Experiment set3IT057 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Sodium Chlorite 0.32 mM

200 most important genes:

  gene name fitness t score description  
ABZR86_RS09935 -5.6 -3.8 DUF4105 domain-containing protein compare
ABZR86_RS02215 -5.4 -3.7 FHA domain-containing protein compare
ABZR86_RS10840 -5.1 -4.9 Holliday junction branch migration protein RuvA compare
ABZR86_RS07215 -4.8 -4.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ABZR86_RS20595 -4.6 -2.6 DUF6587 family protein compare
ABZR86_RS20605 -4.6 -2.6 FeoA family protein compare
ABZR86_RS12885 -4.5 -3.1 magnesium-translocating P-type ATPase compare
ABZR86_RS20600 -4.3 -9.9 ferrous iron transporter B compare
ABZR86_RS09885 -4.1 -2.8 trypsin-like peptidase domain-containing protein compare
ABZR86_RS08015 -4.0 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS05910 -4.0 -6.6 cupin domain-containing protein compare
ABZR86_RS06690 -3.9 -5.4 acireductone synthase compare
ABZR86_RS20640 -3.8 -11.8 translational GTPase TypA compare
ABZR86_RS13880 -3.8 -2.9 peptide deformylase compare
ABZR86_RS06580 -3.6 -4.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS06260 -3.6 -5.6 MBL fold metallo-hydrolase compare
ABZR86_RS07965 -3.4 -4.5 MarR family transcriptional regulator compare
ABZR86_RS11655 -3.2 -6.9 SLC13 family permease compare
ABZR86_RS20775 -3.2 -5.3 TetR/AcrR family transcriptional regulator compare
ABZR86_RS12680 -3.1 -7.2 DNA-binding domain-containing protein compare
ABZR86_RS07310 -3.1 -6.0 tRNA-Val compare
ABZR86_RS07175 -3.0 -5.7 sigma-E factor negative regulatory protein compare
ABZR86_RS19225 -3.0 -5.1 site-specific tyrosine recombinase XerD compare
ABZR86_RS11650 -3.0 -8.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
ABZR86_RS17160 -3.0 -7.7 malonic semialdehyde reductase compare
ABZR86_RS08415 -3.0 -4.5 OmpA family protein compare
ABZR86_RS18355 -3.0 -2.1 PepSY domain-containing protein compare
ABZR86_RS02185 -2.9 -9.7 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS11485 -2.9 -5.9 hypothetical protein compare
ABZR86_RS12675 -2.9 -8.9 DUF692 domain-containing protein conserved
ABZR86_RS14930 -2.8 -8.8 exodeoxyribonuclease III compare
ABZR86_RS12790 -2.8 -4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS19710 -2.8 -15.7 glycosyltransferase family 2 protein compare
ABZR86_RS07665 -2.8 -3.9 exodeoxyribonuclease V subunit beta compare
ABZR86_RS12780 -2.7 -5.9 pteridine reductase compare
ABZR86_RS10635 -2.7 -11.7 aldo/keto reductase compare
ABZR86_RS16195 -2.6 -9.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR86_RS19515 -2.4 -10.3 molybdopterin cofactor-binding domain-containing protein compare
ABZR86_RS10830 -2.4 -2.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS00660 -2.4 -4.2 recombinase RecA compare
ABZR86_RS15115 -2.3 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR86_RS07180 -2.3 -5.0 RNA polymerase sigma factor RpoE compare
ABZR86_RS15025 -2.3 -5.7 tyrosine recombinase XerC compare
ABZR86_RS09075 -2.3 -1.6 NrsF family protein compare
ABZR86_RS08865 -2.3 -1.8 30S ribosomal protein S18 compare
ABZR86_RS06590 -2.2 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS21725 -2.2 -9.8 YhdP family protein compare
ABZR86_RS15020 -2.2 -2.3 DUF484 family protein compare
ABZR86_RS05445 -2.2 -3.6 helix-turn-helix domain-containing protein compare
ABZR86_RS10790 -2.1 -3.2 7-carboxy-7-deazaguanine synthase QueE compare
ABZR86_RS21435 -2.1 -5.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS19340 -2.1 -9.8 peptide-methionine (S)-S-oxide reductase MsrA conserved
ABZR86_RS12005 -2.1 -2.1 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS19520 -2.1 -3.5 (2Fe-2S)-binding protein compare
ABZR86_RS12685 -2.1 -8.5 AraC family transcriptional regulator compare
ABZR86_RS14700 -2.0 -5.0 glucose-6-phosphate dehydrogenase compare
ABZR86_RS19865 -2.0 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS21480 -2.0 -7.2 arginase family protein compare
ABZR86_RS05700 -2.0 -2.8 SsrA-binding protein SmpB compare
ABZR86_RS11885 -1.9 -3.9 ATP-binding cassette domain-containing protein compare
ABZR86_RS10785 -1.9 -9.6 7-cyano-7-deazaguanine synthase QueC compare
ABZR86_RS07265 -1.9 -4.1 protein phosphatase 2C domain-containing protein compare
ABZR86_RS03435 -1.9 -7.9 GTP cyclohydrolase II compare
ABZR86_RS13865 -1.9 -1.3 DNA topoisomerase I compare
ABZR86_RS09540 -1.9 -5.7 tRNA guanosine(34) transglycosylase Tgt compare
ABZR86_RS11955 -1.8 -7.4 cytochrome ubiquinol oxidase subunit I conserved
ABZR86_RS18780 -1.8 -2.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS21365 -1.8 -4.5 hypothetical protein compare
ABZR86_RS11960 -1.8 -6.4 cytochrome d ubiquinol oxidase subunit II conserved
ABZR86_RS20195 -1.8 -1.4 flagellar hook-length control protein FliK compare
ABZR86_RS06780 -1.7 -4.7 CvpA family protein compare
ABZR86_RS14690 -1.7 -5.2 phosphogluconate dehydratase compare
ABZR86_RS13910 -1.7 -11.8 glycosyltransferase compare
ABZR86_RS07560 -1.7 -7.6 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS07660 -1.7 -3.2 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS13915 -1.7 -9.6 glycosyltransferase family 2 protein compare
ABZR86_RS15760 -1.7 -9.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR86_RS07305 -1.7 -1.3 tRNA-Asp compare
ABZR86_RS16415 -1.7 -10.8 FAD-binding oxidoreductase compare
ABZR86_RS13500 -1.7 -3.0 accessory factor UbiK family protein compare
ABZR86_RS10205 -1.6 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS06265 -1.6 -4.0 3-deoxy-D-manno-octulosonic acid kinase compare
ABZR86_RS08250 -1.6 -1.8 phosphate signaling complex protein PhoU compare
ABZR86_RS09660 -1.6 -2.0 MerR family transcriptional regulator compare
ABZR86_RS17145 -1.6 -11.0 LTA synthase family protein compare
ABZR86_RS22010 -1.6 -5.3 redox-regulated ATPase YchF compare
ABZR86_RS11900 -1.6 -2.6 ribonuclease PH compare
ABZR86_RS19235 -1.5 -3.5 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS15990 -1.5 -2.1 hypothetical protein compare
ABZR86_RS09545 -1.5 -5.3 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA conserved
ABZR86_RS18885 -1.5 -4.4 met regulon transcriptional regulator MetJ compare
ABZR86_RS18695 -1.5 -5.6 hypothetical protein compare
ABZR86_RS17510 -1.5 -10.7 carboxy terminal-processing peptidase compare
ABZR86_RS13380 -1.5 -1.7 Sec-independent protein translocase subunit TatA compare
ABZR86_RS13935 -1.5 -4.2 lipid A biosynthesis acyltransferase compare
ABZR86_RS07165 -1.5 -7.5 translation elongation factor 4 compare
ABZR86_RS18775 -1.5 -2.4 nucleotidyltransferase family protein compare
ABZR86_RS01150 -1.5 -1.3 hypothetical protein compare
ABZR86_RS13545 -1.5 -6.5 glycosyltransferase family 2 protein compare
ABZR86_RS02210 -1.5 -2.7 polyhydroxyalkanoic acid system family protein compare
ABZR86_RS13900 -1.4 -4.6 glycosyltransferase compare
ABZR86_RS07300 -1.4 -7.6 SurA N-terminal domain-containing protein compare
ABZR86_RS00805 -1.4 -4.1 polynucleotide adenylyltransferase PcnB compare
ABZR86_RS18690 -1.4 -5.8 DUF4398 domain-containing protein compare
ABZR86_RS05440 -1.4 -5.6 tetratricopeptide repeat protein compare
ABZR86_RS11380 -1.4 -6.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
ABZR86_RS18585 -1.4 -6.0 polysaccharide biosynthesis/export family protein compare
ABZR86_RS11870 -1.4 -7.4 phospholipid-binding protein MlaC compare
ABZR86_RS17425 -1.4 -0.8 16S ribosomal RNA compare
ABZR86_RS08490 -1.4 -3.0 alkyl hydroperoxide reductase subunit C compare
ABZR86_RS21355 -1.4 -2.7 septum site-determining protein MinD compare
ABZR86_RS19980 -1.4 -5.7 AsmA family protein compare
ABZR86_RS01755 -1.4 -4.2 helix-turn-helix domain-containing protein compare
ABZR86_RS05645 -1.3 -6.8 molecular chaperone DnaJ compare
ABZR86_RS14875 -1.3 -9.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR86_RS09080 -1.3 -5.2 sigma-70 family RNA polymerase sigma factor compare
ABZR86_RS13650 -1.3 -3.1 6-carboxytetrahydropterin synthase QueD compare
ABZR86_RS07580 -1.3 -3.4 metalloregulator ArsR/SmtB family transcription factor compare
ABZR86_RS14785 -1.3 -1.4 hypothetical protein compare
ABZR86_RS08270 -1.3 -7.7 ribonuclease R compare
ABZR86_RS18640 -1.3 -6.1 class I fructose-bisphosphate aldolase compare
ABZR86_RS19315 -1.3 -6.8 nucleoside deaminase compare
ABZR86_RS06785 -1.3 -4.4 SPOR domain-containing protein compare
ABZR86_RS09805 -1.3 -8.7 lysophospholipid acyltransferase family protein compare
ABZR86_RS11875 -1.3 -5.8 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR86_RS08860 -1.3 -3.2 50S ribosomal protein L9 compare
ABZR86_RS09605 -1.3 -5.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS03430 -1.2 -2.1 putative quinol monooxygenase compare
ABZR86_RS13905 -1.2 -6.5 glycosyltransferase family 1 protein compare
ABZR86_RS07130 -1.2 -7.8 hypothetical protein compare
ABZR86_RS20820 -1.2 -1.2 CsbD family protein compare
ABZR86_RS04640 -1.2 -4.7 FecR domain-containing protein compare
ABZR86_RS11250 -1.2 -7.8 peptide-methionine (R)-S-oxide reductase MsrB conserved
ABZR86_RS16045 -1.2 -4.8 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS14610 -1.2 -1.1 conjugal transfer protein TrbN compare
ABZR86_RS13140 -1.2 -8.7 TatD family hydrolase compare
ABZR86_RS09865 -1.2 -4.3 glutathione S-transferase N-terminal domain-containing protein compare
ABZR86_RS00800 -1.2 -1.7 tRNA-Glu compare
ABZR86_RS21130 -1.2 -2.5 PadR family transcriptional regulator compare
ABZR86_RS15750 -1.2 -7.7 Tex family protein conserved
ABZR86_RS19805 -1.2 -5.0 HPr(Ser) kinase/phosphatase compare
ABZR86_RS09405 -1.2 -4.8 TolC family protein compare
ABZR86_RS11975 -1.1 -1.0 UPF0149 family protein compare
ABZR86_RS08265 -1.1 -2.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABZR86_RS15335 -1.1 -5.5 lysophospholipid acyltransferase family protein compare
ABZR86_RS07570 -1.1 -7.6 efflux RND transporter permease subunit compare
ABZR86_RS10315 -1.1 -4.1 Imm42 family immunity protein compare
ABZR86_RS16770 -1.1 -1.1 phage holin family protein compare
ABZR86_RS11815 -1.1 -4.5 penicillin-binding protein 1A compare
ABZR86_RS07160 -1.1 -3.6 signal peptidase I compare
ABZR86_RS13245 -1.1 -8.0 DEAD/DEAH box helicase compare
ABZR86_RS18155 -1.1 -5.0 hypothetical protein compare
ABZR86_RS18725 -1.1 -2.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS22045 -1.1 -8.0 tetratricopeptide repeat protein compare
ABZR86_RS08790 -1.1 -5.6 TRZ/ATZ family hydrolase compare
ABZR86_RS07565 -1.1 -7.9 efflux RND transporter periplasmic adaptor subunit compare
ABZR86_RS08050 -1.1 -4.8 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
ABZR86_RS15770 -1.0 -7.9 aminopeptidase N compare
ABZR86_RS03975 -1.0 -1.7 class I SAM-dependent methyltransferase compare
ABZR86_RS09085 -1.0 -7.0 cytochrome c biogenesis protein DipZ compare
ABZR86_RS19715 -1.0 -6.3 Dps family protein compare
ABZR86_RS13350 -1.0 -7.2 S41 family peptidase compare
ABZR86_RS18705 -1.0 -1.3 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS12720 -1.0 -5.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR86_RS19355 -1.0 -1.8 DNA-binding transcriptional regulator OxyR compare
ABZR86_RS16925 -1.0 -5.0 2Fe-2S iron-sulfur cluster-binding protein compare
ABZR86_RS12595 -1.0 -1.3 cell division ATP-binding protein FtsE compare
ABZR86_RS13920 -1.0 -6.3 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS19445 -1.0 -4.6 hypothetical protein compare
ABZR86_RS06595 -1.0 -3.7 5'/3'-nucleotidase SurE compare
ABZR86_RS13370 -1.0 -4.7 twin-arginine translocase subunit TatC compare
ABZR86_RS16235 -1.0 -2.2 hypothetical protein compare
ABZR86_RS19245 -1.0 -3.5 glycosyltransferase family 2 protein compare
ABZR86_RS16525 -1.0 -4.9 alpha/beta fold hydrolase compare
ABZR86_RS19795 -1.0 -4.3 PTS sugar transporter subunit IIA compare
ABZR86_RS11660 -1.0 -4.2 Rieske 2Fe-2S domain-containing protein compare
ABZR86_RS09380 -1.0 -3.8 response regulator transcription factor compare
ABZR86_RS07880 -0.9 -4.3 30S ribosomal protein THX compare
ABZR86_RS17210 -0.9 -7.1 TolC family outer membrane protein compare
ABZR86_RS10505 -0.9 -3.7 ribosomal protein S18-alanine N-acetyltransferase compare
ABZR86_RS08150 -0.9 -1.0 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR86_RS03035 -0.9 -1.0 CBS domain-containing protein compare
ABZR86_RS05820 -0.9 -2.4 GntR family transcriptional regulator compare
ABZR86_RS03640 -0.9 -2.4 DUF488 family protein compare
ABZR86_RS00580 -0.9 -3.6 protease HtpX compare
ABZR86_RS09505 -0.9 -4.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR86_RS22035 -0.9 -1.3 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
ABZR86_RS01220 -0.9 -1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR86_RS10965 -0.9 -3.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ABZR86_RS07900 -0.9 -1.4 transcriptional repressor compare
ABZR86_RS14940 -0.9 -6.7 M3 family metallopeptidase compare
ABZR86_RS09415 -0.9 -4.3 ABC transporter ATP-binding protein compare
ABZR86_RS19645 -0.9 -1.9 hypothetical protein compare
ABZR86_RS18065 -0.8 -1.7 YciI family protein compare
ABZR86_RS13265 -0.8 -2.7 50S ribosomal protein L33 compare
ABZR86_RS21280 -0.8 -2.6 hypothetical protein compare
ABZR86_RS20215 -0.8 -1.6 flagellar motor switch protein FliM compare
ABZR86_RS00830 -0.8 -4.5 glucose-6-phosphate isomerase compare
ABZR86_RS09385 -0.8 -2.3 sensor histidine kinase compare
ABZR86_RS15975 -0.8 -4.9 threonine synthase (EC 4.2.3.1) (from data) compare


Specific Phenotypes

For 34 genes in this experiment

For stress Sodium Chlorite in Dyella japonica UNC79MFTsu3.2

For stress Sodium Chlorite across organisms