Experiment set3IT056 for Methanococcus maripaludis JJ

Compare to:

formate McAA B12 dropout

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.2 7.9 hypothetical protein compare
MMJJ_RS03725 +1.7 6.6 sulfurtransferase TusA family protein compare
MMJJ_RS07585 +0.9 5.3 DHH family phosphoesterase compare
MMJJ_RS04005 +0.9 6.4 acetate--CoA ligase family protein compare
MMJJ_RS08830 +0.9 3.0 hypothetical protein compare
MMJJ_RS07225 +0.8 5.1 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS06540 +0.8 2.3 DUF2120 domain-containing protein compare
MMJJ_RS07235 +0.7 6.0 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS03605 +0.7 2.7 TIGR00297 family protein compare
MMJJ_RS07185 +0.7 3.1 DUF371 domain-containing protein compare
MMJJ_RS03835 +0.7 2.8 DUF504 domain-containing protein compare
MMJJ_RS06210 +0.7 3.4 hypothetical protein compare
MMJJ_RS06275 +0.7 2.5 hypothetical protein compare
MMJJ_RS07025 +0.6 3.7 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS06800 +0.6 3.7 prefoldin subunit alpha compare
MMJJ_RS08935 +0.6 0.6 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS06165 +0.6 4.0 archaeosine synthase subunit alpha compare
MMJJ_RS05685 +0.6 3.6 class III signal peptide-containing protein compare
MMJJ_RS08485 +0.6 2.6 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS09405 +0.6 1.6 hypothetical protein compare
MMJJ_RS03250 +0.6 1.1 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS07920 +0.6 3.6 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS07220 +0.5 4.0 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS01825 +0.5 2.4 DNA repair and recombination protein RadB compare
MMJJ_RS06470 +0.5 3.4 tripartite tricarboxylate transporter permease compare
MMJJ_RS07175 +0.5 3.9 DEAD/DEAH box helicase compare
MMJJ_RS07210 +0.5 3.7 AmmeMemoRadiSam system protein B compare
MMJJ_RS09360 +0.5 3.0 hypothetical protein compare
MMJJ_RS03515 +0.5 3.3 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS01855 +0.5 3.3 MBL fold metallo-hydrolase compare
MMJJ_RS07765 +0.5 1.7 DMT family protein compare
MMJJ_RS07260 +0.5 2.8 PspC domain-containing protein compare
MMJJ_RS05040 +0.5 3.2 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS06770 +0.5 3.3 hypothetical protein compare
MMJJ_RS06535 +0.5 3.7 UPF0104 family protein compare
MMJJ_RS01035 +0.4 2.1 hypothetical protein compare
MMJJ_RS08490 +0.4 1.9 rubrerythrin family protein compare
MMJJ_RS06190 +0.4 3.1 7-cyano-7-deazaguanine synthase compare
MMJJ_RS06460 +0.4 2.6 cytochrome c compare
MMJJ_RS09205 +0.4 2.0 hypothetical protein compare
MMJJ_RS06735 +0.4 3.0 cobalt ECF transporter T component CbiQ compare
MMJJ_RS05975 +0.4 2.7 sulfurtransferase TusA family protein compare
MMJJ_RS06680 +0.4 2.1 DUF366 family protein compare
MMJJ_RS07230 +0.4 2.4 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS08225 +0.4 1.6 peptidylprolyl isomerase compare
MMJJ_RS07985 +0.4 2.1 hypothetical protein compare
MMJJ_RS04350 +0.4 2.0 hypothetical protein compare
MMJJ_RS06500 +0.4 2.5 class I SAM-dependent methyltransferase compare
MMJJ_RS04215 +0.4 3.1 DMT family transporter compare
MMJJ_RS06810 +0.4 2.8 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS02180 +0.4 1.7 DHH family phosphoesterase compare
MMJJ_RS07795 +0.4 2.1 cupin domain-containing protein compare
MMJJ_RS05915 +0.4 1.4 multiprotein bridging factor aMBF1 compare
MMJJ_RS04965 +0.4 1.0 RNA polymerase Rpb4 family protein compare
MMJJ_RS06710 +0.4 2.9 TldD/PmbA family protein compare
MMJJ_RS07445 +0.4 2.4 RlmF-related methyltransferase compare
MMJJ_RS06205 +0.4 2.3 EamA family transporter compare
MMJJ_RS08305 +0.4 1.8 peroxiredoxin compare
MMJJ_RS06745 +0.4 1.9 energy-coupling factor ABC transporter permease compare
MMJJ_RS06440 +0.4 2.3 DUF4870 domain-containing protein compare
MMJJ_RS09390 +0.4 0.9 hypothetical protein compare
MMJJ_RS03575 +0.4 1.8 NUDIX hydrolase compare
MMJJ_RS06120 +0.4 2.3 DUF4013 domain-containing protein compare
MMJJ_RS07450 +0.4 1.6 hypothetical protein compare
MMJJ_RS04955 +0.4 2.4 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS07205 +0.3 1.8 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS01670 +0.3 1.3 hypothetical protein compare
MMJJ_RS09295 +0.3 0.4 hypothetical protein compare
MMJJ_RS06685 +0.3 2.8 S-layer protein compare
MMJJ_RS08720 +0.3 2.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
MMJJ_RS04135 +0.3 1.3 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS06640 +0.3 2.0 YfcE family phosphodiesterase compare
MMJJ_RS04105 +0.3 2.6 prepilin peptidase compare
MMJJ_RS06790 +0.3 2.5 nucleotidyltransferase family protein compare
MMJJ_RS07800 +0.3 2.4 AMP-binding protein compare
MMJJ_RS08100 +0.3 1.9 hypothetical protein compare
MMJJ_RS04830 +0.3 1.5 zinc dependent phospholipase C family protein compare
MMJJ_RS00440 +0.3 1.8 selenide, water dikinase SelD compare
MMJJ_RS05035 +0.3 1.4 4Fe-4S binding protein compare
MMJJ_RS07270 +0.3 1.8 ribonuclease HII compare
MMJJ_RS09065 +0.3 1.6 hypothetical protein compare
MMJJ_RS07620 +0.3 2.1 class I SAM-dependent rRNA methyltransferase compare
MMJJ_RS04270 +0.3 1.3 DUF364 domain-containing protein compare
MMJJ_RS05500 +0.3 2.6 hypothetical protein compare
MMJJ_RS07825 +0.3 1.2 YciI family protein compare
MMJJ_RS07680 +0.3 1.8 glucose-6-phosphate isomerase compare
MMJJ_RS06505 +0.3 0.9 prephenate dehydratase compare
MMJJ_RS06085 +0.3 1.0 proteasome assembly chaperone family protein compare
MMJJ_RS05885 +0.3 2.3 tungstate ABC transporter substrate-binding protein WtpA compare
MMJJ_RS00150 +0.3 1.6 DUF2180 family protein compare
MMJJ_RS06960 +0.3 2.4 CAP domain-containing protein compare
MMJJ_RS02185 +0.3 1.6 TIGR00296 family protein compare
MMJJ_RS02965 +0.3 1.3 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMJJ_RS05510 +0.3 1.9 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS06520 +0.3 1.9 TldD/PmbA family protein compare
MMJJ_RS04815 +0.3 1.1 TIM barrel protein compare
MMJJ_RS06480 +0.3 1.7 hypothetical protein compare
MMJJ_RS08130 +0.3 0.2 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS05580 +0.3 1.6 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS04580 +0.3 2.0 2-phosphosulfolactate phosphatase compare
MMJJ_RS00585 +0.3 2.1 S-layer protein compare
MMJJ_RS01010 +0.3 2.5 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS03850 +0.3 1.2 nucleoside-diphosphate kinase compare
MMJJ_RS05660 +0.3 1.5 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS03175 +0.3 1.6 zinc metalloprotease HtpX compare
MMJJ_RS05750 +0.3 1.8 flagellar accessory protein FlaH compare
MMJJ_RS05495 +0.3 1.8 MinD/ParA family protein compare
MMJJ_RS06515 +0.3 1.9 ribonuclease III compare
MMJJ_RS03595 +0.3 1.4 hypothetical protein compare
MMJJ_RS04825 +0.3 2.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MMJJ_RS05960 +0.3 1.5 DUF169 domain-containing protein compare
MMJJ_RS05200 +0.3 2.0 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS04500 +0.3 1.5 hypothetical protein compare
MMJJ_RS01515 +0.3 1.0 DUF2178 domain-containing protein compare
MMJJ_RS07480 +0.3 1.9 FAD-dependent oxidoreductase compare
MMJJ_RS03610 +0.3 1.4 HIT family protein compare
MMJJ_RS05605 +0.3 0.9 hypothetical protein compare
MMJJ_RS06450 +0.3 1.8 DUF3343 domain-containing protein compare
MMJJ_RS07820 +0.2 1.8 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS03905 +0.2 1.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS06100 +0.2 1.5 rubrerythrin compare
MMJJ_RS00635 +0.2 1.6 ABC transporter permease subunit compare
MMJJ_RS04545 +0.2 0.7 PadR family transcriptional regulator compare
MMJJ_RS08525 +0.2 0.9 peptidylprolyl isomerase compare
MMJJ_RS05740 +0.2 1.9 archaellar assembly protein FlaJ compare
MMJJ_RS07255 +0.2 2.1 hypothetical protein compare
MMJJ_RS07590 +0.2 1.6 flap endonuclease-1 compare
MMJJ_RS06455 +0.2 1.6 YeeE/YedE family protein compare
MMJJ_RS01140 +0.2 1.2 helix-turn-helix domain-containing protein compare
MMJJ_RS03410 +0.2 0.8 hypothetical protein compare
MMJJ_RS08735 +0.2 1.9 hypothetical protein compare
MMJJ_RS06675 +0.2 1.6 TIGR01212 family radical SAM protein compare
MMJJ_RS03375 +0.2 1.1 hypothetical protein compare
MMJJ_RS00845 +0.2 1.4 hypothetical protein compare
MMJJ_RS04245 +0.2 1.2 flavoprotein compare
MMJJ_RS01930 +0.2 1.0 Pre-mRNA processing ribonucleoprotein compare
MMJJ_RS07610 +0.2 1.2 DUF2119 domain-containing protein compare
MMJJ_RS07240 +0.2 1.9 MBL fold metallo-hydrolase compare
MMJJ_RS08285 +0.2 1.6 class I SAM-dependent methyltransferase compare
MMJJ_RS07200 +0.2 1.6 MFS transporter compare
MMJJ_RS06430 +0.2 1.1 haloacid dehalogenase compare
MMJJ_RS05690 +0.2 2.0 hypothetical protein compare
MMJJ_RS05940 +0.2 1.5 HAD family hydrolase compare
MMJJ_RS02230 +0.2 1.7 hypothetical protein compare
MMJJ_RS06135 +0.2 1.5 50S ribosomal protein L11 methyltransferase compare
MMJJ_RS05925 +0.2 1.2 DUF2099 family protein compare
MMJJ_RS05525 +0.2 1.1 GTP-binding protein compare
MMJJ_RS03525 +0.2 1.3 2-hydroxyacyl-CoA dehydratase family protein compare
MMJJ_RS06950 +0.2 1.3 4-demethylwyosine synthase TYW1 compare
MMJJ_RS05795 +0.2 1.7 hypothetical protein compare
MMJJ_RS04850 +0.2 1.2 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS00155 +0.2 1.6 DUF2193 domain-containing protein compare
MMJJ_RS00420 +0.2 1.1 CBS domain-containing protein compare
MMJJ_RS04585 +0.2 1.2 phenylacetate--CoA ligase compare
MMJJ_RS07810 +0.2 1.1 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS03330 +0.2 1.2 hypothetical protein compare
MMJJ_RS04640 +0.2 1.5 TIGR01177 family methyltransferase compare
MMJJ_RS02340 +0.2 1.1 SAM-dependent methyltransferase compare
MMJJ_RS03015 +0.2 1.4 Ig-like domain-containing protein compare
MMJJ_RS01970 +0.2 0.8 hypothetical protein compare
MMJJ_RS05965 +0.2 1.5 MFS transporter compare
MMJJ_RS03510 +0.2 1.1 acyl-CoA dehydratase activase compare
MMJJ_RS06340 +0.2 0.4 coenzyme-B sulfoethylthiotransferase subunit alpha compare
MMJJ_RS03045 +0.2 1.2 hypothetical protein compare
MMJJ_RS08310 +0.2 1.0 ZIP family metal transporter compare
MMJJ_RS07890 +0.2 1.1 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS06765 +0.2 1.4 hypothetical protein compare
MMJJ_RS09325 +0.2 0.9 hypothetical protein compare
MMJJ_RS05405 +0.2 1.3 DNA cytosine methyltransferase compare
MMJJ_RS06585 +0.2 1.1 alanine racemase compare
MMJJ_RS02310 +0.2 1.1 ABC transporter ATP-binding protein compare
MMJJ_RS06080 +0.2 1.2 serine/threonine protein kinase compare
MMJJ_RS07685 +0.2 1.5 glycogen/starch synthase compare
MMJJ_RS01265 +0.2 0.9 cupin domain-containing protein compare
MMJJ_RS04345 +0.2 0.8 DUF2080 family transposase-associated protein compare
MMJJ_RS01395 +0.2 1.1 DUF1894 domain-containing protein compare
MMJJ_RS00745 +0.2 0.9 hypothetical protein compare
MMJJ_RS07815 +0.2 1.2 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS07740 +0.2 1.1 DUF2334 domain-containing protein compare
MMJJ_RS05585 +0.2 1.2 hypothetical protein compare
MMJJ_RS04410 +0.2 0.6 hypothetical protein compare
MMJJ_RS09120 +0.2 0.2 aspartate kinase compare
MMJJ_RS05890 +0.2 1.3 molybdate ABC transporter substrate-binding protein compare
MMJJ_RS05400 +0.2 0.6 CoA-binding protein compare
MMJJ_RS08125 +0.2 1.1 DNA double-strand break repair nuclease NurA compare
MMJJ_RS04575 +0.2 0.9 DUF116 domain-containing protein compare
MMJJ_RS08455 +0.2 0.7 tetratricopeptide repeat protein compare
MMJJ_RS07215 +0.2 1.3 TIGR00341 family protein compare
MMJJ_RS03450 +0.2 0.8 hypothetical protein compare
MMJJ_RS05335 +0.2 0.7 heavy metal-binding domain-containing protein compare
MMJJ_RS07015 +0.2 0.2 PFL family protein compare
MMJJ_RS06090 +0.2 0.8 hypothetical protein compare
MMJJ_RS05715 +0.2 1.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS03685 +0.2 1.3 indolepyruvate ferredoxin oxidoreductase subunit alpha compare
MMJJ_RS06385 +0.2 0.7 hypothetical protein compare
MMJJ_RS05005 +0.2 1.1 hypothetical protein compare
MMJJ_RS01630 +0.2 1.1 hypothetical protein compare
MMJJ_RS03775 +0.2 0.4 50S ribosomal protein L15e compare
MMJJ_RS04920 +0.2 1.1 CBS domain-containing protein compare
MMJJ_RS01055 +0.2 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments