Experiment set3IT056 for Burkholderia phytofirmans PsJN

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.2 -3.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS11255 -7.1 -2.6 AsnC family transcriptional regulator compare
BPHYT_RS06555 -7.1 -6.5 ketol-acid reductoisomerase compare
BPHYT_RS14915 -7.0 -6.5 phosphoserine aminotransferase compare
BPHYT_RS06545 -7.0 -4.8 acetolactate synthase compare
BPHYT_RS14845 -6.9 -3.3 cysteine synthase compare
BPHYT_RS11250 -6.8 -4.2 saccharopine dehydrogenase compare
BPHYT_RS17670 -6.7 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17885 -6.7 -6.3 3-dehydroquinate synthase compare
BPHYT_RS14895 -6.7 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15075 -6.6 -2.5 dihydrokaempferol 4-reductase compare
BPHYT_RS17690 -6.4 -10.5 imidazole glycerol phosphate synthase compare
BPHYT_RS04965 -6.3 -7.5 ATP-binding protein compare
BPHYT_RS17395 -6.3 -1.4 anthranilate synthase subunit II compare
BPHYT_RS06405 -6.2 -7.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS17890 -6.0 -2.3 shikimate kinase compare
BPHYT_RS05960 -6.0 -5.2 endoribonuclease L-PSP compare
BPHYT_RS18320 -6.0 -11.3 orotate phosphoribosyltransferase compare
BPHYT_RS33915 -6.0 -6.4 isopropylmalate isomerase compare
BPHYT_RS15915 -5.8 -9.5 ornithine carbamoyltransferase compare
BPHYT_RS04720 -5.8 -10.3 transcriptional regulator compare
BPHYT_RS08955 -5.8 -3.4 homoserine dehydrogenase compare
BPHYT_RS33900 -5.7 -11.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS09515 -5.7 -3.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06900 -5.7 -3.9 aspartate aminotransferase compare
BPHYT_RS04955 -5.6 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS17685 -5.5 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS08960 -5.5 -2.1 threonine synthase compare
BPHYT_RS17855 -5.3 -13.3 glutamate synthase compare
BPHYT_RS16735 -5.3 -6.4 phosphogluconate dehydratase compare
BPHYT_RS01590 -5.3 -4.6 methionine biosynthesis protein MetW compare
BPHYT_RS03640 -5.2 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17405 -5.1 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS08850 -5.1 -2.2 transcriptional regulator compare
BPHYT_RS14910 -5.1 -9.5 chorismate mutase compare
BPHYT_RS14550 -5.0 -1.1 tRNA-Asn compare
BPHYT_RS14190 -5.0 -10.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS30100 -5.0 -1.5 copper oxidase compare
BPHYT_RS16675 -4.9 -2.4 dihydroorotase compare
BPHYT_RS16840 -4.9 -3.2 transketolase compare
BPHYT_RS02905 -4.8 -14.7 RNA polymerase subunit sigma-54 compare
BPHYT_RS28930 -4.8 -1.0 chromosome partitioning protein ParA compare
BPHYT_RS15920 -4.7 -8.4 argininosuccinate synthase compare
BPHYT_RS08030 -4.7 -3.3 transposase compare
BPHYT_RS02860 -4.7 -1.0 membrane protein compare
BPHYT_RS16835 -4.7 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS12845 -4.6 -12.8 ATPase compare
BPHYT_RS05010 -4.6 -4.1 RpiR family transcriptional regulator compare
BPHYT_RS06610 -4.5 -2.0 triosephosphate isomerase compare
BPHYT_RS30490 -4.5 -1.0 2-haloalkanoic acid dehalogenase compare
BPHYT_RS33805 -4.5 -1.0 hypothetical protein compare
BPHYT_RS02610 -4.5 -3.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS01595 -4.5 -11.0 homoserine O-acetyltransferase compare
BPHYT_RS04740 -4.5 -6.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS33865 -4.5 -8.0 tryptophan synthase alpha chain compare
BPHYT_RS16270 -4.5 -2.9 phosphoglycerate kinase compare
BPHYT_RS17400 -4.4 -4.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS33880 -4.4 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS20880 -4.3 -0.9 polyketide cyclase compare
BPHYT_RS22145 -4.3 -1.3 phosphoesterase compare
BPHYT_RS16905 -4.3 -5.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS23230 -4.3 -1.3 histidine kinase compare
BPHYT_RS26080 -4.3 -1.3 ABC transporter ATPase compare
BPHYT_RS04745 -4.3 -4.7 sulfate adenylyltransferase compare
BPHYT_RS33875 -4.3 -5.1 tryptophan synthase subunit alpha compare
BPHYT_RS12150 -4.2 -14.2 PII uridylyl-transferase compare
BPHYT_RS12940 -4.2 -4.1 signal transduction histidine kinase compare
BPHYT_RS17390 -4.2 -8.7 anthranilate synthase subunit I compare
BPHYT_RS28535 -4.2 -0.9 response regulator receiver compare
BPHYT_RS26390 -4.1 -0.9 antibiotic resistance protein compare
BPHYT_RS19260 -4.1 -0.9 hypothetical protein compare
BPHYT_RS13705 -4.1 -3.6 chorismate synthase compare
BPHYT_RS06045 -4.1 -7.3 transaldolase compare
BPHYT_RS03725 -4.1 -1.5 serine hydroxymethyltransferase compare
BPHYT_RS03150 -4.0 -9.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS18965 -3.9 -1.2 chemotaxis protein CheY compare
BPHYT_RS02965 -3.9 -2.6 membrane protein compare
BPHYT_RS04730 -3.9 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS12935 -3.9 -4.6 chemotaxis protein CheY compare
BPHYT_RS12280 -3.8 -1.2 RNA helicase compare
BPHYT_RS02590 -3.8 -7.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13220 -3.8 -7.0 phosphomethylpyrimidine synthase compare
BPHYT_RS32650 -3.8 -8.7 aldehyde dehydrogenase conserved
BPHYT_RS33905 -3.8 -1.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS12985 -3.8 -2.3 amino acid acetyltransferase compare
BPHYT_RS33645 -3.7 -3.2 homoserine kinase compare
BPHYT_RS16245 -3.7 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17715 -3.6 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS25070 -3.6 -1.1 choline ABC transporter permease compare
BPHYT_RS04725 -3.6 -5.8 sulfite reductase compare
BPHYT_RS09500 -3.6 -4.3 glucose-6-phosphate isomerase compare
BPHYT_RS31400 -3.5 -1.1 methyl-accepting chemotaxis protein compare
BPHYT_RS33840 -3.4 -4.1 amidophosphoribosyltransferase compare
BPHYT_RS04950 -3.4 -8.4 hypothetical protein compare
BPHYT_RS15595 -3.4 -8.2 ABC transporter compare
BPHYT_RS27295 -3.4 -1.0 hypothetical protein compare
BPHYT_RS03645 -3.4 -2.0 tRNA dimethylallyltransferase compare
BPHYT_RS18340 -3.3 -2.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS17640 -3.2 -3.4 2-alkenal reductase compare
BPHYT_RS19565 -3.1 -7.2 gamma-glutamyl:cysteine ligase compare
BPHYT_RS19785 -3.0 -1.6 chemotaxis protein CheY compare
BPHYT_RS16255 -3.0 -3.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16555 -3.0 -4.2 cation transporter compare
BPHYT_RS17700 -2.9 -5.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04945 -2.9 -15.4 membrane protein compare
BPHYT_RS06685 -2.9 -3.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS08565 -2.9 -0.8 dihydroorotate dehydrogenase compare
BPHYT_RS33835 -2.9 -2.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS01585 -2.9 -6.5 major facilitator superfamily protein compare
BPHYT_RS19435 -2.7 -3.3 16S rRNA methyltransferase compare
BPHYT_RS16090 -2.7 -1.1 hypothetical protein compare
BPHYT_RS17240 -2.7 -1.3 cell division protein FtsW compare
BPHYT_RS12615 -2.7 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS08245 -2.6 -4.1 anti-sigma factor compare
BPHYT_RS33630 -2.6 -1.5 chromate transporter compare
BPHYT_RS33615 -2.6 -2.7 decarboxylase compare
BPHYT_RS12530 -2.5 -2.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS22940 -2.5 -1.3 pilus assembly protein TadE compare
BPHYT_RS15620 -2.5 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12840 -2.4 -3.0 pyruvate dehydrogenase compare
BPHYT_RS05020 -2.4 -4.8 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS00115 -2.4 -1.4 acetaldehyde dehydrogenase compare
BPHYT_RS17675 -2.4 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS05650 -2.3 -1.3 hypothetical protein compare
BPHYT_RS19570 -2.3 -7.8 sodium/hydrogen exchanger compare
BPHYT_RS19680 -2.3 -7.4 glutamate--cysteine ligase compare
BPHYT_RS04335 -2.3 -2.1 membrane protein compare
BPHYT_RS30140 -2.3 -1.1 3-methylitaconate isomerase compare
BPHYT_RS11685 -2.3 -0.9 phasin family protein compare
BPHYT_RS15590 -2.2 -4.2 amino acid ABC transporter ATPase compare
BPHYT_RS14195 -2.2 -2.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS01885 -2.2 -6.7 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS28595 -2.2 -1.3 glyoxalase compare
BPHYT_RS15605 -2.2 -5.8 ABC transporter permease compare
BPHYT_RS01240 -2.2 -1.9 hypothetical protein compare
BPHYT_RS15600 -2.2 -6.7 ABC transporter ATP-binding protein compare
BPHYT_RS26570 -2.2 -0.9 5'-nucleotidase compare
BPHYT_RS22910 -2.2 -1.0 hypothetical protein compare
BPHYT_RS04595 -2.1 -1.5 cytoplasmic protein compare
BPHYT_RS11155 -2.1 -1.1 hypothetical protein compare
BPHYT_RS00815 -2.1 -1.1 hypothetical protein compare
BPHYT_RS15615 -2.0 -3.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS22860 -2.0 -0.8 chemotaxis protein CheY compare
BPHYT_RS35230 -2.0 -1.3 type 11 methyltransferase compare
BPHYT_RS10675 -2.0 -1.7 muconate cycloisomerase compare
BPHYT_RS30145 -2.0 -4.7 aconitate hydratase compare
BPHYT_RS03535 -2.0 -3.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS14740 -2.0 -5.6 threonine-phosphate decarboxylase compare
BPHYT_RS34940 -1.9 -2.3 3-phenylpropionate dioxygenase compare
BPHYT_RS02885 -1.9 -5.9 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS33920 -1.9 -4.1 type II citrate synthase compare
BPHYT_RS23875 -1.9 -1.0 sugar ABC transporter ATP-binding protein compare
BPHYT_RS33965 -1.9 -1.6 methylcitrate synthase compare
BPHYT_RS12465 -1.9 -1.7 inositol monophosphatase compare
BPHYT_RS24350 -1.9 -1.7 hypothetical protein compare
BPHYT_RS07690 -1.9 -2.0 AraC family transcriptional regulator compare
BPHYT_RS31040 -1.9 -1.6 sugar transporter compare
BPHYT_RS17920 -1.9 -1.1 protein CyaY compare
BPHYT_RS20325 -1.9 -2.8 acyl-CoA dehydrogenase compare
BPHYT_RS31320 -1.9 -1.4 hypothetical protein compare
BPHYT_RS31590 -1.8 -1.6 hypothetical protein compare
BPHYT_RS04155 -1.8 -2.6 polysaccharide deacetylase compare
BPHYT_RS33440 -1.8 -5.0 LysR family transcriptional regulator compare
BPHYT_RS03755 -1.8 -2.3 pilus assembly protein PilE compare
BPHYT_RS10175 -1.8 -1.6 membrane protein compare
BPHYT_RS03330 -1.8 -1.8 hypothetical protein compare
BPHYT_RS11825 -1.8 -0.9 cytosine deaminase compare
BPHYT_RS13610 -1.8 -2.1 MerR family transcriptional regulator compare
BPHYT_RS07705 -1.7 -1.7 arginine succinyltransferase compare
BPHYT_RS19735 -1.7 -1.7 hypothetical protein compare
BPHYT_RS15650 -1.7 -5.4 quinolinate synthetase compare
BPHYT_RS05040 -1.7 -2.6 sugar ABC transporter ATPase compare
BPHYT_RS12265 -1.7 -1.2 alanine acetyltransferase compare
BPHYT_RS30700 -1.7 -3.3 conjugal transfer protein TraR compare
BPHYT_RS09385 -1.7 -0.7 FAD-dependent oxidoreductase compare
BPHYT_RS18280 -1.7 -5.1 TetR family transcriptional regulator compare
BPHYT_RS34505 -1.7 -1.6 hypothetical protein compare
BPHYT_RS28360 -1.7 -1.1 carboxymuconolactone decarboxylase compare
BPHYT_RS30860 -1.7 -1.5 sugar ABC transporter permease compare
BPHYT_RS07475 -1.7 -1.1 nitrate reductase compare
BPHYT_RS25065 -1.7 -0.9 glycine/betaine ABC transporter ATPase compare
BPHYT_RS17945 -1.7 -1.2 cytochrome C biogenesis protein compare
BPHYT_RS19935 -1.6 -2.7 protein serine/threonine phosphatase compare
BPHYT_RS03570 -1.6 -5.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS36275 -1.6 -2.1 hypothetical protein compare
BPHYT_RS23850 -1.6 -2.6 ser/threonine protein phosphatase compare
BPHYT_RS03455 -1.6 -1.3 paraquat-inducible protein A compare
BPHYT_RS34050 -1.6 -1.5 secretion system protein F compare
BPHYT_RS07565 -1.6 -4.1 urocanate hydratase compare
BPHYT_RS17165 -1.6 -2.3 cell division protein ZapD compare
BPHYT_RS33060 -1.6 -1.6 hypothetical protein compare
BPHYT_RS30890 -1.6 -1.1 hypothetical protein compare
BPHYT_RS30810 -1.6 -1.2 transcriptional regulator compare
BPHYT_RS27495 -1.6 -0.9 hypothetical protein compare
BPHYT_RS28945 -1.6 -2.2 endo-1,4-D-glucanase compare
BPHYT_RS35735 -1.6 -0.9 nitroreductase compare
BPHYT_RS27720 -1.6 -0.7 hypothetical protein compare
BPHYT_RS29620 -1.6 -0.7 hypothetical protein compare
BPHYT_RS01425 -1.6 -3.0 3-phosphoglycerate dehydrogenase compare
BPHYT_RS17490 -1.5 -1.3 haloacid dehalogenase compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Lysine in Burkholderia phytofirmans PsJN

For nitrogen source L-Lysine across organisms