Experiment set3IT057 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium nitrate 200 mM

Group: stress
Media: LB + Sodium nitrate (200 mM)
Culturing: pseudo3_N2E3_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 6/18/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 943 B3,B4

Specific Phenotypes

For 29 genes in this experiment

For stress Sodium nitrate in Pseudomonas fluorescens FW300-N2E3

For stress Sodium nitrate across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter alkylphosphonate (TC 3.A.1.9.1) 2
Peptidoglycan Biosynthesis 2
ABC transporter dipeptide (TC 3.A.1.5.2) 1
Bacterial Cell Division 1
Bacterial Chemotaxis 1
Bacterial hemoglobins 1
Choline and Betaine Uptake and Betaine Biosynthesis 1
Glycine and Serine Utilization 1
Glycine cleavage system 1
Oxidative stress 1
Photorespiration (oxidative C2 cycle) 1
Type IV pilus 1
Ubiquinone Biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
S-methyl-5'-thioadenosine degradation II 1 1 1
4-hydroxybenzoate biosynthesis II (bacteria) 1 1 1
adenine and adenosine salvage III 4 4 3
adenine and adenosine salvage V 3 2 2
adenine and adenosine salvage I 2 2 1
purine ribonucleosides degradation 6 5 3
adenosine nucleotides degradation II 5 5 2
glycine biosynthesis II 3 3 1
glycine degradation 3 3 1
glycine cleavage 3 3 1
peptidoglycan maturation (meso-diaminopimelate containing) 12 4 3
polybrominated phenols biosynthesis 4 1 1
purine nucleotides degradation II (aerobic) 11 11 2
peptidoglycan biosynthesis IV (Enterococcus faecium) 17 12 3
peptidoglycan biosynthesis II (staphylococci) 17 12 3
spongiadioxin C biosynthesis 7 2 1
polybrominated dihydroxylated diphenyl ethers biosynthesis 8 2 1
peptidoglycan biosynthesis V (β-lactam resistance) 17 11 2
folate transformations III (E. coli) 9 9 1
photorespiration III 9 5 1
photorespiration I 9 5 1
reductive glycine pathway of autotrophic CO2 fixation 9 5 1
ubiquinol-8 biosynthesis (late decarboxylation) 9 4 1
p-HBAD biosynthesis 9 1 1
photorespiration II 10 6 1
nucleoside and nucleotide degradation (archaea) 10 2 1
L-methionine salvage cycle III 11 10 1
folate transformations II (plants) 11 10 1
peptidoglycan biosynthesis I (meso-diaminopimelate containing) 12 12 1
superpathway of ubiquinol-8 biosynthesis (early decarboxylation) 12 10 1
folate transformations I 13 9 1
superpathway of purine nucleotide salvage 14 13 1
tetrahydromethanopterin biosynthesis 14 3 1
peptidoglycan biosynthesis III (mycobacteria) 15 11 1
superpathway of polybrominated aromatic compound biosynthesis 20 2 1
phenolphthiocerol biosynthesis 23 1 1
superpathway of chorismate metabolism 59 43 1