Experiment set3IT056 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -5.3 -9.3 glycine synthesis protein GlyXL (from data) compare
MMP_RS05280 -5.1 -14.9 COG1361 S-layer family protein compare
MMP_RS05285 -5.1 -17.3 MMPL family transporter compare
MMP_RS05500 -4.5 -17.4 2-isopropylmalate synthase compare
MMP_RS03450 -4.5 -7.6 glycine synthesis protein GlyXS (from data) compare
MMP_RS01175 -4.1 -8.8 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS07845 -3.9 -6.4 LL-diaminopimelate aminotransferase compare
MMP_RS06680 -3.8 -23.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -3.7 -20.0 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS01020 -3.6 -2.9 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06720 -3.5 -16.3 response regulator transcription factor compare
MMP_RS03315 -3.5 -3.0 ferrous iron transport protein A compare
MMP_RS06715 -3.5 -24.4 cache domain-containing protein compare
MMP_RS03035 -3.4 -7.7 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS01500 -3.4 -7.5 CBS domain-containing protein compare
MMP_RS07605 -3.3 -6.4 diadenylate cyclase compare
MMP_RS06700 -3.3 -24.2 hypothetical protein compare
MMP_RS06345 -3.3 -15.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01455 -3.1 -13.6 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS00300 -3.1 -2.3 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03015 -2.9 -13.1 GTP 3' 8-cyclase MoaA compare
MMP_RS05265 -2.8 -4.0 2-isopropylmalate synthase compare
MMP_RS06730 -2.8 -4.7 phosphopantothenate/pantothenate synthetase compare
MMP_RS06270 -2.7 -8.2 TIGR00300 family protein compare
MMP_RS05515 -2.7 -12.2 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06705 -2.7 -10.5 formate/nitrite transporter family protein compare
MMP_RS04615 -2.6 -9.5 PDGLE domain-containing protein compare
MMP_RS04215 -2.6 -7.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06350 -2.6 -11.4 HesA/MoeB/ThiF family protein compare
MMP_RS01700 -2.6 -2.9 dihydroxy-acid dehydratase compare
MMP_RS03640 -2.6 -7.8 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07635 -2.5 -9.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06975 -2.5 -3.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06375 -2.5 -7.6 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS07730 -2.5 -4.0 pyruvate synthase subunit beta compare
MMP_RS05930 -2.5 -5.4 3-isopropylmalate dehydratase large subunit compare
MMP_RS01005 -2.4 -4.0 riboflavin synthase compare
MMP_RS03435 -2.4 -5.7 ketol-acid reductoisomerase compare
MMP_RS04605 -2.3 -8.5 cobalt ECF transporter T component CbiQ compare
MMP_RS06295 -2.3 -12.5 methanogenesis marker 14 protein compare
MMP_RS02010 -2.2 -12.9 PHP domain-containing protein compare
MMP_RS04620 -2.2 -14.5 cobalt transporter CbiM compare
MMP_RS09020 -2.2 -3.2 hypothetical protein compare
MMP_RS05290 -2.2 -6.6 TetR/AcrR family transcriptional regulator compare
MMP_RS06625 -2.2 -4.8 DNA primase compare
MMP_RS06340 -2.1 -12.8 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06355 -2.1 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS02340 -2.1 -3.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00295 -2.1 -5.5 gamma carbonic anhydrase family protein compare
MMP_RS08715 -2.1 -3.7 formylmethanofuran dehydrogenase subunit B compare
MMP_RS01265 -2.1 -5.3 hypothetical protein compare
MMP_RS07365 -2.1 -13.2 2-phosphoglycerate kinase compare
MMP_RS08745 -2.0 -9.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS06175 -2.0 -12.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS01755 -2.0 -3.0 DUF2097 domain-containing protein compare
MMP_RS05080 -2.0 -13.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05095 -2.0 -12.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS00685 -2.0 -7.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS05085 -1.9 -10.0 AAA family ATPase compare
MMP_RS05070 -1.9 -12.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS01325 -1.9 -4.9 dihydroneopterin aldolase family protein compare
MMP_RS01985 -1.8 -10.3 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS07545 -1.8 -1.9 HTH domain-containing protein compare
MMP_RS05075 -1.8 -15.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05540 -1.8 -4.7 hypothetical protein compare
MMP_RS05100 -1.8 -14.4 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07185 -1.8 -12.6 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS01225 -1.8 -6.3 DUF5379 domain-containing protein compare
MMP_RS03025 -1.8 -5.8 molybdenum cofactor guanylyltransferase compare
MMP_RS07555 -1.8 -1.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS05090 -1.8 -11.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS03600 -1.8 -4.2 triose-phosphate isomerase compare
MMP_RS07380 -1.8 -3.9 transcription elongation factor Spt5 compare
MMP_RS07445 -1.7 -7.0 helix-turn-helix domain-containing protein compare
MMP_RS08100 -1.7 -10.3 8-amino-7-oxononanoate synthase compare
MMP_RS04500 -1.7 -13.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05925 -1.6 -7.4 small nuclear ribonucleoprotein compare
MMP_RS07735 -1.6 -1.7 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS05065 -1.6 -9.6 CooT family nickel-binding protein compare
MMP_RS03960 -1.6 -2.5 hypothetical protein compare
MMP_RS04585 -1.6 -9.0 AIR synthase related protein compare
MMP_RS01610 -1.5 -5.5 hypothetical protein compare
MMP_RS02345 -1.5 -5.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS06230 -1.5 -3.8 helix-turn-helix domain-containing protein compare
MMP_RS05060 -1.5 -11.3 AAA family ATPase compare
MMP_RS05425 -1.5 -5.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS02240 -1.5 -5.4 methanogenesis marker 7 protein compare
MMP_RS03445 -1.5 -2.5 methanogenesis marker 17 protein compare
MMP_RS07645 -1.5 -6.6 aldehyde dehydrogenase family protein compare
MMP_RS06315 -1.5 -1.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS06120 -1.5 -5.4 UPF0147 family protein compare
MMP_RS05055 -1.5 -11.7 DUF166 domain-containing protein compare
MMP_RS06630 -1.5 -2.9 UPF0058 family protein compare
MMP_RS08635 -1.5 -3.9 UbiA family prenyltransferase compare
MMP_RS01830 -1.4 -2.5 tRNA-Val compare
MMP_RS06370 -1.4 -7.2 biotin synthase BioB compare
MMP_RS02195 -1.4 -5.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS06020 -1.4 -6.5 archaeoflavoprotein AfpA compare
MMP_RS03700 -1.4 -8.6 sodium:proton antiporter compare
MMP_RS08105 -1.4 -7.5 6-carboxyhexanoate--CoA ligase compare
MMP_RS07005 -1.4 -1.5 4Fe-4S binding protein compare
MMP_RS06285 -1.4 -3.8 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS08095 -1.3 -6.8 dethiobiotin synthase compare
MMP_RS01220 -1.3 -7.3 hypothetical protein compare
MMP_RS06930 -1.3 -9.3 MBL fold metallo-hydrolase compare
MMP_RS08645 -1.3 -8.3 UPF0179 family protein compare
MMP_RS00290 -1.3 -6.5 hypothetical protein compare
MMP_RS08790 -1.3 -3.8 translation initiation factor IF-2 subunit alpha compare
MMP_RS04710 -1.3 -2.5 hypothetical protein compare
MMP_RS05920 -1.3 -1.4 50S ribosomal protein L37e compare
MMP_RS02800 -1.3 -5.7 nucleotidyltransferase domain-containing protein compare
MMP_RS00060 -1.2 -2.0 3-dehydroquinate synthase II compare
MMP_RS08460 -1.2 -4.2 proteasome-activating nucleotidase compare
MMP_RS00720 -1.2 -7.3 metal-dependent hydrolase compare
MMP_RS04780 -1.2 -2.6 ribonuclease P compare
MMP_RS01385 -1.2 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS06105 -1.2 -6.8 hydrogenase maturation peptidase HycI compare
MMP_RS04685 -1.2 -5.0 DUF126 domain-containing protein compare
MMP_RS07710 -1.2 -8.3 cell division protein FtsZ compare
MMP_RS04890 -1.2 -1.7 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS02900 -1.2 -1.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS04955 -1.2 -4.5 DNA topoisomerase I compare
MMP_RS03475 -1.2 -1.3 hypothetical protein compare
MMP_RS03145 -1.2 -7.2 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS08300 -1.1 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS07580 -1.1 -2.6 DUF356 domain-containing protein compare
MMP_RS01800 -1.1 -4.7 TIGR00303 family protein compare
MMP_RS01795 -1.1 -2.5 methanogenesis marker 6 protein compare
MMP_RS08240 -1.1 -6.8 methanogenesis marker 16 metalloprotein compare
MMP_RS07630 -1.1 -1.6 ATP-binding cassette domain-containing protein compare
MMP_RS08820 -1.1 -5.7 hypothetical protein compare
MMP_RS06400 -1.0 -2.8 4Fe-4S binding protein compare
MMP_RS06130 -1.0 -5.6 peptidylprolyl isomerase compare
MMP_RS05555 -1.0 -2.5 DUF4040 domain-containing protein compare
MMP_RS02165 -1.0 -6.3 tRNA-dihydrouridine synthase compare
MMP_RS04790 -1.0 -7.3 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS00750 -1.0 -2.6 fumarate hydratase compare
MMP_RS08330 -1.0 -4.7 NADH-quinone oxidoreductase subunit H compare
MMP_RS01960 -1.0 -0.8 hypothetical protein compare
MMP_RS03140 -1.0 -8.1 hypothetical protein compare
MMP_RS04870 -1.0 -3.3 TIGR02253 family HAD-type hydrolase compare
MMP_RS02190 -1.0 -2.9 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS01380 -1.0 -3.2 PHP domain-containing protein compare
MMP_RS06865 -1.0 -1.5 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS00695 -1.0 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS02280 -1.0 -1.4 DUF211 domain-containing protein compare
MMP_RS00320 -1.0 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS00305 -1.0 -1.6 phosphoribosyl-ATP diphosphatase compare
MMP_RS08720 -1.0 -1.9 4Fe-4S binding protein compare
MMP_RS06925 -1.0 -2.1 ribonuclease VapC4 compare
MMP_RS06895 -1.0 -2.9 selenocysteine-specific translation elongation factor compare
MMP_RS03400 -1.0 -4.2 archease compare
MMP_RS03580 -0.9 -4.4 signal recognition particle-docking protein FtsY compare
MMP_RS07390 -0.9 -4.0 cell division protein FtsZ compare
MMP_RS07195 -0.9 -6.5 M20 family metallo-hydrolase compare
MMP_RS05345 -0.9 -5.1 hypothetical protein compare
MMP_RS02875 -0.9 -6.9 chorismate pyruvate-lyase family protein compare
MMP_RS07575 -0.9 -3.4 RNA ligase partner protein compare
MMP_RS01180 -0.9 -1.4 XTP/dITP diphosphatase compare
MMP_RS02135 -0.9 -3.7 DUF5612 domain-containing protein compare
MMP_RS05250 -0.9 -2.7 NFYB/HAP3 family transcription factor subunit compare
MMP_RS05430 -0.9 -4.4 TIGR00288 family NYN domain-containing protein compare
MMP_RS05550 -0.9 -1.1 cation:proton antiporter compare
MMP_RS03095 -0.9 -6.7 diphthine synthase compare
MMP_RS00515 -0.9 -1.5 DUF655 domain-containing protein compare
MMP_RS07410 -0.9 -6.6 4-demethylwyosine synthase TYW1 compare
MMP_RS06980 -0.8 -4.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07385 -0.8 -2.0 protein translocase SEC61 complex subunit gamma compare
MMP_RS02930 -0.8 -3.7 class I SAM-dependent methyltransferase compare
MMP_RS00455 -0.8 -6.2 orotate phosphoribosyltransferase-like protein compare
MMP_RS00520 -0.8 -1.9 RNA polymerase Rpb4 family protein compare
MMP_RS07525 -0.8 -5.1 4Fe-4S binding protein compare
MMP_RS05505 -0.8 -6.2 class IV adenylate cyclase compare
MMP_RS03250 -0.8 -3.6 MJ1244 family protein compare
MMP_RS07350 -0.8 -1.7 preprotein translocase subunit Sec61beta compare
MMP_RS07200 -0.8 -5.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08435 -0.8 -2.1 Era-like GTP-binding protein compare
MMP_RS03110 -0.8 -4.8 glycosyltransferase family 2 protein compare
MMP_RS07705 -0.8 -5.7 transcriptional regulator compare
MMP_RS06885 -0.7 -3.5 50S ribosome-binding GTPase compare
MMP_RS00985 -0.7 -3.8 CDC48 family AAA ATPase compare
MMP_RS07600 -0.7 -2.6 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01240 -0.7 -1.0 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS08320 -0.7 -4.9 molybdopterin molybdotransferase MoeA compare
MMP_RS08210 -0.7 -2.1 phosphatidylglycerophosphatase A compare
MMP_RS01775 -0.7 -2.3 TIGR00297 family protein compare
MMP_RS03440 -0.7 -1.6 MoaD/ThiS family protein compare
MMP_RS05850 -0.7 -4.2 Ldh family oxidoreductase compare
MMP_RS02355 -0.7 -2.8 30S ribosomal protein S27ae compare
MMP_RS07420 -0.6 -3.6 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS04775 -0.6 -2.6 adenosylhomocysteinase compare
MMP_RS01195 -0.6 -1.5 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS03305 -0.6 -4.3 winged helix-turn-helix domain-containing protein compare
MMP_RS03420 -0.6 -3.5 acetolactate synthase small subunit compare
MMP_RS00325 -0.6 -1.8 RNA-binding protein compare
MMP_RS08440 -0.6 -3.0 cell division protein SepF compare
MMP_RS03205 -0.6 -1.0 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS08165 -0.6 -1.7 phosphoglycerate dehydrogenase compare
MMP_RS05440 -0.6 -4.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS03555 -0.6 -4.7 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms