Experiment set3IT056 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Sodium nitrite 10 mM

200 most important genes:

  gene name fitness t score description  
AO353_15465 -3.1 -7.1 cytochrome C oxidase compare
AO353_14595 -2.7 -10.5 carbonate dehydratase compare
AO353_15460 -2.6 -8.6 cytochrome o ubiquinol oxidase subunit III compare
AO353_15455 -2.6 -14.8 cytochrome o ubiquinol oxidase subunit I compare
AO353_15470 -2.6 -13.8 protoheme IX farnesyltransferase compare
AO353_22685 -2.4 -3.8 peroxidase compare
AO353_15450 -2.3 -12.5 ubiquinol oxidase subunit II compare
AO353_04190 -2.2 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_14940 -2.2 -4.6 malate:quinone oxidoreductase compare
AO353_16530 -2.2 -2.1 ribonuclease HII compare
AO353_03795 -2.1 -4.8 fumarate hydratase compare
AO353_00460 -2.1 -3.4 TetR family transcriptional regulator compare
AO353_21625 -2.1 -3.0 Fe/S biogenesis protein NfuA compare
AO353_15170 -2.0 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_07355 -2.0 -6.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_12115 -1.9 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_07325 -1.9 -2.8 diadenosine tetraphosphatase compare
AO353_06320 -1.8 -5.0 AsnC family transcriptional regulator compare
AO353_09315 -1.8 -8.6 LysR family transcriptional regulator compare
AO353_02000 -1.8 -4.0 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_04355 -1.7 -2.7 homoserine dehydrogenase compare
AO353_05625 -1.7 -2.3 transcription elongation factor GreA compare
AO353_27650 -1.7 -4.3 cell division protein FtsK compare
AO353_06720 -1.7 -2.7 NrdR family transcriptional regulator compare
AO353_06040 -1.7 -3.6 exodeoxyribonuclease V subunit alpha compare
AO353_11165 -1.7 -8.7 hypothetical protein compare
AO353_14150 -1.7 -2.2 peptidylprolyl isomerase compare
AO353_08115 -1.6 -5.3 energy transducer TonB compare
AO353_09250 -1.6 -3.4 exodeoxyribonuclease III compare
AO353_05690 -1.6 -3.7 SsrA-binding protein compare
AO353_10985 -1.6 -3.8 hypothetical protein compare
AO353_00825 -1.6 -3.5 porin compare
AO353_03580 -1.6 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_03420 -1.6 -4.7 phosphogluconate dehydratase compare
AO353_07075 -1.6 -4.8 elongation factor Tu compare
AO353_11730 -1.5 -8.1 glutamate--cysteine ligase compare
AO353_09890 -1.5 -5.1 phosphate ABC transporter ATP-binding protein compare
AO353_06850 -1.5 -4.4 MFS transporter compare
AO353_06050 -1.5 -5.9 exodeoxyribonuclease V subunit gamma compare
AO353_14775 -1.5 -5.2 hypothetical protein compare
AO353_14740 -1.5 -3.4 GTP-binding protein compare
AO353_16805 -1.5 -5.1 recombinase RecA compare
AO353_13225 -1.5 -3.2 50S ribosomal protein L9 compare
AO353_15900 -1.5 -2.7 GTP-binding protein compare
AO353_12500 -1.5 -2.1 shikimate kinase compare
AO353_23620 -1.4 -2.6 hypothetical protein compare
AO353_20175 -1.4 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_15185 -1.4 -4.6 ATPase compare
AO353_03710 -1.4 -2.9 formyltetrahydrofolate deformylase compare
AO353_13140 -1.4 -5.1 tRNA dimethylallyltransferase compare
AO353_14400 -1.4 -3.8 Fis family transcriptional regulator compare
AO353_02940 -1.3 -3.3 DNA-binding protein compare
AO353_12930 -1.3 -3.4 GlcNAc-PI de-N-acetylase compare
AO353_06045 -1.3 -5.9 exodeoxyribonuclease V subunit beta compare
AO353_09240 -1.3 -3.1 acetylglutamate kinase compare
AO353_13160 -1.3 -2.5 membrane protease HflC compare
AO353_21905 -1.3 -3.1 hypothetical protein compare
AO353_20565 -1.3 -2.0 tRNA-Ala compare
AO353_09040 -1.3 -1.9 diaminopimelate epimerase compare
AO353_24130 -1.3 -2.4 hypothetical protein compare
AO353_10945 -1.3 -2.7 cytochrome C compare
AO353_19360 -1.2 -1.8 peroxiredoxin compare
AO353_25845 -1.2 -2.5 GNAT family acetyltransferase compare
AO353_18540 -1.2 -2.4 pseudouridine synthase compare
AO353_11770 -1.2 -2.0 molecular chaperone Hsp33 compare
AO353_12105 -1.2 -4.3 peptidase S41 compare
AO353_14485 -1.2 -1.5 pseudouridine synthase compare
AO353_07155 -1.2 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_27435 -1.1 -2.0 hypothetical protein compare
AO353_03360 -1.1 -5.4 glucose-6-phosphate dehydrogenase compare
AO353_00455 -1.1 -2.0 beta-hexosaminidase compare
AO353_03615 -1.1 -2.3 cold-shock protein compare
AO353_03585 -1.1 -2.6 ATP-dependent DNA helicase RuvA compare
AO353_00115 -1.1 -1.8 hypothetical protein compare
AO353_02995 -1.1 -5.3 succinylglutamate desuccinylase compare
AO353_05110 -1.1 -6.5 histidinol dehydrogenase compare
AO353_15555 -1.1 -3.7 fumarylacetoacetase compare
AO353_03000 -1.1 -2.6 topoisomerase II compare
AO353_27720 -1.1 -3.3 cupin compare
AO353_03590 -1.1 -2.7 crossover junction endodeoxyribonuclease RuvC compare
AO353_13200 -1.0 -6.7 exoribonuclease R compare
AO353_18715 -1.0 -1.7 histidine kinase compare
AO353_10455 -1.0 -1.7 tRNA modification GTPase MnmE compare
AO353_12460 -1.0 -5.4 malate dehydrogenase compare
AO353_15905 -1.0 -4.6 outer membrane protein assembly factor BamB compare
AO353_20980 -1.0 -2.8 hypothetical protein compare
AO353_20170 -1.0 -3.5 trigger factor compare
AO353_06495 -1.0 -2.8 gamma-glutamyl phosphate reductase compare
AO353_12420 -1.0 -2.7 predicted FeS cluster maintenance protein (from data) compare
AO353_01410 -1.0 -2.2 ribonuclease E compare
AO353_20510 -1.0 -2.0 amidase compare
AO353_02005 -1.0 -1.3 hypothetical protein compare
AO353_04520 -1.0 -3.5 elongation factor 4 compare
AO353_14395 -1.0 -2.7 poly(A) polymerase compare
AO353_03130 -1.0 -2.2 hypothetical protein compare
AO353_16820 -1.0 -2.5 hypothetical protein compare
AO353_23730 -1.0 -2.3 hypothetical protein compare
AO353_05135 -1.0 -5.4 toluene tolerance protein compare
AO353_16940 -1.0 -3.6 deoxycytidine triphosphate deaminase compare
AO353_02520 -1.0 -1.4 sodium transporter compare
AO353_00810 -1.0 -2.6 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_02030 -1.0 -2.4 hypothetical protein compare
AO353_10930 -1.0 -4.8 DNA polymerase I compare
AO353_07315 -0.9 -1.7 rRNA methyltransferase compare
AO353_29215 -0.9 -1.9 alpha/beta hydrolase compare
AO353_19530 -0.9 -1.1 quinohemoprotein amine dehydrogenase compare
AO353_23495 -0.9 -2.1 SAM-dependent methyltransferase compare
AO353_01990 -0.9 -4.2 UDP-N-acetylglucosamine 2-epimerase compare
AO353_19145 -0.9 -2.5 protease HtpX compare
AO353_05230 -0.9 -4.6 ribonuclease G compare
AO353_10440 -0.9 -3.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_00355 -0.9 -2.0 transcriptional regulator compare
AO353_05125 -0.9 -3.3 BolA family transcriptional regulator compare
AO353_08685 -0.9 -4.7 N-acetylglutamate synthase compare
AO353_08015 -0.9 -3.8 5,10-methylenetetrahydrofolate reductase compare
AO353_08165 -0.9 -2.2 pyrroline-5-carboxylate reductase compare
AO353_01975 -0.9 -4.1 glycosyl transferase compare
AO353_10435 -0.9 -5.2 chromosome partitioning protein compare
AO353_00610 -0.9 -1.6 cytochrome C oxidase Cbb3 compare
AO353_12880 -0.8 -1.9 ADP-heptose--LPS heptosyltransferase compare
AO353_03520 -0.8 -2.2 hypothetical protein compare
AO353_10950 -0.8 -5.6 thiol:disulfide interchange protein compare
AO353_26070 -0.8 -2.0 hypothetical protein compare
AO353_13155 -0.8 -2.3 hypothetical protein compare
AO353_09000 -0.8 -3.3 argininosuccinate lyase compare
AO353_04220 -0.8 -3.1 chemotaxis protein CheY compare
AO353_06725 -0.8 -1.7 hypothetical protein compare
AO353_26440 -0.8 -2.5 hypothetical protein compare
AO353_14495 -0.8 -5.3 acetolactate synthase 3 catalytic subunit compare
AO353_08620 -0.8 -1.8 hypothetical protein compare
AO353_05880 -0.8 -1.8 plasmid stabilization protein compare
AO353_10320 -0.8 -1.6 hypothetical protein compare
AO353_25320 -0.8 -2.0 phosphoribosyl-dephospho-CoA transferase compare
AO353_13100 -0.8 -1.2 GTPase RsgA compare
AO353_02250 -0.8 -1.7 chorismate synthase compare
AO353_01595 -0.8 -1.2 Flp pilus assembly protein CpaB compare
AO353_08980 -0.8 -1.9 heme biosynthesis operon protein HemX compare
AO353_22920 -0.8 -2.8 GntR family transcriptional regulator compare
AO353_05420 -0.8 -1.4 peptide chain release factor 3 compare
AO353_03100 -0.8 -1.5 XRE family transcriptional regulator compare
AO353_03010 -0.8 -3.7 succinylglutamate-semialdehyde dehydrogenase compare
AO353_14435 -0.8 -2.8 Rieske (2Fe-2S) protein compare
AO353_27695 -0.7 -4.1 isocitrate dehydrogenase compare
AO353_12395 -0.7 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO353_00330 -0.7 -4.1 hypothetical protein compare
AO353_09560 -0.7 -1.3 type VI secretion protein compare
AO353_19070 -0.7 -1.5 hypothetical protein compare
AO353_17100 -0.7 -1.8 hypothetical protein compare
AO353_17475 -0.7 -2.9 hypothetical protein compare
AO353_28815 -0.7 -1.7 hypothetical protein compare
AO353_00495 -0.7 -1.4 DNA topoisomerase I compare
AO353_04240 -0.7 -1.5 chemotaxis protein CheW compare
AO353_14420 -0.7 -2.0 molecular chaperone DnaK compare
AO353_26090 -0.7 -1.4 hypothetical protein compare
AO353_26180 -0.7 -1.8 phage tail protein compare
AO353_20200 -0.7 -2.0 peptidylprolyl isomerase compare
AO353_22810 -0.7 -0.9 hypothetical protein compare
AO353_18780 -0.7 -3.6 cobyrinic acid a,c-diamide synthase compare
AO353_05060 -0.7 -2.2 pressure-regulated protein compare
AO353_02810 -0.7 -3.8 histidine kinase compare
AO353_19435 -0.7 -1.9 TetR family transcriptional regulator compare
AO353_05550 -0.7 -3.4 pseudouridine synthase compare
AO353_23235 -0.7 -2.9 NADP oxidoreductase compare
AO353_27500 -0.7 -1.3 hypothetical protein compare
AO353_15660 -0.7 -2.5 hypothetical protein compare
AO353_00750 -0.7 -2.3 GntR family transcriptional regulator compare
AO353_09720 -0.7 -1.2 hypothetical protein compare
AO353_09340 -0.7 -2.2 hypothetical protein compare
AO353_14990 -0.7 -1.4 hypothetical protein compare
AO353_08110 -0.7 -3.3 glutathione synthetase compare
AO353_21300 -0.7 -2.8 glycolate oxidase iron-sulfur subunit compare
AO353_19295 -0.7 -1.0 hypothetical protein compare
AO353_00605 -0.7 -3.4 cytochrome C oxidase Cbb3 compare
AO353_09905 -0.7 -4.1 phosphate-binding protein compare
AO353_24350 -0.7 -2.9 osmotically inducible protein C compare
AO353_19280 -0.7 -1.4 hypothetical protein compare
AO353_21600 -0.7 -3.7 hypothetical protein compare
AO353_12075 -0.7 -3.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_22150 -0.7 -1.2 iron transporter compare
AO353_00630 -0.7 -3.0 (Fe-S)-binding protein compare
AO353_10500 -0.7 -2.2 acetylornithine aminotransferase compare
AO353_09135 -0.7 -1.5 cytochrome C compare
AO353_20645 -0.7 -2.7 aspartate-semialdehyde dehydrogenase compare
AO353_21640 -0.7 -1.4 cobalt transporter compare
AO353_04565 -0.7 -2.8 nucleoid-associated protein compare
AO353_21880 -0.7 -3.2 LuxR family transcriptional regulator compare
AO353_15830 -0.7 -1.6 transcriptional regulator compare
AO353_12935 -0.7 -2.2 glycosyltransferase compare
AO353_17675 -0.7 -2.5 hypothetical protein compare
AO353_13685 -0.7 -2.3 3-dehydroquinate dehydratase compare
AO353_27000 -0.6 -0.9 hypothetical protein compare
AO353_19810 -0.6 -1.9 filamentous hemagglutinin compare
AO353_09235 -0.6 -3.1 phosphoglucomutase compare
AO353_00665 -0.6 -1.7 adenine phosphoribosyltransferase compare
AO353_21735 -0.6 -2.5 IclR family transcriptional regulator compare
AO353_14115 -0.6 -2.9 gamma-glutamyl kinase compare
AO353_28990 -0.6 -3.3 LOG family protein compare
AO353_22660 -0.6 -2.8 hypothetical protein compare
AO353_08880 -0.6 -1.5 exopolyphosphatase compare
AO353_28425 -0.6 -1.8 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress Sodium nitrite across organisms