Experiment set3IT058 for Methanococcus maripaludis JJ

Compare to:

formate McAA p-aminobenzoic acid dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.7 17.3 hypothetical protein compare
MMJJ_RS04005 +0.8 6.0 acetate--CoA ligase family protein compare
MMJJ_RS08130 +0.8 0.9 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS06505 +0.7 3.2 prephenate dehydratase compare
MMJJ_RS08830 +0.7 4.3 hypothetical protein compare
MMJJ_RS07240 +0.7 5.7 MBL fold metallo-hydrolase compare
MMJJ_RS06675 +0.7 4.9 TIGR01212 family radical SAM protein compare
MMJJ_RS07920 +0.6 4.1 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS07185 +0.6 2.3 DUF371 domain-containing protein compare
MMJJ_RS07025 +0.6 3.2 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS05040 +0.6 4.2 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS07935 +0.6 0.6 protein fwdD compare
MMJJ_RS03725 +0.5 1.5 sulfurtransferase TusA family protein compare
MMJJ_RS03835 +0.5 2.7 DUF504 domain-containing protein compare
MMJJ_RS01855 +0.5 3.9 MBL fold metallo-hydrolase compare
MMJJ_RS07230 +0.5 3.4 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07225 +0.5 3.7 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS05685 +0.5 3.3 class III signal peptide-containing protein compare
MMJJ_RS07235 +0.5 4.3 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS04375 +0.5 1.4 hypothetical protein compare
MMJJ_RS04955 +0.5 2.7 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS08225 +0.5 2.0 peptidylprolyl isomerase compare
MMJJ_RS05780 +0.5 1.2 flagellin compare
MMJJ_RS04545 +0.5 2.0 PadR family transcriptional regulator compare
MMJJ_RS05580 +0.5 2.5 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS06460 +0.4 3.1 cytochrome c compare
MMJJ_RS09365 +0.4 1.4 hypothetical protein compare
MMJJ_RS06515 +0.4 3.4 ribonuclease III compare
MMJJ_RS06090 +0.4 2.7 hypothetical protein compare
MMJJ_RS08515 +0.4 2.2 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS05975 +0.4 2.4 sulfurtransferase TusA family protein compare
MMJJ_RS03360 +0.4 0.7 hypothetical protein compare
MMJJ_RS06540 +0.4 2.0 DUF2120 domain-containing protein compare
MMJJ_RS04105 +0.4 3.3 prepilin peptidase compare
MMJJ_RS03250 +0.4 1.5 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS08100 +0.4 2.1 hypothetical protein compare
MMJJ_RS07985 +0.4 2.0 hypothetical protein compare
MMJJ_RS07260 +0.4 2.7 PspC domain-containing protein compare
MMJJ_RS01670 +0.4 1.3 hypothetical protein compare
MMJJ_RS06205 +0.4 2.8 EamA family transporter compare
MMJJ_RS06275 +0.4 2.3 hypothetical protein compare
MMJJ_RS01970 +0.4 2.0 hypothetical protein compare
MMJJ_RS06440 +0.4 2.7 DUF4870 domain-containing protein compare
MMJJ_RS07210 +0.4 2.9 AmmeMemoRadiSam system protein B compare
MMJJ_RS01825 +0.4 1.6 DNA repair and recombination protein RadB compare
MMJJ_RS08810 +0.4 0.5 DUF4040 domain-containing protein compare
MMJJ_RS01010 +0.4 3.5 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS07915 +0.4 2.0 CBS domain-containing protein compare
MMJJ_RS03775 +0.4 1.0 50S ribosomal protein L15e compare
MMJJ_RS06470 +0.4 2.5 tripartite tricarboxylate transporter permease compare
MMJJ_RS03410 +0.4 1.5 hypothetical protein compare
MMJJ_RS06120 +0.4 2.5 DUF4013 domain-containing protein compare
MMJJ_RS06500 +0.4 2.0 class I SAM-dependent methyltransferase compare
MMJJ_RS07220 +0.3 2.8 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06210 +0.3 1.8 hypothetical protein compare
MMJJ_RS07825 +0.3 1.3 YciI family protein compare
MMJJ_RS02270 +0.3 1.4 HEPN domain-containing protein compare
MMJJ_RS07795 +0.3 2.0 cupin domain-containing protein compare
MMJJ_RS05605 +0.3 1.5 hypothetical protein compare
MMJJ_RS06740 +0.3 2.0 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS03515 +0.3 2.2 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS06765 +0.3 2.6 hypothetical protein compare
MMJJ_RS03575 +0.3 1.5 NUDIX hydrolase compare
MMJJ_RS04610 +0.3 1.8 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS02665 +0.3 0.9 methyl-accepting chemotaxis protein compare
MMJJ_RS07505 +0.3 0.4 DNA-directed RNA polymerase subunit K compare
MMJJ_RS06685 +0.3 2.6 S-layer protein compare
MMJJ_RS07800 +0.3 2.4 AMP-binding protein compare
MMJJ_RS07270 +0.3 2.0 ribonuclease HII compare
MMJJ_RS06580 +0.3 2.3 alanine dehydrogenase compare
MMJJ_RS06710 +0.3 2.4 TldD/PmbA family protein compare
MMJJ_RS06190 +0.3 2.2 7-cyano-7-deazaguanine synthase compare
MMJJ_RS03375 +0.3 1.3 hypothetical protein compare
MMJJ_RS05335 +0.3 1.4 heavy metal-binding domain-containing protein compare
MMJJ_RS00400 +0.3 1.1 tautomerase family protein compare
MMJJ_RS06535 +0.3 2.2 UPF0104 family protein compare
MMJJ_RS08870 +0.3 0.4 2-isopropylmalate synthase compare
MMJJ_RS05915 +0.3 0.9 multiprotein bridging factor aMBF1 compare
MMJJ_RS07740 +0.3 2.0 DUF2334 domain-containing protein compare
MMJJ_RS07815 +0.3 1.9 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS06810 +0.3 2.2 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06960 +0.3 2.3 CAP domain-containing protein compare
MMJJ_RS00145 +0.3 2.2 aquaporin family protein compare
MMJJ_RS06680 +0.3 1.7 DUF366 family protein compare
MMJJ_RS05660 +0.3 1.6 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS07035 +0.3 0.5 glycosyl transferase compare
MMJJ_RS07495 +0.3 1.6 4Fe-4S binding protein compare
MMJJ_RS06735 +0.3 1.8 cobalt ECF transporter T component CbiQ compare
MMJJ_RS01055 +0.3 1.6 hypothetical protein compare
MMJJ_RS04850 +0.3 1.6 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS05960 +0.3 1.9 DUF169 domain-containing protein compare
MMJJ_RS06950 +0.3 1.7 4-demethylwyosine synthase TYW1 compare
MMJJ_RS04215 +0.3 2.2 DMT family transporter compare
MMJJ_RS08305 +0.3 1.6 peroxiredoxin compare
MMJJ_RS06640 +0.3 1.7 YfcE family phosphodiesterase compare
MMJJ_RS05525 +0.2 1.6 GTP-binding protein compare
MMJJ_RS05530 +0.2 1.0 roadblock/LC7 domain-containing protein compare
MMJJ_RS05390 +0.2 1.9 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS07040 +0.2 0.4 preprotein translocase subunit SecY compare
MMJJ_RS01790 +0.2 1.7 pyridoxamine 5'-phosphate oxidase family protein compare
MMJJ_RS06550 +0.2 1.8 ABC transporter permease compare
MMJJ_RS06790 +0.2 2.0 nucleotidyltransferase family protein compare
MMJJ_RS08165 +0.2 1.3 thermonuclease family protein compare
MMJJ_RS07010 +0.2 1.6 preprotein translocase subunit Sec61beta compare
MMJJ_RS05520 +0.2 1.9 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS06450 +0.2 1.9 DUF3343 domain-containing protein compare
MMJJ_RS08380 +0.2 0.6 hypothetical protein compare
MMJJ_RS04780 +0.2 0.9 nucleic acid-binding protein compare
MMJJ_RS05500 +0.2 2.1 hypothetical protein compare
MMJJ_RS00420 +0.2 1.4 CBS domain-containing protein compare
MMJJ_RS06585 +0.2 1.6 alanine racemase compare
MMJJ_RS01095 +0.2 1.6 site-specific integrase compare
MMJJ_RS07200 +0.2 1.7 MFS transporter compare
MMJJ_RS08315 +0.2 1.7 DNA protection protein DPS compare
MMJJ_RS08745 +0.2 1.8 glycosyltransferase family 9 protein compare
MMJJ_RS06745 +0.2 1.3 energy-coupling factor ABC transporter permease compare
MMJJ_RS00740 +0.2 1.4 hypothetical protein compare
MMJJ_RS03595 +0.2 1.3 hypothetical protein compare
MMJJ_RS08410 +0.2 0.7 CBS domain-containing protein compare
MMJJ_RS06135 +0.2 1.7 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS05700 +0.2 1.5 metallophosphoesterase compare
MMJJ_RS04580 +0.2 1.7 2-phosphosulfolactate phosphatase compare
MMJJ_RS08285 +0.2 1.6 class I SAM-dependent methyltransferase compare
MMJJ_RS00745 +0.2 0.7 hypothetical protein compare
MMJJ_RS09360 +0.2 1.5 hypothetical protein compare
MMJJ_RS06770 +0.2 1.7 hypothetical protein compare
MMJJ_RS07820 +0.2 1.6 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS03040 +0.2 1.5 lactate utilization protein compare
MMJJ_RS08015 +0.2 1.1 HAD family hydrolase compare
MMJJ_RS04585 +0.2 1.5 phenylacetate--CoA ligase compare
MMJJ_RS05715 +0.2 1.6 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS00170 +0.2 1.0 thioredoxin family protein compare
MMJJ_RS06520 +0.2 1.5 TldD/PmbA family protein compare
MMJJ_RS05200 +0.2 1.6 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS07280 +0.2 1.3 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS05990 +0.2 1.3 phosphatase PAP2 family protein compare
MMJJ_RS07255 +0.2 1.7 hypothetical protein compare
MMJJ_RS06430 +0.2 1.1 haloacid dehalogenase compare
MMJJ_RS05355 +0.2 1.3 DUF2121 domain-containing protein compare
MMJJ_RS04510 +0.2 1.5 hypothetical protein compare
MMJJ_RS04420 +0.2 1.6 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS06280 +0.2 1.4 hypothetical protein compare
MMJJ_RS07695 +0.2 1.6 glycoside hydrolase family 15 protein compare
MMJJ_RS08485 +0.2 0.8 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS03605 +0.2 0.8 TIGR00297 family protein compare
MMJJ_RS05585 +0.2 1.3 hypothetical protein compare
MMJJ_RS07680 +0.2 1.2 glucose-6-phosphate isomerase compare
MMJJ_RS06045 +0.2 1.1 hypothetical protein compare
MMJJ_RS02880 +0.2 1.2 hypothetical protein compare
MMJJ_RS01955 +0.2 1.5 hypothetical protein compare
MMJJ_RS05965 +0.2 1.5 MFS transporter compare
MMJJ_RS05350 +0.2 0.8 DUF192 domain-containing protein compare
MMJJ_RS08365 +0.2 1.0 DsrE family protein compare
MMJJ_RS06555 +0.2 1.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS00900 +0.2 0.6 PC4/YdbC family ssDNA-binding protein compare
MMJJ_RS06100 +0.2 1.1 rubrerythrin compare
MMJJ_RS04830 +0.2 0.9 zinc dependent phospholipase C family protein compare
MMJJ_RS03795 +0.2 1.3 PQQ-binding-like beta-propeller repeat protein compare
MMJJ_RS05235 +0.2 1.5 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS09145 +0.2 1.1 exodeoxyribonuclease III compare
MMJJ_RS05835 +0.2 1.4 bis-aminopropyl spermidine synthase family protein compare
MMJJ_RS05385 +0.2 1.2 hypothetical protein compare
MMJJ_RS05405 +0.2 1.3 DNA cytosine methyltransferase compare
MMJJ_RS06455 +0.2 1.3 YeeE/YedE family protein compare
MMJJ_RS01845 +0.2 1.2 acetolactate decarboxylase compare
MMJJ_RS08350 +0.2 1.4 heavy metal translocating P-type ATPase compare
MMJJ_RS04745 +0.2 0.8 cyclase family protein compare
MMJJ_RS03320 +0.2 0.6 hypothetical protein compare
MMJJ_RS05665 +0.2 1.2 hypothetical protein compare
MMJJ_RS01310 +0.2 1.2 phenylacetate--CoA ligase compare
MMJJ_RS08705 +0.2 1.0 AEC family transporter compare
MMJJ_RS07480 +0.2 1.3 FAD-dependent oxidoreductase compare
MMJJ_RS05245 +0.2 1.1 type II secretion system F family protein compare
MMJJ_RS01510 +0.2 1.2 ATP-binding protein compare
MMJJ_RS01950 +0.2 1.1 hypothetical protein compare
MMJJ_RS06285 +0.2 1.0 YchF/TatD family DNA exonuclease compare
MMJJ_RS08025 +0.2 0.7 hypothetical protein compare
MMJJ_RS07835 +0.2 1.1 UPF0489 family protein compare
MMJJ_RS03045 +0.2 1.1 hypothetical protein compare
MMJJ_RS06130 +0.2 0.9 hypothetical protein compare
MMJJ_RS07885 +0.2 1.1 NERD domain-containing protein compare
MMJJ_RS00150 +0.2 0.9 DUF2180 family protein compare
MMJJ_RS02170 +0.2 0.9 2-thiouracil desulfurase family protein compare
MMJJ_RS04825 +0.2 1.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MMJJ_RS01795 +0.2 1.0 TIGR00266 family protein compare
MMJJ_RS08735 +0.1 1.3 hypothetical protein compare
MMJJ_RS07005 +0.1 0.7 transcription factor S compare
MMJJ_RS00090 +0.1 1.1 4Fe-4S binding protein compare
MMJJ_RS06590 +0.1 1.1 sodium:alanine symporter family protein compare
MMJJ_RS06495 +0.1 0.5 hypothetical protein compare
MMJJ_RS08395 +0.1 1.2 CoB--CoM heterodisulfide reductase subunit B compare
MMJJ_RS00320 +0.1 0.7 chemotaxis protein CheD compare
MMJJ_RS06080 +0.1 1.1 serine/threonine protein kinase compare
MMJJ_RS02160 +0.1 1.0 amino acid ABC transporter permease compare
MMJJ_RS08455 +0.1 0.8 tetratricopeptide repeat protein compare
MMJJ_RS05980 +0.1 0.9 DUF5400 domain-containing protein compare
MMJJ_RS05690 +0.1 1.3 hypothetical protein compare
MMJJ_RS01270 +0.1 0.9 4Fe-4S binding protein compare
MMJJ_RS00500 +0.1 0.6 GNAT family N-acetyltransferase compare
MMJJ_RS08275 +0.1 1.3 iron ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments