Experiment set3IT057 for Dyella japonica UNC79MFTsu3.2

Compare to:

LB with Sodium Chlorite 0.32 mM

200 most detrimental genes:

  gene name fitness t score description  
ABZR86_RS08195 +5.6 40.1 SulP family inorganic anion transporter compare
ABZR86_RS08200 +4.0 6.8 carbonic anhydrase compare
ABZR86_RS12895 +3.3 24.0 heme o synthase compare
ABZR86_RS08355 +3.2 22.5 FtsH protease activity modulator HflK compare
ABZR86_RS11275 +2.9 23.1 Co2+/Mg2+ efflux protein ApaG compare
ABZR86_RS16680 +2.8 15.6 AI-2E family transporter compare
ABZR86_RS22135 +2.8 15.5 hypothetical protein compare
ABZR86_RS06000 +2.6 15.3 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS08350 +2.6 14.5 protease modulator HflC compare
ABZR86_RS05995 +2.5 23.2 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS10530 +2.5 6.6 H-NS histone family protein compare
ABZR86_RS00570 +2.4 11.8 acetoacetyl-CoA reductase compare
ABZR86_RS07320 +2.3 20.8 endopeptidase La compare
ABZR86_RS07625 +2.3 17.2 ubiquinol oxidase subunit II compare
ABZR86_RS10020 +2.2 16.0 CDP-glucose 4,6-dehydratase compare
ABZR86_RS21335 +2.1 4.2 response regulator transcription factor compare
ABZR86_RS18365 +2.1 19.5 ATP-binding protein compare
ABZR86_RS07620 +2.1 16.9 cytochrome o ubiquinol oxidase subunit I compare
ABZR86_RS11825 +2.0 6.6 citrate synthase compare
ABZR86_RS07610 +2.0 14.2 cytochrome o ubiquinol oxidase subunit IV compare
ABZR86_RS01945 +2.0 5.1 preprotein translocase subunit SecG compare
ABZR86_RS10010 +1.9 14.8 class I SAM-dependent methyltransferase compare
ABZR86_RS11280 +1.8 14.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR86_RS12900 +1.8 12.8 heme A synthase compare
ABZR86_RS11665 +1.7 7.4 hypothetical protein compare
ABZR86_RS18615 +1.7 4.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS10155 +1.6 3.6 HAMP domain-containing sensor histidine kinase compare
ABZR86_RS07615 +1.6 9.9 cytochrome o ubiquinol oxidase subunit III compare
ABZR86_RS16400 +1.6 12.5 pseudouridine synthase compare
ABZR86_RS06570 +1.5 5.9 ribosome assembly RNA-binding protein YhbY compare
ABZR86_RS12280 +1.5 3.4 dihydrolipoyl dehydrogenase compare
ABZR86_RS15640 +1.5 2.7 orotate phosphoribosyltransferase compare
ABZR86_RS21340 +1.5 12.6 sensor histidine kinase compare
ABZR86_RS12920 +1.4 12.0 cytochrome c oxidase subunit 3 compare
ABZR86_RS04490 +1.3 9.4 hypothetical protein compare
ABZR86_RS09990 +1.3 10.6 oligosaccharide flippase family protein compare
ABZR86_RS12210 +1.3 8.8 c-type cytochrome compare
ABZR86_RS07630 +1.3 5.6 MFS transporter compare
ABZR86_RS08480 +1.2 5.6 methylisocitrate lyase compare
ABZR86_RS18880 +1.2 5.7 glycine cleavage system protein GcvH compare
ABZR86_RS12730 +1.2 6.3 endonuclease/exonuclease/phosphatase family protein compare
ABZR86_RS19280 +1.2 1.9 peptide deformylase compare
ABZR86_RS00705 +1.2 6.7 Ppx/GppA phosphatase family protein compare
ABZR86_RS13515 +1.2 7.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS13815 +1.2 8.8 bacterioferritin compare
ABZR86_RS16405 +1.2 8.6 ABC transporter permease compare
ABZR86_RS12450 +1.2 7.8 Grx4 family monothiol glutaredoxin compare
ABZR86_RS10015 +1.1 4.9 dTDP-4-dehydrorhamnose 3,5-epimerase family protein compare
ABZR86_RS18360 +1.1 9.0 response regulator transcription factor compare
ABZR86_RS19555 +1.1 7.5 fumarate hydratase compare
ABZR86_RS11515 +1.1 8.5 nucleoside permease compare
ABZR86_RS13055 +1.1 8.5 glucokinase compare
ABZR86_RS02200 +1.1 9.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS10120 +1.1 9.2 TonB-dependent receptor compare
ABZR86_RS12410 +1.1 4.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS14870 +1.1 1.8 AAA family ATPase compare
ABZR86_RS12930 +1.1 7.6 cytochrome c oxidase subunit II compare
ABZR86_RS06355 +1.1 4.4 folate-binding protein YgfZ compare
ABZR86_RS05455 +1.0 6.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR86_RS05635 +1.0 7.3 sodium:calcium antiporter compare
ABZR86_RS11670 +1.0 3.8 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABZR86_RS17095 +1.0 5.7 protein-disulfide reductase DsbD compare
ABZR86_RS19860 +1.0 7.5 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS12490 +1.0 7.3 AMP nucleosidase compare
ABZR86_RS09130 +1.0 5.6 paraquat-inducible protein A compare
ABZR86_RS18815 +1.0 4.7 FAD-binding protein compare
ABZR86_RS10450 +1.0 5.0 kinase compare
ABZR86_RS13940 +1.0 1.7 D-aminoacyl-tRNA deacylase compare
ABZR86_RS00285 +1.0 2.9 hypothetical protein compare
ABZR86_RS11100 +1.0 7.4 fructose porter FruP (from data) compare
ABZR86_RS09300 +1.0 8.2 C40 family peptidase compare
ABZR86_RS09930 +1.0 2.5 transporter associated domain-containing protein compare
ABZR86_RS18675 +1.0 6.0 phosphoglycerate kinase compare
ABZR86_RS10035 +1.0 7.3 glycosyltransferase family 2 protein compare
ABZR86_RS14795 +1.0 3.4 hypothetical protein compare
ABZR86_RS20965 +1.0 2.1 hypothetical protein compare
ABZR86_RS07380 +0.9 3.2 metalloregulator ArsR/SmtB family transcription factor compare
ABZR86_RS03340 +0.9 2.8 GPW/gp25 family protein compare
ABZR86_RS07120 +0.9 5.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABZR86_RS19845 +0.9 1.4 BolA/IbaG family iron-sulfur metabolism protein compare
ABZR86_RS01440 +0.9 1.6 hypothetical protein compare
ABZR86_RS12835 +0.9 5.6 DedA family protein compare
ABZR86_RS08435 +0.9 5.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS08700 +0.9 3.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS16120 +0.9 2.8 lysoplasmalogenase compare
ABZR86_RS08565 +0.9 4.9 peptidylprolyl isomerase compare
ABZR86_RS02795 +0.9 2.0 phosphoglycerate mutase compare
ABZR86_RS09120 +0.9 6.4 MlaD family protein compare
ABZR86_RS15840 +0.9 4.9 biotin synthase BioB compare
ABZR86_RS02740 +0.9 3.5 NfuA family Fe-S biogenesis protein compare
ABZR86_RS08430 +0.9 2.2 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS12220 +0.8 2.8 Mpo1-like protein compare
ABZR86_RS19910 +0.8 2.7 inorganic phosphate transporter compare
ABZR86_RS11620 +0.8 6.6 30S ribosomal protein S6--L-glutamate ligase compare
ABZR86_RS09245 +0.8 6.2 RNA polymerase-associated protein RapA compare
ABZR86_RS09995 +0.8 5.1 CmcI family methyltransferase compare
ABZR86_RS15830 +0.8 4.8 sulfurtransferase compare
ABZR86_RS02400 +0.8 1.4 hypothetical protein compare
ABZR86_RS07705 +0.8 2.5 TIGR03862 family flavoprotein compare
ABZR86_RS09985 +0.8 5.5 glycosyltransferase compare
ABZR86_RS14800 +0.8 6.1 MASE1 domain-containing protein compare
ABZR86_RS12505 +0.8 5.2 SDR family oxidoreductase compare
ABZR86_RS20340 +0.8 1.3 nuclear transport factor 2 family protein compare
ABZR86_RS16040 +0.8 1.1 molybdopterin-dependent oxidoreductase compare
ABZR86_RS08755 +0.8 2.1 membrane protein insertion efficiency factor YidD compare
ABZR86_RS05880 +0.8 5.3 siroheme synthase CysG compare
ABZR86_RS16310 +0.8 6.3 c-type cytochrome compare
ABZR86_RS20240 +0.8 1.4 flagellar biosynthetic protein FliR compare
ABZR86_RS02725 +0.8 5.8 RluA family pseudouridine synthase compare
ABZR86_RS09810 +0.8 3.2 YhgN family NAAT transporter compare
ABZR86_RS21200 +0.8 4.4 MmcQ/YjbR family DNA-binding protein compare
ABZR86_RS02750 +0.8 6.0 cytochrome c compare
ABZR86_RS12200 +0.8 3.5 ribulose-phosphate 3-epimerase compare
ABZR86_RS17155 +0.8 4.8 mitochondrial fission ELM1 family protein compare
ABZR86_RS15235 +0.8 1.3 type II toxin-antitoxin system HipA family toxin YjjJ compare
ABZR86_RS10480 +0.8 2.8 3-dehydroquinate synthase compare
ABZR86_RS18830 +0.8 3.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS09115 +0.8 4.9 PqiC family protein compare
ABZR86_RS18460 +0.8 6.1 oligopeptide:H+ symporter compare
ABZR86_RS16290 +0.8 5.6 alpha/beta family hydrolase compare
ABZR86_RS16410 +0.7 2.9 ABC transporter ATP-binding protein compare
ABZR86_RS10000 +0.7 4.0 NAD(P)-dependent oxidoreductase compare
ABZR86_RS11245 +0.7 3.5 histone deacetylase family protein compare
ABZR86_RS09125 +0.7 5.7 paraquat-inducible protein A compare
ABZR86_RS15740 +0.7 6.6 DUF1481 domain-containing protein compare
ABZR86_RS06575 +0.7 4.9 Mth938-like domain-containing protein compare
ABZR86_RS09960 +0.7 3.1 pilin compare
ABZR86_RS17175 +0.7 3.4 zinc-finger domain-containing protein compare
ABZR86_RS10130 +0.7 3.5 hypothetical protein compare
ABZR86_RS12925 +0.7 5.1 cytochrome c oxidase subunit I compare
ABZR86_RS15000 +0.7 4.5 N-acetyltransferase compare
ABZR86_RS08410 +0.7 5.1 pseudouridine synthase compare
ABZR86_RS13710 +0.7 1.4 hypothetical protein compare
ABZR86_RS20235 +0.7 1.0 flagellar biosynthesis protein FliQ compare
ABZR86_RS10855 +0.7 2.8 alpha/beta fold hydrolase compare
ABZR86_RS02745 +0.7 5.2 cytochrome c compare
ABZR86_RS22190 +0.7 1.2 hypothetical protein compare
ABZR86_RS02245 +0.7 4.6 excinuclease ABC subunit UvrC compare
ABZR86_RS05020 +0.7 1.4 hypothetical protein compare
ABZR86_RS02110 +0.7 5.1 FMN-dependent NADH-azoreductase compare
ABZR86_RS21485 +0.7 5.3 GNAT family N-acetyltransferase compare
ABZR86_RS10025 +0.7 4.0 glucose-1-phosphate cytidylyltransferase compare
ABZR86_RS04980 +0.7 1.1 SPOR domain-containing protein compare
ABZR86_RS15550 +0.6 2.3 YceI family protein compare
ABZR86_RS08915 +0.6 1.1 hypothetical protein compare
ABZR86_RS21180 +0.6 4.4 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ compare
ABZR86_RS09395 +0.6 4.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS15200 +0.6 5.8 acetate--CoA ligase compare
ABZR86_RS18515 +0.6 2.5 UDP-2-acetamido-3-amino-2, 3-dideoxy-D-glucuronate N-acetyltransferase compare
ABZR86_RS01525 +0.6 1.4 ATP-binding protein compare
ABZR86_RS07350 +0.6 3.6 ribonuclease D compare
ABZR86_RS10150 +0.6 4.9 3-oxoacid CoA-transferase compare
ABZR86_RS09400 +0.6 4.0 MtnX-like HAD-IB family phosphatase compare
ABZR86_RS13645 +0.6 3.8 phasin family protein compare
ABZR86_RS13735 +0.6 1.6 flagellar biosynthetic protein FliO compare
ABZR86_RS02395 +0.6 2.1 hypothetical protein compare
ABZR86_RS13990 +0.6 2.1 IS30 family transposase compare
ABZR86_RS02170 +0.6 5.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABZR86_RS18875 +0.6 2.9 glycine cleavage system aminomethyltransferase GcvT compare
ABZR86_RS00715 +0.6 3.2 phosphate regulon sensor histidine kinase PhoR compare
ABZR86_RS08635 +0.6 4.5 elongation factor P-like protein YeiP compare
ABZR86_RS16285 +0.6 4.5 cell division protein ZapE compare
ABZR86_RS21710 +0.6 1.3 ribosome biogenesis factor YjgA compare
ABZR86_RS16245 +0.6 2.3 DUF2076 family protein compare
ABZR86_RS08550 +0.6 4.0 pyridoxal phosphate-dependent aminotransferase compare
ABZR86_RS16875 +0.6 5.0 hypothetical protein compare
ABZR86_RS18680 +0.6 2.3 maleylacetoacetate isomerase compare
ABZR86_RS06750 +0.6 3.7 histidine ammonia-lyase compare
ABZR86_RS12905 +0.6 1.7 hypothetical protein compare
ABZR86_RS02085 +0.6 2.1 hypothetical protein compare
ABZR86_RS09280 +0.6 4.5 amino acid permease compare
ABZR86_RS14580 +0.6 1.5 DUF3224 domain-containing protein compare
ABZR86_RS06775 +0.6 4.5 amidophosphoribosyltransferase compare
ABZR86_RS06630 +0.6 1.5 phosphopyruvate hydratase compare
ABZR86_RS06030 +0.6 0.9 transcription termination factor NusA compare
ABZR86_RS03205 +0.6 1.8 ROK family transcriptional regulator compare
ABZR86_RS09485 +0.6 0.9 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS17180 +0.6 3.6 glycosyltransferase compare
ABZR86_RS04495 +0.6 0.8 hypothetical protein compare
ABZR86_RS00720 +0.5 4.4 phosphate regulon transcriptional regulator PhoB compare
ABZR86_RS07115 +0.5 2.9 CYTH domain-containing protein compare
ABZR86_RS09615 +0.5 1.8 uracil phosphoribosyltransferase compare
ABZR86_RS07340 +0.5 0.5 tRNA-Leu compare
ABZR86_RS00345 +0.5 1.3 antibiotic biosynthesis monooxygenase compare
ABZR86_RS10255 +0.5 1.0 hypothetical protein compare
ABZR86_RS10125 +0.5 3.6 sialidase family protein compare
ABZR86_RS18430 +0.5 2.5 type II toxin-antitoxin system HigA family antitoxin compare
ABZR86_RS16880 +0.5 4.0 shikimate 5-dehydrogenase compare
ABZR86_RS06460 +0.5 2.6 tetratricopeptide repeat protein compare
ABZR86_RS10955 +0.5 4.3 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABZR86_RS14660 +0.5 2.2 membrane protein compare
ABZR86_RS10050 +0.5 3.5 A24 family peptidase compare
ABZR86_RS10030 +0.5 3.8 glycosyltransferase family 2 protein compare
ABZR86_RS14665 +0.5 1.8 transcriptional regulator FtrA compare
ABZR86_RS17365 +0.5 4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
ABZR86_RS09975 +0.5 2.5 glycosyltransferase family 4 protein compare
ABZR86_RS00840 +0.5 1.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
ABZR86_RS21420 +0.5 3.5 alpha/beta fold hydrolase compare
ABZR86_RS18480 +0.5 4.7 homogentisate 1,2-dioxygenase compare
ABZR86_RS06740 +0.5 1.6 YerC/YecD family TrpR-related protein compare


Specific Phenotypes

For 34 genes in this experiment

For stress Sodium Chlorite in Dyella japonica UNC79MFTsu3.2

For stress Sodium Chlorite across organisms