Experiment set3IT056 for Bifidobacterium breve UCC2003

Compare to:

Recovery broth with Amoxicillin 0.002 mM

200 most detrimental genes:

  gene name fitness t score description  
BBR_RS14400 +1.4 12.5 acetyltransferase compare
BBR_RS12620 +1.4 11.1 glycosyltransferase family 1 protein compare
BBR_RS12550 +1.1 10.5 sugar transferase compare
BBR_RS11500 +0.9 8.3 glycosyltransferase family 2 protein compare
BBR_RS14160 +0.8 3.0 peptidylprolyl isomerase compare
BBR_RS16670 +0.8 4.6 hypothetical protein compare
BBR_RS14850 +0.8 2.7 VOC family protein compare
BBR_RS18695 +0.7 5.0 PRD domain-containing protein compare
BBR_RS19055 +0.6 1.5 ferredoxin family protein compare
BBR_RS18645 +0.6 4.4 DNA-binding response regulator compare
BBR_RS14080 +0.6 1.9 hypothetical protein compare
BBR_RS11205 +0.6 3.6 HPr family phosphocarrier protein compare
BBR_RS14870 +0.6 1.8 histidine phosphatase family protein compare
BBR_RS15795 +0.6 2.8 phosphoribosyl-ATP diphosphatase compare
BBR_RS17905 +0.6 5.5 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS17680 +0.6 2.0 hypothetical protein compare
BBR_RS14945 +0.6 3.3 peptidase E compare
BBR_RS10725 +0.5 5.3 Lead, cadmium, zinc and mercury transporting ATPase compare
BBR_RS14575 +0.5 2.2 YraN family protein compare
BBR_RS13945 +0.5 2.0 Txe/YoeB family addiction module toxin compare
BBR_RS12995 +0.5 3.5 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS14220 +0.5 3.7 phosphomannomutase compare
BBR_RS12375 +0.5 0.7 pantetheine-phosphate adenylyltransferase compare
BBR_RS12600 +0.5 2.8 serine acetyltransferase compare
BBR_RS14485 +0.5 3.3 DUF3000 domain-containing protein compare
BBR_RS14365 +0.5 3.2 hypothetical protein compare
BBR_RS14985 +0.5 1.0 ATP-dependent DNA helicase PcrA compare
BBR_RS14765 +0.5 0.7 hypothetical protein compare
BBR_RS15460 +0.4 1.9 hypothetical protein compare
BBR_RS15850 +0.4 1.8 ASCH domain-containing protein compare
BBR_RS14495 +0.4 1.4 trigger factor compare
BBR_RS17475 +0.4 2.3 cold-shock protein compare
BBR_RS15845 +0.4 0.4 hypothetical protein compare
BBR_RS21155 +0.4 2.4 hypothetical protein compare
BBR_RS13515 +0.4 2.8 putative sulfate exporter family transporter compare
BBR_RS12310 +0.4 0.6 signal recognition particle protein compare
BBR_RS20770 +0.4 1.9 30S ribosomal protein S14 compare
BBR_RS12880 +0.4 2.6 Crp/Fnr family transcriptional regulator compare
BBR_RS18700 +0.4 3.1 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS11210 +0.4 3.3 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS14635 +0.4 2.2 amino acid ABC transporter ATP-binding protein compare
BBR_RS19440 +0.4 3.3 polysaccharide deacetylase family protein compare
BBR_RS16285 +0.4 1.9 magnesium transporter CorA family protein compare
BBR_RS19370 +0.4 1.6 type I polyketide synthase compare
BBR_RS10640 +0.4 3.2 alpha/beta hydrolase compare
BBR_RS19115 +0.4 1.3 hypothetical protein compare
BBR_RS13125 +0.3 0.6 ABC transporter permease compare
BBR_RS16090 +0.3 1.8 phosphoribosyl-AMP cyclohydrolase compare
BBR_RS18755 +0.3 0.7 30S ribosome-binding factor RbfA compare
BBR_RS20955 +0.3 0.5 hypothetical protein compare
BBR_RS17660 +0.3 1.6 hypothetical protein compare
BBR_RS19905 +0.3 0.5 methionine--tRNA ligase compare
BBR_RS15860 +0.3 0.4 DUF2316 domain-containing protein compare
BBR_RS15875 +0.3 2.0 DNA-binding protein compare
BBR_RS17075 +0.3 2.2 dihydrodipicolinate synthase family protein compare
BBR_RS17005 +0.3 2.1 methyltransferase domain-containing protein compare
BBR_RS16795 +0.3 1.0 Cys-tRNA(Pro) deacylase compare
BBR_RS18620 +0.3 2.3 DUF4125 domain-containing protein compare
BBR_RS12720 +0.3 0.7 hypothetical protein compare
BBR_RS10980 +0.3 2.7 TetR/AcrR family transcriptional regulator compare
BBR_RS15100 +0.3 2.6 murein L,D-transpeptidase compare
BBR_RS14300 +0.3 1.2 NUDIX hydrolase compare
BBR_RS12210 +0.3 2.0 hypothetical protein compare
BBR_RS10345 +0.3 2.8 DNA starvation/stationary phase protection protein compare
BBR_RS14900 +0.3 1.5 DNA-binding response regulator compare
BBR_RS20835 +0.3 1.7 hypothetical protein compare
BBR_RS21035 +0.3 1.5 AMMECR1 domain-containing protein compare
BBR_RS12815 +0.3 1.6 hypothetical protein compare
BBR_RS16385 +0.3 1.5 hypothetical protein compare
BBR_RS12645 +0.3 1.7 acyltransferase compare
BBR_RS16570 +0.3 2.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
BBR_RS13325 +0.3 1.2 hypothetical protein compare
BBR_RS15970 +0.3 1.4 hypothetical protein compare
BBR_RS12515 +0.3 2.3 LacI family transcriptional regulator compare
BBR_RS16100 +0.3 1.6 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein compare
BBR_RS16885 +0.3 2.2 carbohydrate kinase compare
BBR_RS13960 +0.3 0.8 thiamine biosynthesis protein ThiS compare
BBR_RS13890 +0.3 2.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
BBR_RS13270 +0.3 1.9 ABC transporter ATP-binding protein compare
BBR_RS15695 +0.3 1.7 membrane channel protein compare
BBR_RS17365 +0.3 1.5 ABC transporter permease compare
BBR_RS15745 +0.3 1.2 hydrolase or phosphatase compare
BBR_RS20105 +0.3 2.5 YhgE/Pip domain-containing protein compare
BBR_RS20100 +0.3 2.6 YhgE/Pip domain-containing protein compare
BBR_RS15920 +0.3 1.0 type II toxin-antitoxin system YafQ family toxin compare
BBR_RS14065 +0.3 1.3 TnpV protein compare
BBR_RS14040 +0.3 1.4 GNAT family N-acetyltransferase compare
BBR_RS14740 +0.3 1.3 YccF domain-containing protein compare
BBR_RS10750 +0.3 2.3 class II fructose-bisphosphate aldolase compare
BBR_RS17695 +0.3 1.9 type I-C CRISPR-associated endonuclease Cas1 compare
BBR_RS17415 +0.2 0.8 hypothetical protein compare
BBR_RS13525 +0.2 1.1 CrcB family protein compare
BBR_RS17015 +0.2 1.7 MFS transporter compare
BBR_RS12575 +0.2 1.5 hypothetical protein compare
BBR_RS14060 +0.2 1.6 ABC transporter compare
BBR_RS17690 +0.2 1.3 CRISPR-associated endonuclease Cas2 compare
BBR_RS16150 +0.2 1.4 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS20695 +0.2 1.1 hypothetical protein compare
BBR_RS20775 +0.2 0.6 DUF4230 domain-containing protein compare
BBR_RS16600 +0.2 1.9 aconitate hydratase AcnA compare
BBR_RS15465 +0.2 1.3 DUF2974 domain-containing protein compare
BBR_RS20875 +0.2 1.3 hypothetical protein compare
BBR_RS17975 +0.2 1.4 very short patch repair endonuclease compare
BBR_RS18035 +0.2 0.6 oligoribonuclease compare
BBR_RS16080 +0.2 0.6 DUF1287 domain-containing protein compare
BBR_RS20170 +0.2 2.1 LacI family transcriptional regulator compare
BBR_RS14930 +0.2 1.4 DNA-binding protein, also contains divergent AAA domain for ATP binding (DNA helicase) compare
BBR_RS19240 +0.2 2.0 LacI family transcriptional regulator compare
BBR_RS14505 +0.2 0.7 hypothetical protein compare
BBR_RS20325 +0.2 1.9 PTS lactose transporter subunit IIB compare
BBR_RS12725 +0.2 1.4 hypothetical protein compare
BBR_RS17070 +0.2 1.9 hypothetical protein compare
BBR_RS16555 +0.2 0.2 DNA translocase FtsK compare
BBR_RS16175 +0.2 0.9 DNA integration/recombination/inversion protein compare
BBR_RS17190 +0.2 0.8 transcriptional regulator compare
BBR_RS12770 +0.2 1.0 hypothetical protein compare
BBR_RS12580 +0.2 1.2 transposase compare
BBR_RS14535 +0.2 1.3 pyridoxal phosphate-dependent aminotransferase compare
BBR_RS14450 +0.2 1.6 methionine ABC transporter ATP-binding protein compare
BBR_RS14940 +0.2 1.4 hypothetical protein compare
BBR_RS20960 +0.2 0.8 hypothetical protein compare
BBR_RS12560 +0.2 1.4 transposase compare
BBR_RS14645 +0.2 0.9 amino acid ABC transporter permease compare
BBR_RS17030 +0.2 1.2 bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase PriA compare
BBR_RS11970 +0.2 0.3 Phage transcriptional regulator compare
BBR_RS21160 +0.2 2.0 DUF2961 domain-containing protein compare
BBR_RS16870 +0.2 1.2 ROK family protein compare
BBR_RS20660 +0.2 1.4 hypothetical protein compare
BBR_RS15470 +0.2 1.5 LysR family transcriptional regulator compare
BBR_RS14150 +0.2 1.1 hypothetical protein compare
BBR_RS20125 +0.2 1.8 SIR2 family protein compare
BBR_RS14340 +0.2 1.1 helix-turn-helix domain-containing protein compare
BBR_RS18065 +0.2 1.7 branched-chain amino acid ABC transporter permease compare
BBR_RS20545 +0.2 1.3 hypothetical protein compare
BBR_RS21140 +0.2 1.6 hypothetical protein compare
BBR_RS17580 +0.2 1.1 PTS fructose transporter subunit IIB compare
BBR_RS20010 +0.2 1.6 transposase compare
BBR_RS17085 +0.2 1.5 KR domain-containing protein compare
BBR_RS20805 +0.2 1.1 hypothetical protein compare
BBR_RS15810 +0.2 1.3 tryptophan synthase subunit alpha compare
BBR_RS18495 +0.2 1.5 ROK family protein compare
BBR_RS15015 +0.2 0.7 cytidine deaminase compare
BBR_RS13850 +0.2 0.9 ABC transporter permease compare
BBR_RS12270 +0.2 1.3 hypothetical protein compare
BBR_RS16165 +0.2 1.1 M23 family peptidase compare
BBR_RS17340 +0.2 1.4 polyphosphate kinase 2 family protein compare
BBR_RS15525 +0.2 1.1 RNase adapter RapZ compare
BBR_RS10805 +0.2 1.6 LacI family transcriptional regulator compare
BBR_RS11295 +0.2 1.4 transcriptional regulator compare
BBR_RS15290 +0.2 1.2 ABC transporter ATP-binding protein compare
BBR_RS13565 +0.2 1.4 DNA-(apurinic or apyrimidinic site) lyase endonuclease III base excision repair compare
BBR_RS14965 +0.2 0.7 DUF2975 domain-containing protein compare
BBR_RS17665 +0.2 1.5 IS21 family transposase compare
BBR_RS14120 +0.2 1.2 aldo/keto reductase compare
BBR_RS20135 +0.2 1.8 alpha-glucosidase compare
BBR_RS14595 +0.2 1.5 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
BBR_RS18005 +0.2 1.1 hypothetical protein compare
BBR_RS14460 +0.2 1.2 amidohydrolase compare
BBR_RS20130 +0.2 1.6 threonine ammonia-lyase compare
BBR_RS16620 +0.2 0.8 DUF3159 domain-containing protein compare
BBR_RS15215 +0.2 1.2 MazG-like protein compare
BBR_RS14620 +0.2 1.1 proline iminopeptidase compare
BBR_RS21010 +0.2 0.7 hypothetical protein compare
BBR_RS14225 +0.2 1.0 ComF family protein compare
BBR_RS18440 +0.2 0.9 hypothetical protein compare
BBR_RS20220 +0.2 1.5 sulfite exporter TauE/SafE family protein compare
BBR_RS17130 +0.2 1.3 WYL domain-containing protein compare
BBR_RS16445 +0.2 1.1 hypothetical protein compare
BBR_RS15975 +0.2 1.0 hypothetical protein compare
BBR_RS16900 +0.2 0.9 D-tyrosyl-tRNA(Tyr) deacylase compare
BBR_RS17670 +0.2 1.1 transposase compare
BBR_RS17165 +0.2 1.2 tRNA dihydrouridine synthase DusB compare
BBR_RS20165 +0.2 1.6 Solute-binding protein of ABC transporter system for sugars compare
BBR_RS20075 +0.2 1.4 LacI family transcriptional regulator compare
BBR_RS15355 +0.2 0.7 DUF3800 domain-containing protein compare
BBR_RS20055 +0.2 1.5 amino acid permease compare
BBR_RS11625 +0.2 1.1 transposase compare
BBR_RS13510 +0.2 1.2 LysR family transcriptional regulator compare
BBR_RS20040 +0.2 1.5 amino acid permease compare
BBR_RS16170 +0.2 0.4 hypothetical protein compare
BBR_RS12155 +0.2 1.4 sugar ABC transporter permease compare
BBR_RS13305 +0.2 0.8 transcriptional repressor compare
BBR_RS20635 +0.2 0.9 hypothetical protein compare
BBR_RS18660 +0.2 1.5 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase compare
BBR_RS16710 +0.2 0.8 hypothetical protein compare
BBR_RS15000 +0.2 1.0 ABC transporter ATP-binding protein compare
BBR_RS20140 +0.2 1.5 alpha-galactosidase compare
BBR_RS20810 +0.2 0.5 pirin compare
BBR_RS16880 +0.2 1.0 ROK family transcriptional regulator compare
BBR_RS15075 +0.2 0.8 peptidase A24 compare
BBR_RS13935 +0.2 0.8 hypothetical protein compare
BBR_RS16465 +0.2 0.9 ribokinase compare
BBR_RS14605 +0.2 1.3 ABC transporter permease compare
BBR_RS15735 +0.2 1.1 Helicase helY compare
BBR_RS21055 +0.2 0.4 hypothetical protein compare
BBR_RS14920 +0.2 1.0 ABC transporter permease compare
BBR_RS13675 +0.1 1.0 glutaredoxin-like protein compare
BBR_RS16860 +0.1 1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BBR_RS15335 +0.1 0.7 hypothetical protein compare
BBR_RS17655 +0.1 1.0 transposase compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in stress experiments

For stress Amoxicillin across organisms