Experiment set3IT057 for Caulobacter crescentus NA1000

Compare to:

PYE with Dimethyl Sulfoxide 7.5 vol%

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03281 +4.2 36.1 AsnC-family transcriptional regulator compare
CCNA_01712 +4.0 37.3 CopY/TcrY family transcriptional repressor compare
CCNA_00699 +4.0 21.4 LSU ribosomal protein L28P compare
CCNA_02030 +3.8 13.4 hypothetical protein compare
CCNA_03064 +3.8 24.5 PadR-family transcriptional regulator compare
CCNA_03043 +3.8 11.8 type IV pilin protein pilA compare
CCNA_02957 +3.7 13.7 ArsR-family transcriptional regulator compare
CCNA_03030 +3.7 24.0 cytochrome c2 compare
CCNA_02000 +3.6 9.6 SSU ribosomal protein S2P compare
CCNA_03252 +3.6 21.4 CopY/TcrY-family transcriptional regulator compare
CCNA_02026 +3.6 21.9 hypothetical protein compare
CCNA_03287 +3.5 23.8 PadR-family transcriptional regulator compare
CCNA_01061 +3.5 13.4 type I secretion adaptor protein RsaE compare
CCNA_00962 +3.4 20.5 MarR-family transcriptional regulator compare
CCNA_00161 +3.4 27.7 hypothetical protein compare
CCNA_01060 +3.4 15.2 type I protein secretion ATP-binding protein RsaD compare
CCNA_00924 +3.4 23.8 MarR/EmrR family transcriptional regulator compare
CCNA_01058 +3.4 21.0 helix-turn-helix transcriptional regulator compare
CCNA_01751 +3.4 12.2 aminodeoxychorismate lyase compare
CCNA_R0037 +3.4 10.6 tRNA-Glu compare
CCNA_01242 +3.4 21.0 amino acid permease compare
CCNA_02980 +3.3 21.4 tryptophan 2,3-dioxygenase compare
CCNA_02103 +3.3 24.9 hypothetical protein compare
CCNA_01059 +3.3 27.9 S-layer protein rsaA compare
CCNA_00846 +3.3 25.9 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02328 +3.2 2.3 cell cycle regulatory protein GcrA compare
CCNA_01815 +3.2 22.4 nitrogen assimilation regulatory protein NtrC compare
CCNA_00518 +3.2 17.2 LSU ribosomal protein L25P compare
CCNA_01790 +3.2 12.5 protein translocase subunit secG compare
CCNA_01361 +3.1 7.0 PepSY superfamily protein compare
CCNA_02028 +3.1 4.4 NTF2 superfamily protein compare
CCNA_03271 +3.1 21.2 methionine gamma-lyase compare
CCNA_02025 +3.1 9.9 hypothetical protein compare
CCNA_02591 +3.1 15.0 glutaredoxin compare
CCNA_01814 +3.1 20.8 nitrogen regulation protein ntrB compare
CCNA_03280 +3.1 25.3 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_00162 +3.1 13.8 hypothetical protein compare
CCNA_02419 +3.0 9.8 TonB1 protein compare
CCNA_01739 +3.0 16.8 LSU ribosomal protein L9P compare
CCNA_03961 +3.0 14.9 hypothetical protein compare
CCNA_03989 +3.0 22.8 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03612 +3.0 19.9 HTH XRE-family transcriptional regulator compare
CCNA_01573 +3.0 14.5 ArsR-family transcriptional regulator compare
CCNA_03072 +3.0 11.0 TetR-family transcriptional regulator compare
CCNA_01526 +3.0 11.5 flagellar biosynthesis regulatory protein flaF compare
CCNA_02289 +2.9 25.8 MarR/EmrR family transcriptional regulator compare
CCNA_02315 +2.9 9.2 Cro/CI-family transcriptional regulator compare
CCNA_01684 +2.9 15.8 phenylalanine-4-hydroxylase compare
CCNA_03289 +2.9 9.3 HicB-family RNA-binding protein compare
CCNA_02910 +2.9 23.2 TonB-dependent receptor compare
CCNA_01094 +2.9 7.1 hypothetical protein compare
CCNA_03689 +2.9 19.9 alanine dehydrogenase compare
CCNA_03012 +2.9 19.4 peroxiredoxin compare
CCNA_02316 +2.9 14.6 hypothetical protein compare
CCNA_00756 +2.9 4.3 hypothetical protein compare
CCNA_01840 +2.8 23.1 MerR-family transcriptional regulator compare
CCNA_02133 +2.8 14.5 glucokinase compare
CCNA_03325 +2.8 11.5 hypothetical protein compare
CCNA_02447 +2.8 13.7 PspA/IM30 family regulatory protein compare
CCNA_01931 +2.8 17.0 TetR-family transcriptional regulator compare
CCNA_03479 +2.8 15.2 MarR-family transcriptional regulator compare
CCNA_00920 +2.8 9.9 hypothetical protein compare
CCNA_01942 +2.8 14.3 Rrf2 family protein compare
CCNA_02225 +2.8 13.7 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02448 +2.8 13.3 hypothetical protein compare
CCNA_01525 +2.8 16.4 flagellar biosynthesis repressor flbT compare
CCNA_00939 +2.7 9.5 MarR-family transcriptional regulator compare
CCNA_03519 +2.7 10.6 PadR-family transcriptional regulator compare
CCNA_01851 +2.7 21.3 quinol cytochrome oxidase polypeptide II compare
CCNA_00028 +2.7 14.1 TonB-dependent receptor compare
CCNA_03062 +2.7 14.7 cell wall hydrolase family protein compare
CCNA_03129 +2.7 14.6 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03123 +2.7 15.6 ArsR-family transcriptional regulator compare
CCNA_02617 +2.7 20.6 histidinol-phosphate aminotransferase compare
CCNA_01186 +2.7 10.7 hypothetical protein compare
CCNA_01801 +2.7 11.6 hypothetical protein compare
CCNA_02646 +2.7 6.0 cell division protein MraZ compare
CCNA_03805 +2.7 17.8 PadR-family transcriptional regulator compare
CCNA_03108 +2.6 20.3 TonB-dependent outer membrane receptor compare
CCNA_01780 +2.6 18.2 exopolyphosphatase compare
CCNA_01453 +2.6 8.6 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_03379 +2.6 4.7 Cro/CI family transcriptional regulator compare
CCNA_00505 +2.6 12.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_00032 +2.6 8.3 antitoxin protein VapB compare
CCNA_01008 +2.6 18.6 urocanate hydratase compare
CCNA_01324 +2.6 11.2 LSU ribosomal protein L30P compare
CCNA_00354 +2.6 11.8 NlpC/P60 CHAP domain amidase protein compare
CCNA_02021 +2.6 9.2 hypothetical protein compare
CCNA_02575 +2.6 6.0 hypothetical protein compare
CCNA_01964 +2.6 8.9 NADH dehydrogenase compare
CCNA_02339 +2.6 14.5 methyltransferase compare
CCNA_02616 +2.6 16.9 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01690 +2.6 7.1 MAPEG family membrane protein compare
CCNA_00769 +2.5 11.2 TetR family transcriptional regulator compare
CCNA_01583 +2.5 5.9 phosphate-binding protein compare
CCNA_03609 +2.5 11.6 outer membrane protein compare
CCNA_03643 +2.5 3.9 succinate dehydrogenase membrane anchor subunit compare
CCNA_02416 +2.5 14.9 DNA-binding protein HU compare
CCNA_01181 +2.5 11.9 hypothetical protein compare
CCNA_01913 +2.5 16.6 MarR-family transcriptional regulator compare
CCNA_01959 +2.5 5.4 3-dehydroquinate dehydratase compare
CCNA_03498 +2.5 18.0 MarR-family transcriptional regulator compare
CCNA_02732 +2.5 3.7 hypothetical protein compare
CCNA_01968 +2.4 5.4 pentapeptide repeats containing protein compare
CCNA_03951 +2.4 8.7 hypothetical protein compare
CCNA_01848 +2.4 15.5 quinol cytochrome oxidase polypeptide IV compare
CCNA_01722 +2.4 4.9 hypothetical protein compare
CCNA_01393 +2.4 15.9 soluble lytic murein transglycosylase compare
CCNA_03215 +2.4 14.9 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01742 +2.4 10.4 hypothetical protein compare
CCNA_01802 +2.4 4.9 hypothetical protein compare
CCNA_03513 +2.4 10.2 cytochrome c oxidase subunit III coxC compare
CCNA_03863 +2.4 6.4 hypothetical protein compare
CCNA_00944 +2.4 12.1 flagellar hook length determination protein compare
CCNA_00264 +2.4 15.0 C4-dicarboxylate transport protein compare
CCNA_01678 +2.4 12.2 arginine N-succinyltransferase, beta chain compare
CCNA_01804 +2.4 13.0 glutathione peroxidase compare
CCNA_00834 +2.4 9.6 flagellin FljM compare
CCNA_02619 +2.3 15.5 stomatin/prohibitin-related protein compare
CCNA_02242 +2.3 15.0 PHB granule-associated protein, phasin2 compare
CCNA_02081 +2.3 9.9 Sec-independent protein translocase protein tatB compare
CCNA_01655 +2.3 12.5 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01235 +2.3 10.3 AcrR-family transcriptional regulator compare
CCNA_03089 +2.3 12.3 hypothetical protein compare
CCNA_00296 +2.3 12.0 phosphate regulon response regulator PhoB compare
CCNA_01763 +2.3 13.0 multifunctional aminopeptidase compare
CCNA_02287 +2.3 11.9 TetR-family transcriptional regulator compare
CCNA_01063 +2.3 10.5 UDP-perosamine 4-acetyl transferase compare
CCNA_03518 +2.3 17.1 cytochrome c oxidase polypeptide II coxB compare
CCNA_03936 +2.2 10.2 hypothetical protein compare
CCNA_03938 +2.2 6.9 hypothetical protein compare
CCNA_00459 +2.2 13.9 Na+/H+ antiporter nhaA compare
CCNA_00441 +2.2 11.7 chemotaxis receiver domain protein cheYI compare
CCNA_01593 +2.2 13.0 Xaa-pro aminopeptidase compare
CCNA_02071 +2.2 3.1 protein translocase subunit YajC compare
CCNA_02073 +2.2 6.3 cupin domain transcriptional regulator compare
CCNA_00447 +2.2 12.9 chemotaxis protein cheD compare
CCNA_01619 +2.2 13.0 NYN domain protein compare
CCNA_00998 +2.2 10.0 ROS/MUCR transcriptional regulator compare
CCNA_00031 +2.2 11.7 toxin protein VapC compare
CCNA_01528 +2.2 12.5 flagellin fljK compare
CCNA_00726 +2.2 16.4 acyl-CoA dehydrogenase compare
CCNA_01849 +2.2 14.1 quinol cytochrome oxidase polypeptide III compare
CCNA_00497 +2.2 13.3 putative rhamnosyl transferase compare
CCNA_03372 +2.2 6.7 bacterioferritin-associated ferredoxin compare
CCNA_02576 +2.2 14.4 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_00954 +2.2 15.4 AAA-family response regulator flbD compare
CCNA_00947 +2.2 16.2 flagellar hook protein FlgE compare
CCNA_02663 +2.2 4.5 DnaK suppressor protein DksA compare
CCNA_03420 +2.2 9.1 hypothetical protein compare
CCNA_01624 +2.1 5.0 orotate phosphoribosyltransferase compare
CCNA_00400 +2.1 10.2 MarR/EmrR-family transcriptional regulator compare
CCNA_00803 +2.1 8.3 chemotaxis protein cheW compare
CCNA_00027 +2.1 4.7 2OG-Fe(II) oxygenase compare
CCNA_03464 +2.1 7.6 glycine cleavage system H protein compare
CCNA_01603 +2.1 10.2 aspartate aminotransferase compare
CCNA_00781 +2.1 14.2 two-component receiver protein CpdR compare
CCNA_00375 +2.1 7.6 hypothetical protein compare
CCNA_02341 +2.1 8.5 small heat shock protein compare
CCNA_02127 +2.1 12.6 oxacillin resistance-associated protein fmtC compare
CCNA_01020 +2.1 10.5 LacI-family transcriptional regulator compare
CCNA_00163 +2.1 12.6 exopolysaccharide transport family protein compare
CCNA_00684 +2.1 10.2 anti-sigma factor, ChrR-family compare
CCNA_01679 +2.1 11.1 succinylglutamic semialdehyde dehydrogenase compare
CCNA_00675 +2.1 9.7 VapC-like PIN domain ribonuclease compare
CCNA_00440 +2.1 5.6 STAS domain protein compare
CCNA_R0048 +2.1 2.2 tRNA-Leu compare
CCNA_01541 +2.0 12.8 LysR-family transcriptional regulator compare
CCNA_02379 +2.0 10.5 hypothetical protein compare
CCNA_01553 +2.0 8.8 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_03688 +2.0 10.8 AsnC-family transcriptional regulator compare
CCNA_00945 +2.0 10.7 chemotaxis protein MotD compare
CCNA_03371 +2.0 9.1 bacterioferritin compare
CCNA_02942 +2.0 4.7 nucleoside-diphosphate-sugar epimerase compare
CCNA_00210 +2.0 15.6 TonB-dependent receptor compare
CCNA_02475 +2.0 14.4 transcriptional regulator vanR compare
CCNA_00448 +2.0 11.9 cheU protein compare
CCNA_01850 +2.0 15.4 quinol cytochrome oxidase polypeptide I compare
CCNA_01011 +2.0 10.6 imidazolonepropionase compare
CCNA_02171 +2.0 13.3 nucleoside permease nupC compare
CCNA_02042 +2.0 12.5 trigger factor chaperone compare
CCNA_02156 +2.0 12.6 hypothetical protein compare
CCNA_00705 +2.0 5.7 hypothetical protein compare
CCNA_00919 +2.0 6.6 hypothetical protein compare
CCNA_01691 +2.0 8.6 tRNA/rRNA methyltransferase compare
CCNA_02367 +2.0 13.9 CelR-family transcriptional regulator compare
CCNA_01199 +2.0 12.1 glucose-1-phosphate thymidylyltransferase compare
CCNA_03515 +2.0 7.5 hypothetical protein compare
CCNA_00895 +2.0 8.6 hypothetical protein compare
CCNA_02063 +2.0 9.7 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02728 +2.0 9.8 hypothetical protein compare
CCNA_03391 +2.0 9.9 Cro/CI family transcriptional regulator compare
CCNA_01062 +2.0 12.9 GDP-mannose 4,6 dehydratase compare
CCNA_00676 +2.0 4.5 PSK-family transcription factor compare
CCNA_00168 +2.0 14.1 polysaccharide export protein compare
CCNA_02467 +2.0 11.5 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03622 +2.0 10.9 beta-lactamase repressor compare
CCNA_02805 +1.9 8.1 hypothetical protein compare
CCNA_01681 +1.9 6.4 RimI-like acetyltransferase compare
CCNA_02067 +1.9 9.8 conserved membrane spanning protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Dimethyl Sulfoxide in Caulobacter crescentus NA1000

For stress Dimethyl Sulfoxide across organisms