Experiment set3IT056 for Burkholderia phytofirmans PsJN

Compare to:

L-Lysine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS10285 +3.0 7.6 hypothetical protein compare
BPHYT_RS33515 +2.1 7.9 porin compare
BPHYT_RS16880 +1.8 3.3 malic enzyme compare
BPHYT_RS36220 +1.8 1.4 hypothetical protein compare
BPHYT_RS31050 +1.7 1.5 epimerase compare
BPHYT_RS02570 +1.7 5.4 phosphocarrier protein HPr compare
BPHYT_RS27370 +1.7 2.4 CoA transferase compare
BPHYT_RS07255 +1.7 2.7 4-oxalocrotonate decarboxylase compare
BPHYT_RS17095 +1.7 3.0 proline--tRNA ligase compare
BPHYT_RS31125 +1.7 2.4 hypothetical protein compare
BPHYT_RS14670 +1.7 1.6 hypothetical protein compare
BPHYT_RS11040 +1.7 1.6 GntR family transcriptional regulator compare
BPHYT_RS33030 +1.6 1.0 hypothetical protein compare
BPHYT_RS25870 +1.6 1.3 type III secretion system ATPase compare
BPHYT_RS04370 +1.6 2.0 glycosyl transferase compare
BPHYT_RS01435 +1.6 13.0 LysR family transcriptional regulator compare
BPHYT_RS30795 +1.6 1.3 short-chain dehydrogenase compare
BPHYT_RS25970 +1.5 1.2 urea amidolyase compare
BPHYT_RS11960 +1.5 1.3 MarR family transcriptional regulator compare
BPHYT_RS06195 +1.5 2.9 membrane protein compare
BPHYT_RS19985 +1.5 1.6 CoA-transferase compare
BPHYT_RS05905 +1.5 1.7 hypothetical protein compare
BPHYT_RS29320 +1.4 2.4 histidine kinase compare
BPHYT_RS15320 +1.4 1.5 hypothetical protein compare
BPHYT_RS29875 +1.4 2.1 betaine-aldehyde dehydrogenase compare
BPHYT_RS02725 +1.4 3.7 GntR family transcriptional regulator compare
BPHYT_RS13285 +1.4 3.6 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS12160 +1.4 3.0 peptide deformylase compare
BPHYT_RS13080 +1.3 1.1 hypothetical protein compare
BPHYT_RS24690 +1.3 5.2 ionic transporter y4hA compare
BPHYT_RS04290 +1.3 1.6 glycosyl transferase family 2 compare
BPHYT_RS08905 +1.3 2.5 peroxiredoxin compare
BPHYT_RS30085 +1.3 1.8 hypothetical protein compare
BPHYT_RS31630 +1.3 2.4 hypothetical protein compare
BPHYT_RS36460 +1.2 2.0 hypothetical protein compare
BPHYT_RS27570 +1.2 1.8 universal stress protein UspA compare
BPHYT_RS06985 +1.2 7.1 fumarate hydratase compare
BPHYT_RS15890 +1.2 1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS26975 +1.2 1.6 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS16180 +1.2 0.8 TetR family transcriptional regulator compare
BPHYT_RS30120 +1.2 2.5 heavy metal transporter compare
BPHYT_RS12535 +1.2 1.0 membrane protein compare
BPHYT_RS23030 +1.2 1.2 gluconate 2-dehydrogenase compare
BPHYT_RS30365 +1.2 0.9 beta-lactamase compare
BPHYT_RS22060 +1.2 8.3 amino acid transporter compare
BPHYT_RS25075 +1.1 1.3 AraC family transcriptional regulator compare
BPHYT_RS22765 +1.1 1.9 beta-galactosidase compare
BPHYT_RS01115 +1.1 2.3 hypothetical protein compare
BPHYT_RS08405 +1.1 1.1 hypothetical protein compare
BPHYT_RS05730 +1.1 2.4 hypothetical protein compare
BPHYT_RS01825 +1.1 2.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS29540 +1.1 1.2 aldolase compare
BPHYT_RS35400 +1.1 3.4 ABC transporter compare
BPHYT_RS14485 +1.1 3.1 ribonuclease E compare
BPHYT_RS12635 +1.1 2.2 translation factor Sua5 compare
BPHYT_RS23525 +1.1 1.0 hypothetical protein compare
BPHYT_RS20845 +1.1 0.8 peroxidase compare
BPHYT_RS29110 +1.1 1.4 DNA-directed DNA polymerase compare
BPHYT_RS20695 +1.1 1.6 ribokinase compare
BPHYT_RS26115 +1.1 2.0 polysaccharide deacetylase compare
BPHYT_RS26550 +1.1 0.8 Fis family transcriptional regulator compare
BPHYT_RS09895 +1.0 1.0 LysR family transcriptional regulator compare
BPHYT_RS08335 +1.0 1.2 hypothetical protein compare
BPHYT_RS28630 +1.0 2.1 IclR family transcriptional regulator compare
BPHYT_RS22525 +1.0 2.4 dioxygenase compare
BPHYT_RS15305 +1.0 4.2 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS33735 +1.0 4.3 hypothetical protein compare
BPHYT_RS28350 +1.0 1.5 fatty acid desaturase compare
BPHYT_RS26105 +1.0 2.2 hypothetical protein compare
BPHYT_RS30235 +1.0 1.5 tartrate dehydrogenase compare
BPHYT_RS05610 +1.0 5.2 DNA-cytosine methyltransferase compare
BPHYT_RS35105 +1.0 1.7 succinylglutamate desuccinylase/aspartoacylase compare
BPHYT_RS23445 +1.0 0.9 hexuronate transporter compare
BPHYT_RS21685 +1.0 1.4 cobalamin biosynthesis protein CobS compare
BPHYT_RS26300 +1.0 1.0 ATP-dependent DNA ligase compare
BPHYT_RS08510 +1.0 2.8 acyl-CoA dehydrogenase compare
BPHYT_RS31430 +1.0 2.5 FAD-dependent oxidoreductase compare
BPHYT_RS18820 +1.0 1.8 flagellar biosynthesis protein FliO compare
BPHYT_RS05155 +1.0 2.8 acetyltransferase GCN5 compare
BPHYT_RS09525 +1.0 1.7 toxin HipA compare
BPHYT_RS09440 +1.0 1.6 glycerate kinase compare
BPHYT_RS10315 +1.0 2.4 MFS transporter compare
BPHYT_RS22265 +1.0 0.7 hypothetical protein compare
BPHYT_RS23520 +1.0 1.3 peroxidase compare
BPHYT_RS08385 +1.0 1.0 secretion protein compare
BPHYT_RS32830 +1.0 1.8 AraC family transcriptional regulator compare
BPHYT_RS31905 +1.0 1.5 hypothetical protein compare
BPHYT_RS15360 +1.0 1.8 hypothetical protein compare
BPHYT_RS11125 +1.0 0.9 alkylhydroperoxidase compare
BPHYT_RS03100 +1.0 2.0 peptidase compare
BPHYT_RS33045 +1.0 1.1 response regulator receiver protein compare
BPHYT_RS16710 +1.0 1.1 LysR family transcriptional regulator compare
BPHYT_RS30800 +1.0 1.4 MFS transporter compare
BPHYT_RS29745 +1.0 1.5 phosphonopyruvate decarboxylase compare
BPHYT_RS14855 +1.0 1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS29485 +1.0 1.2 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS26560 +0.9 0.9 murein hydrolase transporter LrgA compare
BPHYT_RS27155 +0.9 1.1 peroxiredoxin compare
BPHYT_RS31225 +0.9 3.4 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS29165 +0.9 1.5 hypothetical protein compare
BPHYT_RS16485 +0.9 3.9 hypothetical protein compare
BPHYT_RS25780 +0.9 1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS15955 +0.9 2.2 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS08395 +0.9 1.7 DSBA oxidoreductase compare
BPHYT_RS06320 +0.9 1.9 chemotaxis protein CheY compare
BPHYT_RS22400 +0.9 0.9 hypothetical protein compare
BPHYT_RS35955 +0.9 0.9 hypothetical protein compare
BPHYT_RS27940 +0.9 2.5 FAD-binding protein compare
BPHYT_RS18640 +0.9 3.1 membrane protein compare
BPHYT_RS15285 +0.9 2.4 transcription elongation factor GreB compare
BPHYT_RS36590 +0.9 1.7 hypothetical protein compare
BPHYT_RS05235 +0.9 0.9 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS33130 +0.9 1.6 transcriptional regulator compare
BPHYT_RS25575 +0.9 0.8 alpha/beta hydrolase compare
BPHYT_RS28515 +0.9 3.3 mannonate dehydratase compare
BPHYT_RS34850 +0.9 1.5 acylphosphatase compare
BPHYT_RS32395 +0.9 0.8 hypothetical protein compare
BPHYT_RS11750 +0.9 0.8 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS23990 +0.9 1.1 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS22260 +0.9 1.4 hypothetical protein compare
BPHYT_RS16335 +0.9 0.5 membrane protein compare
BPHYT_RS27850 +0.9 1.2 hemerythrin compare
BPHYT_RS23705 +0.9 3.8 hypothetical protein compare
BPHYT_RS08125 +0.9 4.5 ATPase compare
BPHYT_RS27735 +0.9 2.7 nitroreductase compare
BPHYT_RS12825 +0.9 1.6 phasin family protein compare
BPHYT_RS02660 +0.9 0.9 membrane protein compare
BPHYT_RS18625 +0.9 2.8 allophanate hydrolase compare
BPHYT_RS07090 +0.9 1.4 hypothetical protein compare
BPHYT_RS26955 +0.9 0.8 succinylglutamate desuccinylase compare
BPHYT_RS28605 +0.9 1.5 NADPH-dependent FMN reductase compare
BPHYT_RS35635 +0.9 2.0 nucleoside 2-deoxyribosyltransferase compare
BPHYT_RS10395 +0.9 1.1 sulfonate ABC transporter compare
BPHYT_RS29645 +0.9 2.0 hypothetical protein compare
BPHYT_RS32870 +0.9 1.8 hypothetical protein compare
BPHYT_RS02880 +0.9 1.1 ATP-dependent protease compare
BPHYT_RS36035 +0.8 1.0 hypothetical protein compare
BPHYT_RS30415 +0.8 1.3 AraC family transcriptional regulator compare
BPHYT_RS31805 +0.8 2.2 beta-lactamase compare
BPHYT_RS08135 +0.8 0.9 hypothetical protein compare
BPHYT_RS34500 +0.8 1.8 hypothetical protein compare
BPHYT_RS29610 +0.8 1.7 cupin compare
BPHYT_RS23395 +0.8 0.6 glycosyl transferase compare
BPHYT_RS28170 +0.8 1.6 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS05570 +0.8 1.3 hypothetical protein compare
BPHYT_RS28635 +0.8 1.2 hypothetical protein compare
BPHYT_RS24270 +0.8 1.6 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS17725 +0.8 4.2 BolA family transcriptional regulator compare
BPHYT_RS03090 +0.8 0.7 hypothetical protein compare
BPHYT_RS34150 +0.8 1.8 Asp/Glu/hydantoin racemase compare
BPHYT_RS34910 +0.8 1.9 acid phosphatase compare
BPHYT_RS33535 +0.8 6.2 RNA polymerase sigma factor RpoD compare
BPHYT_RS00530 +0.8 2.3 hypothetical protein compare
BPHYT_RS31305 +0.8 1.3 alcohol dehydrogenase compare
BPHYT_RS20715 +0.8 0.9 peptidase compare
BPHYT_RS25820 +0.8 1.8 sugar ABC transporter compare
BPHYT_RS27715 +0.8 1.5 UspA domain-containing protein compare
BPHYT_RS28720 +0.8 1.5 shikimate dehydrogenase compare
BPHYT_RS07815 +0.8 1.1 phosphonate transporter compare
BPHYT_RS24775 +0.8 3.2 helicase compare
BPHYT_RS34745 +0.8 0.7 hypothetical protein compare
BPHYT_RS25135 +0.8 1.3 hypothetical protein compare
BPHYT_RS03185 +0.8 2.6 thiopurine S-methyltransferase compare
BPHYT_RS36360 +0.8 1.6 hypothetical protein compare
BPHYT_RS21770 +0.8 1.1 aldehyde dehydrogenase compare
BPHYT_RS00145 +0.8 1.0 hypothetical protein compare
BPHYT_RS28025 +0.8 1.2 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS33690 +0.8 0.5 molybdate ABC transporter permease compare
BPHYT_RS28245 +0.8 1.0 MFS transporter compare
BPHYT_RS10270 +0.8 1.7 D-amino acid dehydrogenase compare
BPHYT_RS28365 +0.8 1.0 Germin subfamily 1 member 15 compare
BPHYT_RS33175 +0.8 1.3 hypothetical protein compare
BPHYT_RS13935 +0.8 1.0 mannosyltransferase compare
BPHYT_RS06080 +0.8 1.5 endonuclease IV compare
BPHYT_RS25590 +0.8 1.0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS36470 +0.8 1.0 hypothetical protein compare
BPHYT_RS10035 +0.8 2.4 DSBA oxidoreductase compare
BPHYT_RS36495 +0.8 1.2 peptidase compare
BPHYT_RS21485 +0.8 0.8 hypothetical protein compare
BPHYT_RS26375 +0.8 1.8 ATPase AAA compare
BPHYT_RS05435 +0.8 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS35315 +0.8 1.5 threonyl-tRNA synthetase compare
BPHYT_RS23060 +0.8 2.3 3-isopropylmalate dehydratase large subunit compare
BPHYT_RS24505 +0.8 2.0 glyoxalase compare
BPHYT_RS10895 +0.8 2.2 transcriptional regulator compare
BPHYT_RS10205 +0.8 2.9 D-lactate dehydrogenase compare
BPHYT_RS27090 +0.8 1.6 aldo/keto reductase compare
BPHYT_RS14275 +0.8 1.3 hypothetical protein compare
BPHYT_RS28305 +0.8 0.9 protein tyrosine phosphatase compare
BPHYT_RS11915 +0.8 1.2 hypothetical protein compare
BPHYT_RS24000 +0.8 2.8 L-histidine ABC transporter, substrate-binding component (from data) compare
BPHYT_RS26765 +0.8 3.0 LuxR family transcriptional regulator compare
BPHYT_RS21855 +0.8 2.6 hypothetical protein compare
BPHYT_RS24335 +0.8 2.4 toxin HipA compare
BPHYT_RS04655 +0.8 2.7 hypothetical protein compare
BPHYT_RS29155 +0.8 2.5 hypothetical protein compare
BPHYT_RS22780 +0.8 1.4 sugar ABC transporter permease compare
BPHYT_RS33055 +0.8 2.4 hypothetical protein compare
BPHYT_RS23685 +0.8 1.9 membrane protein compare
BPHYT_RS35030 +0.7 2.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Lysine in Burkholderia phytofirmans PsJN

For nitrogen source L-Lysine across organisms