190 -1.1 -1.3 hypothetical protein compare
AO353_26440 -1.1 -1.6 hypothetical protein compare
AO353_19760 -1.1 -2.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO353_28860 -1.1 -2.3 hypothetical protein compare
AO353_02440 -1.1 -5.4 peptidase S41 compare
AO353_21420 -1.1 -2.9 hypothetical protein compare
AO353_08725 -1.1 -4.1 aminotransferase DegT compare
AO353_26080 -1.1 -1.4 hypothetical protein compare
AO353_07325 -1.1 -1.1 diadenosine tetraphosphatase compare
AO353_18630 -1.1 -4.7 beta-ketoacyl-ACP synthase compare
AO353_19395 -1.1 -2.7 hypothetical protein compare
AO353_15265 -1.1 -2.9 peptidase compare
AO353_13720 -1.1 -6.9 arginine decarboxylase compare
AO353_09440 -1.1 -1.1 type VI secretion protein compare
AO353_26320 -1.1 -3.0 hypothetical protein compare
AO353_21935 -1.1 -1.4 nitrite reductase compare
AO353_00900 -1.1 -4.1 2-methylisocitrate lyase compare
AO353_02715 -1.1 -2.6 23S rRNA methyltransferase compare
AO353_11720 -1.1 -2.0 taurine transporter ATP-binding subunit compare
AO353_02070 -1.1 -3.5 prephenate dehydratase compare
AO353_21430 -1.1 -1.6 hypothetical protein compare
AO353_00885 -1.1 -1.8 3-methylitaconate isomerase compare
AO353_23485 -1.1 -5.0 lytic transglycosylase compare
AO353_12240 -1.1 -2.6 histidine utilization repressor compare
AO353_25980 -1.1 -2.7 ribosomal-protein-alanine acetyltransferase compare
AO353_00890 -1.1 -2.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_07800 -1.0 -3.1 transcriptional repressor BetI compare


Specific Phenotypes

For 43 genes in this experiment

For stress Sisomicin sulfate salt in Pseudomonas fluorescens FW300-N2E3

For stress Sisomicin sulfate salt across organisms