Experiment set3IT057 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
AO353_15900 -3.5 -3.3 GTP-binding protein compare
AO353_06455 -3.4 -3.3 D-alanyl-D-alanine carboxypeptidase compare
AO353_10950 -3.2 -10.5 thiol:disulfide interchange protein compare
AO353_27725 -3.1 -3.6 GNAT family acetyltransferase compare
AO353_02020 -3.0 -4.1 hypothetical protein compare
AO353_05150 -2.7 -4.5 ABC transporter ATP-binding protein compare
AO353_09720 -2.7 -3.0 hypothetical protein compare
AO353_02440 -2.7 -11.0 peptidase S41 compare
AO353_10930 -2.7 -7.9 DNA polymerase I compare
AO353_15905 -2.7 -6.6 outer membrane protein assembly factor BamB compare
AO353_05135 -2.6 -9.1 toluene tolerance protein compare
AO353_17645 -2.6 -11.3 peptidase M48 compare
AO353_04565 -2.6 -5.7 nucleoid-associated protein compare
AO353_17675 -2.6 -6.0 hypothetical protein compare
AO353_18540 -2.6 -1.8 pseudouridine synthase compare
AO353_07140 -2.5 -16.2 peptidase M23 compare
AO353_16495 -2.5 -6.9 zinc metallopeptidase RseP compare
AO353_03590 -2.4 -3.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_05240 -2.4 -2.8 rod shape-determining protein MreD compare
AO353_27720 -2.4 -5.4 cupin compare
AO353_02025 -2.4 -9.1 mannose-1-phosphate guanyltransferase compare
AO353_09235 -2.3 -6.7 phosphoglucomutase compare
AO353_01975 -2.3 -5.3 glycosyl transferase compare
AO353_02015 -2.3 -6.7 acetyltransferase compare
AO353_05145 -2.3 -6.0 ABC transporter permease compare
AO353_00330 -2.3 -7.7 hypothetical protein compare
AO353_13130 -2.3 -4.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_01995 -2.2 -11.0 hypothetical protein compare
AO353_16825 -2.2 -5.5 hypothetical protein compare
AO353_20185 -2.2 -6.5 DNA-binding protein compare
AO353_06415 -2.2 -5.0 hypothetical protein compare
AO353_20910 -2.1 -5.8 MerR family transcriptional regulator compare
AO353_05140 -2.1 -7.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_08245 -2.1 -3.6 cell division ATP-binding protein FtsE compare
AO353_02000 -2.1 -3.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_20860 -2.1 -3.0 hypothetical protein compare
AO353_22685 -2.0 -3.3 peroxidase compare
AO353_01990 -2.0 -6.5 UDP-N-acetylglucosamine 2-epimerase compare
AO353_10995 -2.0 -10.1 hypothetical protein compare
AO353_08115 -2.0 -5.1 energy transducer TonB compare
AO353_04220 -2.0 -6.3 chemotaxis protein CheY compare
AO353_15270 -2.0 -3.8 phospholipid-binding protein compare
AO353_16925 -2.0 -13.7 AmpG family muropeptide MFS transporter compare
AO353_20680 -2.0 -4.6 cell division protein compare
AO353_12110 -2.0 -7.9 peptidase M23 compare
AO353_10730 -1.9 -2.2 hypothetical protein compare
AO353_14475 -1.9 -13.3 penicillin-binding protein 1B compare
AO353_06040 -1.9 -3.8 exodeoxyribonuclease V subunit alpha compare
AO353_11750 -1.9 -2.8 ATPase compare
AO353_15170 -1.9 -2.5 cytochrome D ubiquinol oxidase subunit III compare
AO353_01345 -1.9 -10.2 aminodeoxychorismate lyase conserved
AO353_10055 -1.9 -10.5 DNA helicase II compare
AO353_02010 -1.9 -5.7 glycosyl transferase family 1 compare
AO353_08265 -1.9 -5.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_22280 -1.8 -2.7 hypothetical protein compare
AO353_06045 -1.8 -6.5 exodeoxyribonuclease V subunit beta compare
AO353_02940 -1.8 -2.5 DNA-binding protein compare
AO353_23730 -1.8 -3.3 hypothetical protein compare
AO353_07145 -1.8 -8.2 anhydro-N-acetylmuramic acid kinase compare
AO353_00455 -1.8 -2.1 beta-hexosaminidase compare
AO353_02480 -1.8 -7.6 peptidylprolyl isomerase conserved
AO353_15875 -1.8 -4.7 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_00430 -1.8 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_17625 -1.7 -7.4 RNA polymerase subunit sigma compare
AO353_08240 -1.7 -12.0 cell division protein FtsX conserved
AO353_03580 -1.7 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_09320 -1.7 -8.4 ATP-dependent DNA helicase RecG compare
AO353_06050 -1.7 -6.1 exodeoxyribonuclease V subunit gamma compare
AO353_01980 -1.7 -9.4 NAD-dependent dehydratase compare
AO353_12935 -1.7 -4.4 glycosyltransferase compare
AO353_20265 -1.7 -2.4 spore coat protein compare
AO353_01355 -1.7 -6.9 3-oxoacyl-ACP synthase compare
AO353_15445 -1.7 -3.8 disulfide bond formation protein B compare
AO353_08620 -1.7 -2.0 hypothetical protein compare
AO353_02280 -1.7 -1.9 DNA mismatch repair protein MutS compare
AO353_01985 -1.7 -7.3 hypothetical protein compare
AO353_18485 -1.6 -4.1 nitroreductase compare
AO353_10430 -1.6 -3.9 chromosome partitioning protein ParB compare
AO353_15290 -1.6 -6.8 methyltransferase compare
AO353_18775 -1.6 -6.6 flagellar biosynthesis protein FlhF compare
AO353_01970 -1.6 -8.0 hypothetical protein compare
AO353_23930 -1.6 -4.2 chemotaxis protein CheY compare
AO353_17640 -1.6 -2.5 serine peptidase compare
AO353_00765 -1.6 -8.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_27855 -1.6 -2.5 MarR family transcriptional regulator compare
AO353_16805 -1.5 -5.1 recombinase RecA compare
AO353_18285 -1.5 -3.3 3-phosphoglycerate kinase compare
AO353_09915 -1.5 -6.3 long-chain acyl-CoA thioester hydrolase compare
AO353_14480 -1.5 -7.7 hypothetical protein compare
AO353_01795 -1.5 -3.0 hypothetical protein compare
AO353_07935 -1.5 -4.0 hypothetical protein compare
AO353_17070 -1.5 -7.1 hypothetical protein compare
AO353_07295 -1.5 -9.7 aminoglycoside phosphotransferase compare
AO353_27650 -1.5 -3.5 cell division protein FtsK compare
AO353_06460 -1.5 -5.0 hypothetical protein compare
AO353_27585 -1.5 -2.5 DNA repair protein compare
AO353_05130 -1.4 -1.2 anti-anti-sigma factor compare
AO353_01405 -1.4 -5.1 23S rRNA pseudouridylate synthase compare
AO353_02815 -1.4 -4.4 transcriptional regulator compare
AO353_10445 -1.4 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_14225 -1.4 -7.3 laccase compare
AO353_03360 -1.4 -6.3 glucose-6-phosphate dehydrogenase compare
AO353_24535 -1.4 -1.9 hypothetical protein compare
AO353_03585 -1.4 -2.9 ATP-dependent DNA helicase RuvA compare
AO353_05690 -1.4 -3.1 SsrA-binding protein compare
AO353_14990 -1.4 -2.0 hypothetical protein compare
AO353_08465 -1.4 -10.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_12790 -1.3 -2.3 hypothetical protein compare
AO353_11055 -1.3 -6.5 Holliday junction resolvase compare
AO353_20200 -1.3 -3.5 peptidylprolyl isomerase compare
AO353_13060 -1.3 -5.4 hypothetical protein compare
AO353_06275 -1.3 -3.0 DNA polymerase III subunit epsilon compare
AO353_08255 -1.3 -7.2 peptidase M16 compare
AO353_09115 -1.3 -4.7 diguanylate cyclase compare
AO353_07290 -1.3 -5.0 mannose-1-phosphate guanylyltransferase compare
AO353_07610 -1.3 -1.3 hypothetical protein compare
AO353_25990 -1.3 -4.4 aspartyl beta-hydroxylase compare
AO353_18715 -1.2 -1.6 histidine kinase compare
AO353_12115 -1.2 -2.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_27685 -1.2 -3.5 cold-shock protein compare
AO353_08260 -1.2 -7.3 peptidase M16 compare
AO353_08735 -1.2 -6.7 glycine cleavage system protein T compare
AO353_02100 -1.2 -2.6 phosphoglycolate phosphatase compare
AO353_18660 -1.2 -6.5 AAA family ATPase compare
AO353_18780 -1.2 -5.2 cobyrinic acid a,c-diamide synthase compare
AO353_08350 -1.2 -5.3 hypothetical protein compare
AO353_23410 -1.2 -1.8 hypothetical protein compare
AO353_02045 -1.2 -5.1 hypothetical protein compare
AO353_10630 -1.1 -3.8 16S rRNA methyltransferase compare
AO353_09400 -1.1 -2.9 hypothetical protein compare
AO353_09240 -1.1 -2.7 acetylglutamate kinase compare
AO353_24915 -1.1 -1.9 hypothetical protein compare
AO353_05090 -1.1 -4.6 2-alkenal reductase compare
AO353_24130 -1.1 -1.3 hypothetical protein compare
AO353_28930 -1.1 -2.1 hypothetical protein compare
AO353_14950 -1.1 -7.2 hypothetical protein compare
AO353_14585 -1.1 -3.8 ribosomal-protein-alanine acetyltransferase compare
AO353_28960 -1.1 -2.8 Fis family transcriptional regulator compare
AO353_26835 -1.1 -2.8 transcriptional regulator compare
AO353_25015 -1.1 -2.6 polyketide cyclase compare
AO353_08470 -1.1 -2.8 RNA pyrophosphohydrolase compare
AO353_12105 -1.1 -4.1 peptidase S41 compare
AO353_03545 -1.1 -5.7 hypothetical protein compare
AO353_23495 -1.1 -2.2 SAM-dependent methyltransferase compare
AO353_05425 -1.1 -3.1 glycine/betaine ABC transporter permease compare
AO353_01410 -1.1 -2.7 ribonuclease E compare
AO353_03575 -1.1 -4.5 4-hydroxybenzoyl-CoA thioesterase compare
AO353_20585 -1.1 -2.5 TetR family transcriptional regulator compare
AO353_09885 -1.1 -1.8 transcriptional regulator PhoU compare
AO353_00355 -1.1 -2.0 transcriptional regulator compare
AO353_02515 -1.1 -4.6 recombination-associated protein RdgC compare
AO353_28425 -1.0 -2.7 TetR family transcriptional regulator compare
AO353_16375 -1.0 -1.1 hypothetical protein compare
AO353_05430 -1.0 -6.3 glycine/betaine ABC transporter substrate-binding protein conserved
AO353_01800 -1.0 -3.5 hypothetical protein compare
AO353_07105 -1.0 -1.1 biotin--protein ligase compare
AO353_26520 -1.0 -2.3 TetR family transcriptional regulator compare
AO353_17435 -1.0 -3.7 hypothetical protein compare
AO353_02595 -1.0 -1.8 cobalamin synthase compare
AO353_21580 -1.0 -3.8 type VI secretion protein compare
AO353_04135 -1.0 -4.2 bacterioferritin compare
AO353_14550 -1.0 -7.2 paraquat-inducible protein A compare
AO353_02600 -1.0 -1.7 alpha-ribazole phosphatase compare
AO353_00675 -1.0 -4.2 recombination protein RecR compare
AO353_00725 -1.0 -2.8 GntR family transcriptional regulator compare
AO353_11455 -1.0 -1.9 hypothetical protein compare
AO353_14485 -1.0 -1.1 pseudouridine synthase compare
AO353_08770 -1.0 -5.6 hypothetical protein compare
AO353_04900 -1.0 -3.7 energy transducer TonB compare
AO353_06585 -0.9 -3.6 hypothetical protein compare
AO353_04490 -0.9 -5.3 murein transglycosylase compare
AO353_07850 -0.9 -2.2 ATP-dependent RNA helicase compare
AO353_00825 -0.9 -2.0 porin compare
AO353_01135 -0.9 -1.9 enoyl-CoA hydratase compare
AO353_08980 -0.9 -1.9 heme biosynthesis operon protein HemX compare
AO353_19530 -0.9 -1.3 quinohemoprotein amine dehydrogenase compare
AO353_19290 -0.9 -2.4 molybdenum cofactor sulfurase compare
AO353_05465 -0.9 -6.1 flavodoxin compare
AO353_04175 -0.9 -2.8 glycerol uptake facilitator GlpF compare
AO353_03870 -0.9 -3.2 LysR family transcriptional regulator compare
AO353_03605 -0.9 -0.9 FmdB family transcriptional regulator compare
AO353_29340 -0.9 -1.9 transporter compare
AO353_10495 -0.9 -2.3 serine hydroxymethyltransferase compare
AO353_14775 -0.9 -3.4 hypothetical protein compare
AO353_10825 -0.9 -6.0 hypothetical protein compare
AO353_14420 -0.9 -2.5 molecular chaperone DnaK compare
AO353_20565 -0.8 -0.9 tRNA-Ala compare
AO353_05550 -0.8 -3.1 pseudouridine synthase compare
AO353_14555 -0.8 -6.0 paraquat-inducible protein A compare
AO353_28945 -0.8 -1.2 potassium-transporting ATPase subunit B compare
AO353_20700 -0.8 -2.6 oxidoreductase compare
AO353_12710 -0.8 -1.1 thioredoxin compare
AO353_17940 -0.8 -1.9 hypothetical protein compare
AO353_12135 -0.8 -2.5 rRNA methylase compare
AO353_14795 -0.8 -2.6 molybdopterin-synthase adenylyltransferase compare
AO353_27215 -0.8 -1.8 hypothetical protein compare
AO353_21290 -0.8 -2.0 hypothetical protein compare
AO353_29215 -0.8 -1.6 alpha/beta hydrolase compare
AO353_03595 -0.8 -2.3 hypothetical protein compare
AO353_12020 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

For 29 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium nitrate across organisms