Experiment set3IT057 for Dyella japonica UNC79MFTsu3.2

LB with Sodium Chlorite 0.32 mM

Group: stress
Media: LB + Sodium Chlorite (0.32 mM)
Culturing: Dyella79_ML3, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.7 generations
By: Adam on 17-May-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1771 C3

Specific Phenotypes

For 34 genes in this experiment

For stress Sodium Chlorite in Dyella japonica UNC79MFTsu3.2

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem	#Specific
Terminal cytochrome d ubiquinol oxidases	2
Terminal cytochrome oxidases	2
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
Carboxysome	1
Conserved gene cluster associated with Met-tRNA formyltransferase	1
Cyanate hydrolysis	1
Heat shock dnaK gene cluster extended	1
Iron acquisition in Vibrio	1
Purine conversions	1
Queuosine-Archaeosine Biosynthesis	1
Soluble cytochromes and functionally related electron carriers	1
Twin-arginine translocation system	1
YcfH	1
ZZ gjo need homes	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Biosynthesis of steroids
• Purine metabolism
• gamma-Hexachlorocyclohexane degradation
• Glutathione metabolism
• Nucleotide sugars metabolism
• Lipopolysaccharide biosynthesis
• Toluene and xylene degradation
• Naphthalene and anthracene degradation
• Carotenoid biosynthesis - General
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
chlorinated phenols degradation	4	4	4
phenol degradation I (aerobic)	1	1	1
adenosine nucleotides degradation III	1	1	1
CO2 fixation into oxaloacetate (anaplerotic)	2	2	1
pyruvate to cytochrome bd oxidase electron transfer	2	2	1
NADH to cytochrome bd oxidase electron transfer I	2	2	1
succinate to cytochrome bd oxidase electron transfer	2	2	1
NADH to cytochrome bd oxidase electron transfer II	2	1	1
CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis	3	3	1
cyanate degradation	3	2	1
queuosine biosynthesis I (de novo)	4	4	1
dTDP-4-O-demethyl-β-L-noviose biosynthesis	5	4	1
queuosine biosynthesis III (queuosine salvage)	5	3	1
CDP-6-deoxy-D-gulose biosynthesis	5	3	1
C4 photosynthetic carbon assimilation cycle, NADP-ME type	7	4	1
superpathway of CDP-glucose-derived O-antigen building blocks biosynthesis	8	3	1
C4 photosynthetic carbon assimilation cycle, NAD-ME type	11	7	1
3-hydroxypropanoate cycle	13	8	1
glyoxylate assimilation	13	6	1
C4 photosynthetic carbon assimilation cycle, PEPCK type	14	8	1
3-hydroxypropanoate/4-hydroxybutanate cycle	18	11	1
superpathway of the 3-hydroxypropanoate cycle	18	8	1
gluconeogenesis II (Methanobacterium thermoautotrophicum)	18	8	1
superpathway of novobiocin biosynthesis	19	4	1
Methanobacterium thermoautotrophicum biosynthetic metabolism	56	20	1