Experiment set3IT057 for Methanococcus maripaludis JJ

Compare to:

formate McAA B12 dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.4 -24.1 hypothetical protein compare
MMJJ_RS00580 -6.0 -2.8 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05450 -5.5 -21.4 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS02920 -5.3 -2.9 30S ribosomal protein S27ae compare
MMJJ_RS02045 -5.2 -4.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03895 -5.1 -4.9 hydrogenase expression/formation protein HypE compare
MMJJ_RS05935 -4.6 -3.7 Era-like GTP-binding protein compare
MMJJ_RS07665 -4.6 -24.0 formate dehydrogenase subunit alpha compare
MMJJ_RS03840 -4.5 -3.1 DHH family phosphoesterase compare
MMJJ_RS05930 -4.5 -2.7 cell division protein SepF compare
MMJJ_RS08250 -4.5 -8.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS01870 -4.4 -2.7 methanogenesis marker 15 protein compare
MMJJ_RS07950 -4.4 -4.2 4Fe-4S binding protein compare
MMJJ_RS07670 -4.3 -18.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS01750 -4.2 -3.8 ferrous iron transport protein A compare
MMJJ_RS05950 -4.2 -4.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05575 -4.2 -6.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06875 -4.1 -3.5 hypothetical protein compare
MMJJ_RS00275 -4.1 -3.1 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06860 -4.1 -4.0 hypothetical protein compare
MMJJ_RS06840 -4.1 -3.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00370 -4.1 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06725 -4.0 -16.6 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS08330 -4.0 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS02090 -4.0 -7.2 tyramine--L-glutamate ligase compare
MMJJ_RS03620 -3.9 -7.1 DUF2097 domain-containing protein compare
MMJJ_RS06695 -3.9 -4.3 amidohydrolase compare
MMJJ_RS08320 -3.9 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04200 -3.9 -8.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06180 -3.9 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS06490 -3.9 -4.5 methanogenesis marker 2 protein compare
MMJJ_RS05535 -3.8 -14.2 hypothetical protein compare
MMJJ_RS03820 -3.8 -5.8 hydrogenase formation protein HypD compare
MMJJ_RS06255 -3.8 -8.4 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS07655 -3.8 -15.6 hypothetical protein compare
MMJJ_RS07945 -3.8 -4.1 4Fe-4S binding protein compare
MMJJ_RS03065 -3.7 -12.7 CBS domain-containing protein compare
MMJJ_RS07000 -3.7 -2.5 TrkH family potassium uptake protein compare
MMJJ_RS03615 -3.7 -4.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06240 -3.7 -4.1 dihydropteroate synthase-like protein compare
MMJJ_RS03125 -3.7 -6.0 GMC oxidoreductase compare
MMJJ_RS08000 -3.7 -10.5 HesA/MoeB/ThiF family protein compare
MMJJ_RS08020 -3.7 -8.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08625 -3.6 -8.1 magnesium/cobalt transporter CorA compare
MMJJ_RS00450 -3.6 -2.6 DUF126 domain-containing protein compare
MMJJ_RS01810 -3.6 -2.5 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05070 -3.6 -3.0 DNA primase catalytic subunit PriS compare
MMJJ_RS01935 -3.6 -5.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05620 -3.6 -5.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS07660 -3.5 -9.3 carbonic anhydrase compare
MMJJ_RS03580 -3.5 -5.1 TIGR00303 family protein compare
MMJJ_RS01415 -3.5 -4.2 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS05650 -3.5 -4.4 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS06750 -3.5 -3.4 homoaconitase large subunit compare
MMJJ_RS03875 -3.5 -5.4 CBS domain-containing protein compare
MMJJ_RS01755 -3.4 -3.3 ferrous iron transport protein B compare
MMJJ_RS08005 -3.4 -18.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS08795 -3.4 -3.6 phosphoglucosamine mutase compare
MMJJ_RS06040 -3.4 -5.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS00125 -3.4 -3.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS04155 -3.4 -9.5 hypothetical protein compare
MMJJ_RS03815 -3.4 -2.8 nascent polypeptide-associated complex protein compare
MMJJ_RS03660 -3.3 -5.5 DUF447 family protein compare
MMJJ_RS03670 -3.3 -5.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03800 -3.3 -11.7 aldolase compare
MMJJ_RS07190 -3.3 -5.4 RtcB family protein compare
MMJJ_RS06855 -3.3 -2.6 DUF2104 domain-containing protein compare
MMJJ_RS05655 -3.3 -7.9 HisA/HisF family protein compare
MMJJ_RS09375 -3.3 -2.5 hypothetical protein compare
MMJJ_RS08080 -3.2 -12.4 TIGR00300 family protein compare
MMJJ_RS04685 -3.2 -11.1 carbamoyltransferase HypF compare
MMJJ_RS08660 -3.2 -4.3 acetylornithine transaminase compare
MMJJ_RS04995 -3.2 -8.0 Tfx family DNA-binding protein compare
MMJJ_RS05770 -3.2 -2.9 flagellar protein D compare
MMJJ_RS04800 -3.1 -8.2 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01815 -3.1 -5.2 DUF134 domain-containing protein compare
MMJJ_RS06915 -3.1 -13.2 helix-turn-helix domain-containing protein compare
MMJJ_RS05260 -3.1 -6.3 ATP-grasp domain-containing protein compare
MMJJ_RS03230 -3.1 -3.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08340 -3.1 -5.9 archaeoflavoprotein AfpA compare
MMJJ_RS08065 -3.0 -3.0 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS03295 -3.0 -15.7 PHP domain-containing protein compare
MMJJ_RS05490 -3.0 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS05810 -3.0 -8.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03095 -3.0 -3.8 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS03785 -3.0 -3.6 hypothetical protein compare
MMJJ_RS06910 -3.0 -4.3 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07720 -3.0 -1.9 UPF0058 family protein compare
MMJJ_RS07635 -3.0 -13.8 response regulator transcription factor compare
MMJJ_RS03150 -3.0 -8.3 2-phospho-L-lactate transferase compare
MMJJ_RS03110 -2.9 -5.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03830 -2.9 -12.0 CBS domain-containing protein compare
MMJJ_RS04655 -2.9 -7.1 FAD-dependent oxidoreductase compare
MMJJ_RS05590 -2.9 -2.5 homoserine dehydrogenase compare
MMJJ_RS00475 -2.8 -2.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS05610 -2.8 -5.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03200 -2.8 -2.7 uroporphyrinogen-III synthase compare
MMJJ_RS08055 -2.8 -6.2 methanogenesis marker 14 protein compare
MMJJ_RS04050 -2.8 -2.5 dihydroneopterin aldolase family protein compare
MMJJ_RS07650 -2.7 -18.1 formate/nitrite transporter family protein compare
MMJJ_RS03270 -2.7 -2.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS06785 -2.7 -7.7 RNA ligase partner protein compare
MMJJ_RS07995 -2.7 -6.3 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00570 -2.6 -2.6 ribonuclease P compare
MMJJ_RS01565 -2.6 -7.7 TIGR00267 family protein compare
MMJJ_RS07380 -2.6 -9.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08095 -2.6 -5.9 cobyric acid synthase CobQ compare
MMJJ_RS07410 -2.6 -4.4 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07640 -2.6 -18.3 cache domain-containing protein compare
MMJJ_RS08535 -2.6 -3.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01355 -2.6 -4.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS03060 -2.6 -2.6 methanogenesis marker 7 protein compare
MMJJ_RS02275 -2.6 -2.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08480 -2.6 -9.0 hydroxyethylthiazole kinase compare
MMJJ_RS07705 -2.6 -3.5 GTP-binding protein EngB compare
MMJJ_RS03630 -2.5 -12.2 AMP phosphorylase compare
MMJJ_RS05190 -2.5 -7.8 gamma carbonic anhydrase family protein compare
MMJJ_RS07350 -2.5 -4.9 4Fe-4S binding protein compare
MMJJ_RS01865 -2.5 -8.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS02935 -2.5 -3.6 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS04485 -2.5 -9.2 riboflavin synthase compare
MMJJ_RS04980 -2.5 -4.5 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS01600 -2.5 -3.4 radical SAM protein compare
MMJJ_RS09130 -2.4 -2.2 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS06375 -2.4 -5.0 UbiX family flavin prenyltransferase compare
MMJJ_RS04730 -2.4 -3.9 tyrosine decarboxylase MfnA compare
MMJJ_RS01360 -2.4 -2.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04675 -2.4 -5.9 thiamine pyrophosphate-binding protein compare
MMJJ_RS03810 -2.4 -3.3 AIR synthase-related protein compare
MMJJ_RS01345 -2.4 -4.1 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04615 -2.4 -4.8 methanogenesis marker 3 protein compare
MMJJ_RS03190 -2.4 -2.9 phosphopyruvate hydratase compare
MMJJ_RS06220 -2.3 -5.6 polyamine aminopropyltransferase compare
MMJJ_RS04790 -2.3 -4.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS00210 -2.3 -2.7 DUF530 family protein compare
MMJJ_RS01820 -2.3 -7.0 MJ1244 family protein compare
MMJJ_RS06250 -2.3 -3.1 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS04520 -2.3 -5.4 coenzyme F430 synthase compare
MMJJ_RS07785 -2.3 -3.6 fumarate reductase subunit A compare
MMJJ_RS06510 -2.3 -3.3 LL-diaminopimelate aminotransferase compare
MMJJ_RS06050 -2.3 -12.1 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01475 -2.3 -2.4 signal recognition particle-docking protein FtsY compare
MMJJ_RS03115 -2.2 -5.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06485 -2.2 -3.5 phosphoglycerate kinase compare
MMJJ_RS07725 -2.2 -7.3 DNA primase DnaG compare
MMJJ_RS07155 -2.2 -7.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07345 -2.2 -5.8 homocysteine biosynthesis protein compare
MMJJ_RS04985 -2.2 -4.7 glutamyl-tRNA reductase compare
MMJJ_RS04670 -2.2 -4.8 DUF2117 domain-containing protein compare
MMJJ_RS07430 -2.2 -4.3 ribonuclease VapC compare
MMJJ_RS06625 -2.1 -2.0 pyruvate synthase subunit PorB compare
MMJJ_RS06185 -2.1 -4.9 cobalamin biosynthesis protein compare
MMJJ_RS07355 -2.1 -5.9 MoaD/ThiS family protein compare
MMJJ_RS05445 -2.1 -2.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS01200 -2.1 -3.1 PRC-barrel domain-containing protein compare
MMJJ_RS05995 -2.1 -2.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS00270 -2.1 -3.7 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS06835 -2.1 -9.1 4Fe-4S binding protein compare
MMJJ_RS06225 -2.1 -2.5 adenosylmethionine decarboxylase compare
MMJJ_RS00600 -2.1 -3.3 hydroxymethylbilane synthase compare
MMJJ_RS04010 -2.1 -5.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS08155 -2.1 -3.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS08430 -2.1 -6.6 small nuclear ribonucleoprotein compare
MMJJ_RS01880 -2.1 -2.5 RlmE family RNA methyltransferase compare
MMJJ_RS08855 -2.1 -4.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04475 -2.1 -5.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05540 -2.1 -14.5 LysR family transcriptional regulator compare
MMJJ_RS05375 -2.0 -13.4 radical SAM protein compare
MMJJ_RS08335 -2.0 -2.0 ABC transporter ATP-binding protein compare
MMJJ_RS06175 -2.0 -3.0 DUF1743 domain-containing protein compare
MMJJ_RS03005 -2.0 -3.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04565 -2.0 -2.3 sirohydrochlorin nickelochelatase compare
MMJJ_RS07275 -2.0 -3.4 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS02055 -2.0 -11.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS06705 -2.0 -4.4 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05330 -2.0 -2.7 DNA polymerase II large subunit compare
MMJJ_RS03055 -1.9 -3.7 hypothetical protein compare
MMJJ_RS00560 -1.9 -3.5 homoisocitrate dehydrogenase compare
MMJJ_RS08840 -1.9 -4.0 calcium/sodium antiporter compare
MMJJ_RS01690 -1.9 -3.5 methanogenesis marker 12 protein compare
MMJJ_RS05295 -1.9 -8.8 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06170 -1.9 -8.9 hypothetical protein compare
MMJJ_RS04620 -1.9 -2.5 homocitrate synthase family protein compare
MMJJ_RS05765 -1.9 -1.4 flagellar protein E compare
MMJJ_RS04595 -1.9 -5.0 hypothetical protein compare
MMJJ_RS03845 -1.9 -3.4 translation initiation factor IF-2 compare
MMJJ_RS05415 -1.9 -2.1 hypothetical protein compare
MMJJ_RS02200 -1.9 -6.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS00355 -1.8 -2.8 ribonuclease P protein component 4 compare
MMJJ_RS07960 -1.8 -2.1 quinolinate synthase NadA compare
MMJJ_RS09175 -1.8 -1.8 anthranilate synthase component I compare
MMJJ_RS06010 -1.8 -6.4 hypothetical protein compare
MMJJ_RS08585 -1.8 -5.8 M42 family metallopeptidase compare
MMJJ_RS09190 -1.8 -2.3 tryptophan synthase subunit beta compare
MMJJ_RS07840 -1.8 -2.0 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS01410 -1.8 -4.8 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS07370 -1.8 -3.5 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS00215 -1.8 -2.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08190 -1.8 -2.8 hypothetical protein compare
MMJJ_RS00550 -1.8 -8.1 AIR synthase-related protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments