Experiment set3IT056 for Methanococcus maripaludis JJ

Compare to:

formate McAA B12 dropout

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00235 -6.1 -19.7 hypothetical protein compare
MMJJ_RS00570 -5.9 -2.6 ribonuclease P compare
MMJJ_RS00275 -5.4 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS02045 -5.3 -4.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06860 -5.1 -6.1 hypothetical protein compare
MMJJ_RS04200 -5.0 -8.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06695 -4.8 -4.2 amidohydrolase compare
MMJJ_RS05450 -4.8 -17.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS03615 -4.8 -4.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03895 -4.6 -5.2 hydrogenase expression/formation protein HypE compare
MMJJ_RS00425 -4.6 -5.1 hypothetical protein compare
MMJJ_RS06855 -4.5 -1.9 DUF2104 domain-containing protein compare
MMJJ_RS04050 -4.5 -2.7 dihydroneopterin aldolase family protein compare
MMJJ_RS03110 -4.5 -5.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS06625 -4.5 -3.0 pyruvate synthase subunit PorB compare
MMJJ_RS07665 -4.4 -24.4 formate dehydrogenase subunit alpha compare
MMJJ_RS05650 -4.4 -4.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS02090 -4.4 -7.7 tyramine--L-glutamate ligase compare
MMJJ_RS06490 -4.3 -4.0 methanogenesis marker 2 protein compare
MMJJ_RS07670 -4.3 -19.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS03840 -4.3 -4.1 DHH family phosphoesterase compare
MMJJ_RS03580 -4.2 -5.0 TIGR00303 family protein compare
MMJJ_RS01810 -4.2 -2.7 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05070 -4.2 -3.2 DNA primase catalytic subunit PriS compare
MMJJ_RS05065 -4.1 -5.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01935 -4.0 -6.1 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05225 -3.9 -1.3 Gar1/Naf1 family protein compare
MMJJ_RS01755 -3.9 -2.6 ferrous iron transport protein B compare
MMJJ_RS07655 -3.9 -14.4 hypothetical protein compare
MMJJ_RS01475 -3.9 -2.8 signal recognition particle-docking protein FtsY compare
MMJJ_RS05445 -3.8 -3.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06040 -3.8 -5.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08330 -3.8 -4.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08850 -3.8 -3.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS07660 -3.8 -11.5 carbonic anhydrase compare
MMJJ_RS08020 -3.7 -9.3 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03200 -3.7 -2.8 uroporphyrinogen-III synthase compare
MMJJ_RS08320 -3.7 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00210 -3.7 -3.3 DUF530 family protein compare
MMJJ_RS03065 -3.6 -14.0 CBS domain-containing protein compare
MMJJ_RS04685 -3.6 -12.0 carbamoyltransferase HypF compare
MMJJ_RS05575 -3.6 -5.8 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08625 -3.6 -8.8 magnesium/cobalt transporter CorA compare
MMJJ_RS03760 -3.6 -4.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06875 -3.5 -3.6 hypothetical protein compare
MMJJ_RS02200 -3.5 -13.4 chorismate pyruvate-lyase family protein compare
MMJJ_RS05535 -3.5 -15.8 hypothetical protein compare
MMJJ_RS06725 -3.5 -13.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS07410 -3.5 -5.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03875 -3.5 -5.2 CBS domain-containing protein compare
MMJJ_RS04995 -3.5 -7.9 Tfx family DNA-binding protein compare
MMJJ_RS06240 -3.4 -4.3 dihydropteroate synthase-like protein compare
MMJJ_RS01565 -3.4 -10.3 TIGR00267 family protein compare
MMJJ_RS00560 -3.4 -4.6 homoisocitrate dehydrogenase compare
MMJJ_RS04800 -3.4 -8.0 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS04485 -3.4 -9.2 riboflavin synthase compare
MMJJ_RS01880 -3.4 -4.2 RlmE family RNA methyltransferase compare
MMJJ_RS05490 -3.4 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS07635 -3.3 -15.9 response regulator transcription factor compare
MMJJ_RS03865 -3.3 -2.0 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05260 -3.3 -7.9 ATP-grasp domain-containing protein compare
MMJJ_RS05930 -3.3 -3.0 cell division protein SepF compare
MMJJ_RS08155 -3.3 -5.7 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00215 -3.3 -3.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08005 -3.3 -17.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07720 -3.2 -2.9 UPF0058 family protein compare
MMJJ_RS08250 -3.2 -6.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS04155 -3.2 -8.0 hypothetical protein compare
MMJJ_RS05950 -3.2 -4.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS04730 -3.2 -3.8 tyrosine decarboxylase MfnA compare
MMJJ_RS06250 -3.2 -3.2 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS00580 -3.2 -2.7 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS05620 -3.2 -6.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS01600 -3.2 -2.9 radical SAM protein compare
MMJJ_RS01750 -3.2 -3.1 ferrous iron transport protein A compare
MMJJ_RS03800 -3.1 -10.2 aldolase compare
MMJJ_RS04615 -3.1 -5.2 methanogenesis marker 3 protein compare
MMJJ_RS03620 -3.1 -5.9 DUF2097 domain-containing protein compare
MMJJ_RS06915 -3.1 -11.8 helix-turn-helix domain-containing protein compare
MMJJ_RS02920 -3.1 -3.0 30S ribosomal protein S27ae compare
MMJJ_RS02935 -3.1 -4.1 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05655 -3.1 -9.4 HisA/HisF family protein compare
MMJJ_RS08000 -3.1 -8.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS06375 -3.1 -5.5 UbiX family flavin prenyltransferase compare
MMJJ_RS04520 -3.0 -6.3 coenzyme F430 synthase compare
MMJJ_RS06110 -3.0 -3.0 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS05190 -3.0 -8.8 gamma carbonic anhydrase family protein compare
MMJJ_RS06930 -3.0 -3.8 type II methionyl aminopeptidase compare
MMJJ_RS02275 -3.0 -4.5 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06510 -3.0 -3.7 LL-diaminopimelate aminotransferase compare
MMJJ_RS07000 -3.0 -2.2 TrkH family potassium uptake protein compare
MMJJ_RS03295 -2.9 -15.8 PHP domain-containing protein compare
MMJJ_RS07350 -2.9 -4.1 4Fe-4S binding protein compare
MMJJ_RS00450 -2.9 -2.0 DUF126 domain-containing protein compare
MMJJ_RS06255 -2.9 -9.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS03820 -2.9 -4.3 hydrogenase formation protein HypD compare
MMJJ_RS08080 -2.9 -10.1 TIGR00300 family protein compare
MMJJ_RS01865 -2.9 -7.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS07470 -2.9 -2.6 50S ribosome-binding GTPase compare
MMJJ_RS06220 -2.8 -7.5 polyamine aminopropyltransferase compare
MMJJ_RS07640 -2.8 -20.3 cache domain-containing protein compare
MMJJ_RS03830 -2.8 -11.1 CBS domain-containing protein compare
MMJJ_RS06180 -2.8 -3.7 tryptophan--tRNA ligase compare
MMJJ_RS03150 -2.8 -8.2 2-phospho-L-lactate transferase compare
MMJJ_RS06805 -2.8 -3.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS03230 -2.8 -4.9 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06185 -2.7 -6.0 cobalamin biosynthesis protein compare
MMJJ_RS01815 -2.7 -5.3 DUF134 domain-containing protein compare
MMJJ_RS00195 -2.7 -4.1 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS07650 -2.7 -18.7 formate/nitrite transporter family protein compare
MMJJ_RS06910 -2.7 -2.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06050 -2.7 -10.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS03005 -2.7 -5.2 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04790 -2.7 -5.3 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05995 -2.7 -2.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS06840 -2.7 -4.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04675 -2.6 -5.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS08795 -2.6 -3.2 phosphoglucosamine mutase compare
MMJJ_RS08340 -2.6 -4.7 archaeoflavoprotein AfpA compare
MMJJ_RS03225 -2.6 -3.4 4Fe-4S binding protein compare
MMJJ_RS00265 -2.6 -7.8 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS05590 -2.6 -2.3 homoserine dehydrogenase compare
MMJJ_RS00600 -2.6 -3.4 hydroxymethylbilane synthase compare
MMJJ_RS03670 -2.6 -4.7 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS07380 -2.6 -10.8 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS08585 -2.5 -8.8 M42 family metallopeptidase compare
MMJJ_RS08480 -2.5 -9.3 hydroxyethylthiazole kinase compare
MMJJ_RS01820 -2.5 -5.3 MJ1244 family protein compare
MMJJ_RS01690 -2.5 -3.4 methanogenesis marker 12 protein compare
MMJJ_RS06785 -2.5 -7.6 RNA ligase partner protein compare
MMJJ_RS03965 -2.5 -2.2 DNA-directed RNA polymerase subunit L compare
MMJJ_RS01870 -2.5 -2.5 methanogenesis marker 15 protein compare
MMJJ_RS00125 -2.5 -2.7 KEOPS complex subunit Cgi121 compare
MMJJ_RS08055 -2.4 -6.8 methanogenesis marker 14 protein compare
MMJJ_RS08095 -2.4 -5.0 cobyric acid synthase CobQ compare
MMJJ_RS03270 -2.4 -2.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS08430 -2.4 -7.5 small nuclear ribonucleoprotein compare
MMJJ_RS01345 -2.4 -4.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS04655 -2.4 -7.2 FAD-dependent oxidoreductase compare
MMJJ_RS03630 -2.4 -10.7 AMP phosphorylase compare
MMJJ_RS07945 -2.4 -2.4 4Fe-4S binding protein compare
MMJJ_RS06155 -2.4 -4.6 phosphatidylglycerophosphatase A compare
MMJJ_RS06010 -2.4 -6.3 hypothetical protein compare
MMJJ_RS03095 -2.3 -2.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08855 -2.3 -5.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS09190 -2.3 -2.3 tryptophan synthase subunit beta compare
MMJJ_RS06750 -2.3 -2.3 homoaconitase large subunit compare
MMJJ_RS01360 -2.3 -3.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04985 -2.3 -4.7 glutamyl-tRNA reductase compare
MMJJ_RS07345 -2.3 -6.3 homocysteine biosynthesis protein compare
MMJJ_RS08840 -2.3 -4.0 calcium/sodium antiporter compare
MMJJ_RS05155 -2.3 -5.8 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS05295 -2.3 -9.8 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03845 -2.3 -3.6 translation initiation factor IF-2 compare
MMJJ_RS06865 -2.2 -3.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04670 -2.2 -5.2 DUF2117 domain-containing protein compare
MMJJ_RS02040 -2.2 -2.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03055 -2.2 -3.4 hypothetical protein compare
MMJJ_RS00205 -2.2 -5.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00550 -2.2 -9.4 AIR synthase-related protein compare
MMJJ_RS00355 -2.2 -3.5 ribonuclease P protein component 4 compare
MMJJ_RS08660 -2.1 -3.3 acetylornithine transaminase compare
MMJJ_RS01200 -2.1 -3.3 PRC-barrel domain-containing protein compare
MMJJ_RS03125 -2.1 -3.2 GMC oxidoreductase compare
MMJJ_RS05810 -2.1 -5.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05330 -2.1 -2.5 DNA polymerase II large subunit compare
MMJJ_RS07995 -2.1 -6.1 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS03115 -2.1 -5.3 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS08065 -2.1 -2.9 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06170 -2.1 -8.2 hypothetical protein compare
MMJJ_RS06835 -2.1 -8.8 4Fe-4S binding protein compare
MMJJ_RS05935 -2.1 -2.7 Era-like GTP-binding protein compare
MMJJ_RS04010 -2.1 -7.5 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS07155 -2.1 -8.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07275 -2.0 -3.2 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05380 -2.0 -1.4 hypothetical protein compare
MMJJ_RS02190 -2.0 -11.1 molybdopterin biosynthesis protein compare
MMJJ_RS03060 -2.0 -2.4 methanogenesis marker 7 protein compare
MMJJ_RS07245 -2.0 -4.3 amidohydrolase family protein compare
MMJJ_RS06700 -2.0 -3.7 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07355 -2.0 -5.3 MoaD/ThiS family protein compare
MMJJ_RS06940 -2.0 -9.5 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS04980 -2.0 -4.2 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS08620 -2.0 -3.6 DUF373 family protein compare
MMJJ_RS00270 -2.0 -2.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07950 -1.9 -2.8 4Fe-4S binding protein compare
MMJJ_RS05610 -1.9 -3.7 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS01355 -1.9 -2.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS05540 -1.9 -12.5 LysR family transcriptional regulator compare
MMJJ_RS08170 -1.9 -2.4 diaminopimelate decarboxylase compare
MMJJ_RS07725 -1.9 -5.4 DNA primase DnaG compare
MMJJ_RS03140 -1.9 -9.7 tRNA-dihydrouridine synthase compare
MMJJ_RS04650 -1.9 -6.6 nitrogenase iron protein compare
MMJJ_RS04475 -1.9 -3.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04565 -1.9 -2.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS03765 -1.8 -5.9 hypothetical protein compare
MMJJ_RS06270 -1.8 -6.7 dethiobiotin synthase compare
MMJJ_RS08500 -1.8 -6.6 L-sulfolactate dehydrogenase compare
MMJJ_RS07980 -1.8 -9.5 biotin synthase BioB compare
MMJJ_RS03710 -1.8 -6.5 DUF2111 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments